RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 NUDT18Q6ZVK8 323 aa7.73□□□□□ -1.17
VPS35P1-201ENST00000563400 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.73□□□□□ -1.17
VPS35P1-201ENST00000563400 SOWAHBA6NEL2 793 aa7.73□□□□□ -1.17
VPS35P1-201ENST00000563400 SND1Q7KZF4 910 aaKnown RBP eCLIP7.73□□□□□ -1.17
VPS35P1-201ENST00000563400 TTC13Q8NBP0 860 aa7.73□□□□□ -1.17
VPS35P1-201ENST00000563400 SNRKQ9NRH2 765 aa7.73□□□□□ -1.17
VPS35P1-201ENST00000563400 BICRAQ9NZM4 1560 aa7.72□□□□□ -1.17
VPS35P1-201ENST00000563400 NYAP1Q6ZVC0 841 aa7.72□□□□□ -1.17
VPS35P1-201ENST00000563400 RBM46Q8TBY0 533 aaKnown RBP7.72□□□□□ -1.17
VPS35P1-201ENST00000563400 CALR3Q96L12 384 aaKnown RBP7.72□□□□□ -1.17
VPS35P1-201ENST00000563400 SMAPO00193 183 aa7.71□□□□□ -1.18
VPS35P1-201ENST00000563400 CWC22Q9HCG8 908 aaKnown RBP7.71□□□□□ -1.18
VPS35P1-201ENST00000563400 FAM198AQ9UFP1 575 aa7.71□□□□□ -1.18
VPS35P1-201ENST00000563400 SPDYE5A6NIY4 337 aa7.7□□□□□ -1.18
VPS35P1-201ENST00000563400 ATP1B4Q9UN42 357 aaPredicted RBP7.7□□□□□ -1.18
VPS35P1-201ENST00000563400 GNPATO15228 680 aa7.69□□□□□ -1.18
VPS35P1-201ENST00000563400 BCAMP50895 628 aa7.69□□□□□ -1.18
VPS35P1-201ENST00000563400 SKIV2LQ15477 1246 aaKnown RBP7.69□□□□□ -1.18
VPS35P1-201ENST00000563400 TSR3Q9UJK0 312 aaKnown RBP7.69□□□□□ -1.18
VPS35P1-201ENST00000563400 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.68□□□□□ -1.18
VPS35P1-201ENST00000563400 POM121CA8CG34 1229 aa7.68□□□□□ -1.18
VPS35P1-201ENST00000563400 OATP04181 439 aa7.68□□□□□ -1.18
VPS35P1-201ENST00000563400 PPP4CP60510 307 aa7.68□□□□□ -1.18
VPS35P1-201ENST00000563400 KIAA1522Q9P206 1035 aaPredicted RBP7.68□□□□□ -1.18
VPS35P1-201ENST00000563400 SAMD7Q7Z3H4 446 aa7.68□□□□□ -1.18
VPS35P1-201ENST00000563400 GLMNQ92990 594 aa7.68□□□□□ -1.18
VPS35P1-201ENST00000563400 BAZ1AQ9NRL2 1556 aaPredicted RBP7.67□□□□□ -1.18
VPS35P1-201ENST00000563400 RBM47A0AV96 593 aaKnown RBP7.67□□□□□ -1.18
VPS35P1-201ENST00000563400 SMARCA5O60264 1052 aaPredicted RBP7.67□□□□□ -1.18
VPS35P1-201ENST00000563400 RNF40O75150 1001 aa7.67□□□□□ -1.18
VPS35P1-201ENST00000563400 RFX1P22670 979 aa7.67□□□□□ -1.18
VPS35P1-201ENST00000563400 DNAJB2P25686 324 aa7.67□□□□□ -1.18
VPS35P1-201ENST00000563400 SLF2Q8IX21 1173 aa7.67□□□□□ -1.18
VPS35P1-201ENST00000563400 FAM9AQ8IZU1 332 aaPredicted RBP7.67□□□□□ -1.18
VPS35P1-201ENST00000563400 PBXIP1Q96AQ6 731 aa7.67□□□□□ -1.18
VPS35P1-201ENST00000563400 GDPD2Q9HCC8 539 aa7.67□□□□□ -1.18
VPS35P1-201ENST00000563400 POLR3EQ9NVU0 708 aa7.67□□□□□ -1.18
VPS35P1-201ENST00000563400 HPS5Q9UPZ3 1129 aa7.67□□□□□ -1.18
VPS35P1-201ENST00000563400 USTQ9Y2C2 406 aa7.67□□□□□ -1.18
VPS35P1-201ENST00000563400 CSB-PGBD3P0DP91 1061 aa7.66□□□□□ -1.18
VPS35P1-201ENST00000563400 EYA1Q99502 592 aa7.66□□□□□ -1.18
VPS35P1-201ENST00000563400 PLA2G2EQ9NZK7 142 aa7.66□□□□□ -1.18
VPS35P1-201ENST00000563400 ADGRG1Q9Y653 693 aa7.66□□□□□ -1.18
VPS35P1-201ENST00000563400 MRRFQ96E11 262 aaKnown RBP7.64□□□□□ -1.19
VPS35P1-201ENST00000563400 WBP1LQ9NX94 342 aa7.64□□□□□ -1.19
VPS35P1-201ENST00000563400 EIF4G1Q04637 1599 aaKnown RBP7.63□□□□□ -1.19
VPS35P1-201ENST00000563400 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.63□□□□□ -1.19
VPS35P1-201ENST00000563400 C3orf80F5H4A9 247 aa7.63□□□□□ -1.19
VPS35P1-201ENST00000563400 FBXO31Q5XUX0 539 aaPredicted RBP7.63□□□□□ -1.19
VPS35P1-201ENST00000563400 SMARCA2P51531 1590 aa7.63□□□□□ -1.19
VPS35P1-201ENST00000563400 SWT1Q5T5J6 900 aaKnown RBP7.62□□□□□ -1.19
VPS35P1-201ENST00000563400 PRR14Q9BWN1 585 aa7.62□□□□□ -1.19
VPS35P1-201ENST00000563400 RCCD1A6NED2 376 aa7.62□□□□□ -1.19
VPS35P1-201ENST00000563400 SRPK2P78362 688 aaKnown RBP7.62□□□□□ -1.19
VPS35P1-201ENST00000563400 TXNDC2Q86VQ3 553 aa7.62□□□□□ -1.19
VPS35P1-201ENST00000563400 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.62□□□□□ -1.19
VPS35P1-201ENST00000563400 ABL2P42684 1182 aa7.61□□□□□ -1.19
VPS35P1-201ENST00000563400 PXYLP1Q8TE99 480 aa7.61□□□□□ -1.19
VPS35P1-201ENST00000563400 TMEM134Q9H6X4 195 aa7.61□□□□□ -1.19
VPS35P1-201ENST00000563400 FAM161AQ3B820 660 aa7.6□□□□□ -1.19
VPS35P1-201ENST00000563400 METTL3Q86U44 580 aaKnown RBP7.6□□□□□ -1.19
VPS35P1-201ENST00000563400 UBE2Q2Q8WVN8 375 aa7.6□□□□□ -1.19
VPS35P1-201ENST00000563400 SPATA32Q96LK8 384 aa7.6□□□□□ -1.19
VPS35P1-201ENST00000563400 RFC5P40937 340 aa7.59□□□□□ -1.19
VPS35P1-201ENST00000563400 CFAP70Q5T0N1 1121 aa7.59□□□□□ -1.19
VPS35P1-201ENST00000563400 MTMR14Q8NCE2 650 aa7.59□□□□□ -1.19
VPS35P1-201ENST00000563400 BANK1Q8NDB2 785 aa7.59□□□□□ -1.19
VPS35P1-201ENST00000563400 TMUB1Q9BVT8 246 aa7.59□□□□□ -1.19
VPS35P1-201ENST00000563400 VRTNQ9H8Y1 702 aa7.59□□□□□ -1.19
VPS35P1-201ENST00000563400 CECR2Q9BXF3 1484 aa7.59□□□□□ -1.19
VPS35P1-201ENST00000563400 DRC1Q96MC2 740 aa7.58□□□□□ -1.2
VPS35P1-201ENST00000563400 NCAPD3P42695 1498 aa7.58□□□□□ -1.2
VPS35P1-201ENST00000563400 IFFO2Q5TF58 517 aa7.57□□□□□ -1.2
VPS35P1-201ENST00000563400 CERS3Q8IU89 383 aa7.57□□□□□ -1.2
VPS35P1-201ENST00000563400 BEGAINQ9BUH8 593 aa7.57□□□□□ -1.2
VPS35P1-201ENST00000563400 CADPSQ9ULU8 1353 aa7.57□□□□□ -1.2
VPS35P1-201ENST00000563400 CANXP27824 592 aaKnown RBP7.57□□□□□ -1.2
VPS35P1-201ENST00000563400 SSTR3P32745 418 aaPredicted RBP7.57□□□□□ -1.2
VPS35P1-201ENST00000563400 KCNC4Q03721 635 aa7.57□□□□□ -1.2
VPS35P1-201ENST00000563400 KMT5BQ4FZB7 885 aa7.57□□□□□ -1.2
VPS35P1-201ENST00000563400 ADAMTS19Q8TE59 1207 aa7.57□□□□□ -1.2
VPS35P1-201ENST00000563400 CC2D2AQ9P2K1 1620 aa7.56□□□□□ -1.2
VPS35P1-201ENST00000563400 TMEM88BA6NKF7 163 aa7.56□□□□□ -1.2
VPS35P1-201ENST00000563400 HDGFL1Q5TGJ6 251 aa7.56□□□□□ -1.2
VPS35P1-201ENST00000563400 ARID4BQ4LE39 1312 aaPredicted RBP7.55□□□□□ -1.2
VPS35P1-201ENST00000563400 ITGBL1O95965 494 aaPredicted RBP7.55□□□□□ -1.2
VPS35P1-201ENST00000563400 MDM2Q00987 491 aaPredicted RBP7.55□□□□□ -1.2
VPS35P1-201ENST00000563400 MYSM1Q5VVJ2 828 aa7.55□□□□□ -1.2
VPS35P1-201ENST00000563400 SULF1Q8IWU6 871 aa7.55□□□□□ -1.2
VPS35P1-201ENST00000563400 BAZ1BQ9UIG0 1483 aaKnown RBP7.55□□□□□ -1.2
VPS35P1-201ENST00000563400 SMARCA4P51532 1647 aa7.54□□□□□ -1.2
VPS35P1-201ENST00000563400 KDM4AO75164 1064 aa7.54□□□□□ -1.2
VPS35P1-201ENST00000563400 TCF3P15923 654 aa7.54□□□□□ -1.2
VPS35P1-201ENST00000563400 WWC1Q8IX03 1113 aa7.54□□□□□ -1.2
VPS35P1-201ENST00000563400 TBC1D2BQ9UPU7 963 aa7.54□□□□□ -1.2
VPS35P1-201ENST00000563400 ZNF16P17020 682 aaPredicted RBP7.53□□□□□ -1.2
VPS35P1-201ENST00000563400 DNAJC14Q6Y2X3 702 aaPredicted RBP7.53□□□□□ -1.2
VPS35P1-201ENST00000563400 SREK1Q8WXA9 508 aaKnown RBP7.53□□□□□ -1.2
VPS35P1-201ENST00000563400 ATAD2BQ9ULI0 1458 aa7.53□□□□□ -1.2
VPS35P1-201ENST00000563400 CLCN1P35523 988 aa7.52□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms