RNA–Protein interactions for RNA: ENST00000563109.1

RAB40C-207, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 710 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-207ENST00000563109 CERKQ8TCT0 537 aa26.59■■□□□ 1.85
RAB40C-207ENST00000563109 CENPJQ9HC77 1338 aaPredicted RBP26.59■■□□□ 1.85
RAB40C-207ENST00000563109 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.59■■□□□ 1.85
RAB40C-207ENST00000563109 USP47Q96K76 1375 aa26.58■■□□□ 1.85
RAB40C-207ENST00000563109 SAFB2Q14151 953 aaKnown RBP eCLIP26.58■■□□□ 1.85
RAB40C-207ENST00000563109 ADGRB2O60241 1585 aa26.56■■□□□ 1.84
RAB40C-207ENST00000563109 CDC42BPGQ6DT37 1551 aa26.55■■□□□ 1.84
RAB40C-207ENST00000563109 DCCP43146 1447 aa26.55■■□□□ 1.84
RAB40C-207ENST00000563109 C19orf44Q9H6X5 657 aa26.53■■□□□ 1.84
RAB40C-207ENST00000563109 MINK1Q8N4C8 1332 aaPredicted RBP26.52■■□□□ 1.84
RAB40C-207ENST00000563109 ATF3P18847 181 aa26.5■■□□□ 1.83
RAB40C-207ENST00000563109 EIF4G2P78344 907 aaKnown RBP eCLIP26.49■■□□□ 1.831e-6■■■■□ 25.9
RAB40C-207ENST00000563109 CADPS2Q86UW7 1296 aa26.48■■□□□ 1.83
RAB40C-207ENST00000563109 FMN2Q9NZ56 1722 aa26.48■■□□□ 1.83
RAB40C-207ENST00000563109 SBNO2Q9Y2G9 1366 aa26.47■■□□□ 1.83
RAB40C-207ENST00000563109 HIRIP3Q9BW71 556 aaPredicted RBP26.47■■□□□ 1.83
RAB40C-207ENST00000563109 ST20-MTHFSA0A0A6YYL1 179 aa26.46■■□□□ 1.83
RAB40C-207ENST00000563109 SLC24A1O60721 1099 aa26.43■■□□□ 1.82
RAB40C-207ENST00000563109 TOM1O60784 492 aa26.42■■□□□ 1.82
RAB40C-207ENST00000563109 TULP4Q9NRJ4 1543 aa26.42■■□□□ 1.82
RAB40C-207ENST00000563109 HSPA5P11021 654 aaKnown RBP26.41■■□□□ 1.82
RAB40C-207ENST00000563109 EVC2Q86UK5 1308 aa26.4■■□□□ 1.82
RAB40C-207ENST00000563109 UBAP1LF5GYI3 381 aa26.4■■□□□ 1.82
RAB40C-207ENST00000563109 WASLO00401 505 aaPredicted RBP26.4■■□□□ 1.82
RAB40C-207ENST00000563109 MST1RQ04912 1400 aa26.39■■□□□ 1.82
RAB40C-207ENST00000563109 ITSN1Q15811 1721 aa26.38■■□□□ 1.81
RAB40C-207ENST00000563109 ANKARQ7Z5J8 1434 aa26.37■■□□□ 1.81
RAB40C-207ENST00000563109 SRPK2P78362 688 aaKnown RBP26.36■■□□□ 1.81
RAB40C-207ENST00000563109 TESK2Q96S53 571 aa26.36■■□□□ 1.81
RAB40C-207ENST00000563109 CDK19Q9BWU1 502 aa26.36■■□□□ 1.81
RAB40C-207ENST00000563109 C1orf167Q5SNV9 1468 aa26.36■■□□□ 1.81
RAB40C-207ENST00000563109 USP32Q8NFA0 1604 aa26.35■■□□□ 1.81
RAB40C-207ENST00000563109 RGPD8O14715 1765 aaPredicted RBP26.34■■□□□ 1.81
RAB40C-207ENST00000563109 TMF1P82094 1093 aa26.34■■□□□ 1.81
RAB40C-207ENST00000563109 SLAIN2Q9P270 581 aa26.34■■□□□ 1.81
RAB40C-207ENST00000563109 NUTM2FA1L443 756 aa26.33■■□□□ 1.81
RAB40C-207ENST00000563109 ATP7BP35670 1465 aa26.32■■□□□ 1.8
RAB40C-207ENST00000563109 KIF1AQ12756 1690 aa26.31■■□□□ 1.8
RAB40C-207ENST00000563109 TOPAZ1Q8N9V7 1692 aa26.31■■□□□ 1.8
RAB40C-207ENST00000563109 ROBO1Q9Y6N7 1651 aa26.31■■□□□ 1.8
RAB40C-207ENST00000563109 SCAF1Q9H7N4 1312 aaKnown RBP26.31■■□□□ 1.8
RAB40C-207ENST00000563109 PIP4K2BP78356 416 aa26.3■■□□□ 1.8
RAB40C-207ENST00000563109 CDCA8Q53HL2 280 aa26.29■■□□□ 1.8
RAB40C-207ENST00000563109 CABP2Q9NPB3 220 aa26.29■■□□□ 1.8
RAB40C-207ENST00000563109 ATAD2Q6PL18 1390 aa26.29■■□□□ 1.8
RAB40C-207ENST00000563109 DISP3Q9P2K9 1392 aa26.29■■□□□ 1.8
RAB40C-207ENST00000563109 NUDT16Q96DE0 195 aaKnown RBP26.27■■□□□ 1.8
RAB40C-207ENST00000563109 PRR36Q9H6K5 1346 aa26.26■■□□□ 1.79
RAB40C-207ENST00000563109 ESCO1Q5FWF5 840 aa26.26■■□□□ 1.79
RAB40C-207ENST00000563109 PUS7Q96PZ0 661 aaKnown RBP26.24■■□□□ 1.79
RAB40C-207ENST00000563109 BRINP3Q76B58 766 aa26.23■■□□□ 1.79
RAB40C-207ENST00000563109 CCDC61Q9Y6R9 512 aa26.23■■□□□ 1.79
RAB40C-207ENST00000563109 PPIP5K1Q6PFW1 1433 aa26.22■■□□□ 1.79
RAB40C-207ENST00000563109 ORAI2Q96SN7 254 aa26.22■■□□□ 1.79
RAB40C-207ENST00000563109 NHSL1Q5SYE7 1610 aa26.21■■□□□ 1.79
RAB40C-207ENST00000563109 PHF8Q9UPP1 1060 aa26.21■■□□□ 1.79
RAB40C-207ENST00000563109 FBXO41Q8TF61 875 aa26.19■■□□□ 1.78
RAB40C-207ENST00000563109 NINLQ9Y2I6 1382 aa26.19■■□□□ 1.78
RAB40C-207ENST00000563109 AHDC1Q5TGY3 1603 aaPredicted RBP26.18■■□□□ 1.78
RAB40C-207ENST00000563109 PHLPP1O60346 1717 aa26.17■■□□□ 1.78
RAB40C-207ENST00000563109 POLR3GLQ9BT43 218 aa26.17■■□□□ 1.78
RAB40C-207ENST00000563109 PMFBP1Q8TBY8 1022 aa26.16■■□□□ 1.78
RAB40C-207ENST00000563109 MYOM1P52179 1685 aa26.15■■□□□ 1.78
RAB40C-207ENST00000563109 NGDNQ8NEJ9 315 aaKnown RBP26.15■■□□□ 1.78
RAB40C-207ENST00000563109 TMC1Q8TDI8 760 aa26.15■■□□□ 1.78
RAB40C-207ENST00000563109 NPHP3Q7Z494 1330 aa26.14■■□□□ 1.78
RAB40C-207ENST00000563109 AKAP12Q02952 1782 aa26.13■■□□□ 1.77
RAB40C-207ENST00000563109 PLEKHG3A1L390 1219 aa26.13■■□□□ 1.77
RAB40C-207ENST00000563109 CABP1Q9NZU7 370 aa26.13■■□□□ 1.77
RAB40C-207ENST00000563109 POLR3AO14802 1390 aaPredicted RBP26.11■■□□□ 1.77
RAB40C-207ENST00000563109 FOXO3O43524 673 aa26.11■■□□□ 1.77
RAB40C-207ENST00000563109 KIF7Q2M1P5 1343 aa26.11■■□□□ 1.77
RAB40C-207ENST00000563109 C11orf95C9JLR9 678 aaPredicted RBP26.1■■□□□ 1.77
RAB40C-207ENST00000563109 ACEP12821 1306 aa26.1■■□□□ 1.77
RAB40C-207ENST00000563109 PSME1Q06323 249 aa26.09■■□□□ 1.77
RAB40C-207ENST00000563109 CCDC7Q96M83 1385 aa26.08■■□□□ 1.77
RAB40C-207ENST00000563109 MON2Q7Z3U7 1717 aa26.08■■□□□ 1.77
RAB40C-207ENST00000563109 COL16A1Q07092 1604 aaPredicted RBP26.08■■□□□ 1.77
RAB40C-207ENST00000563109 PXDNQ92626 1479 aa26.08■■□□□ 1.77
RAB40C-207ENST00000563109 HDGFL2Q7Z4V5 671 aaPredicted RBP26.07■■□□□ 1.76
RAB40C-207ENST00000563109 DDX17Q92841 729 aaKnown RBP26.07■■□□□ 1.76
RAB40C-207ENST00000563109 SLC12A5Q9H2X9 1139 aa26.07■■□□□ 1.76
RAB40C-207ENST00000563109 TERF2IPQ9NYB0 399 aa26.07■■□□□ 1.76
RAB40C-207ENST00000563109 TRPM3Q9HCF6 1732 aaPredicted RBP26.05■■□□□ 1.76
RAB40C-207ENST00000563109 XPCQ01831 940 aaPredicted RBP26.04■■□□□ 1.76
RAB40C-207ENST00000563109 KRT28Q7Z3Y7 464 aa26.04■■□□□ 1.76
RAB40C-207ENST00000563109 ZNF692Q9BU19 519 aaPredicted RBP26.04■■□□□ 1.76
RAB40C-207ENST00000563109 WASHC2AQ641Q2 1341 aa26.04■■□□□ 1.76
RAB40C-207ENST00000563109 ANKRD36BQ8N2N9 1353 aa26.04■■□□□ 1.76
RAB40C-207ENST00000563109 USP6P35125 1406 aa26.04■■□□□ 1.76
RAB40C-207ENST00000563109 CPSF1Q10570 1443 aaKnown RBP26.04■■□□□ 1.76
RAB40C-207ENST00000563109 CD163L1Q9NR16 1453 aa26.04■■□□□ 1.76
RAB40C-207ENST00000563109 SOS2Q07890 1332 aaPredicted RBP26.03■■□□□ 1.76
RAB40C-207ENST00000563109 A0A1W2PP64 1363 aa26.03■■□□□ 1.76
RAB40C-207ENST00000563109 KTN1Q86UP2 1357 aaKnown RBP26.03■■□□□ 1.76
RAB40C-207ENST00000563109 NRKQ7Z2Y5 1582 aa26.03■■□□□ 1.76
RAB40C-207ENST00000563109 BRD4O60885 1362 aaPredicted RBP26.02■■□□□ 1.76
RAB40C-207ENST00000563109 SBNO1A3KN83 1393 aa26.01■■□□□ 1.75
RAB40C-207ENST00000563109 HSPA1LP34931 641 aa26.01■■□□□ 1.75
RAB40C-207ENST00000563109 TNS3Q68CZ2 1445 aa25.99■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms