RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 PANK3Q9H999 370 aa14.12□□□□□ -0.15
USP3-219ENST00000561326 TMC1Q8TDI8 760 aa14.1□□□□□ -0.15
USP3-219ENST00000561326 CDK19Q9BWU1 502 aa14.1□□□□□ -0.15
USP3-219ENST00000561326 PTPRUQ92729 1446 aa14.09□□□□□ -0.15
USP3-219ENST00000561326 KNSTRNQ9Y448 316 aa14.09□□□□□ -0.15
USP3-219ENST00000561326 ATAD2Q6PL18 1390 aa14.09□□□□□ -0.15
USP3-219ENST00000561326 NINLQ9Y2I6 1382 aa14.09□□□□□ -0.15
USP3-219ENST00000561326 XRN1Q8IZH2 1706 aaKnown RBP14.08□□□□□ -0.16
USP3-219ENST00000561326 CCER2I3L3R5 266 aa14.08□□□□□ -0.16
USP3-219ENST00000561326 WASLO00401 505 aaPredicted RBP14.08□□□□□ -0.16
USP3-219ENST00000561326 CABP2Q9NPB3 220 aa14.08□□□□□ -0.16
USP3-219ENST00000561326 TULP4Q9NRJ4 1543 aa14.08□□□□□ -0.16
USP3-219ENST00000561326 ROBO2Q9HCK4 1378 aa14.08□□□□□ -0.16
USP3-219ENST00000561326 PLEKHH1Q9ULM0 1364 aa14.08□□□□□ -0.16
USP3-219ENST00000561326 MYOM1P52179 1685 aa14.07□□□□□ -0.16
USP3-219ENST00000561326 PTCH1Q13635 1447 aa14.07□□□□□ -0.16
USP3-219ENST00000561326 KCNA6P17658 529 aa14.07□□□□□ -0.16
USP3-219ENST00000561326 HSPA2P54652 639 aa14.07□□□□□ -0.16
USP3-219ENST00000561326 KTN1Q86UP2 1357 aaKnown RBP14.07□□□□□ -0.16
USP3-219ENST00000561326 PER1O15534 1290 aaPredicted RBP14.06□□□□□ -0.16
USP3-219ENST00000561326 PRKRIP1Q9H875 184 aaPredicted RBP14.06□□□□□ -0.16
USP3-219ENST00000561326 LMTK3Q96Q04 1460 aa14.06□□□□□ -0.16
USP3-219ENST00000561326 RALBP1Q15311 655 aa14.05□□□□□ -0.16
USP3-219ENST00000561326 SLC12A5Q9H2X9 1139 aa14.05□□□□□ -0.16
USP3-219ENST00000561326 TERF2IPQ9NYB0 399 aa14.05□□□□□ -0.16
USP3-219ENST00000561326 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.04□□□□□ -0.16
USP3-219ENST00000561326 DMRT2Q9Y5R5 561 aa14.03□□□□□ -0.16
USP3-219ENST00000561326 STRCQ7RTU9 1775 aa14.03□□□□□ -0.16
USP3-219ENST00000561326 ADGRB2O60241 1585 aa14.02□□□□□ -0.16
USP3-219ENST00000561326 HDGFL2Q7Z4V5 671 aaPredicted RBP14.02□□□□□ -0.17
USP3-219ENST00000561326 CCDC61Q9Y6R9 512 aa14.02□□□□□ -0.17
USP3-219ENST00000561326 NUDT16Q96DE0 195 aaKnown RBP14.01□□□□□ -0.17
USP3-219ENST00000561326 ANKRD36BQ8N2N9 1353 aa14□□□□□ -0.17
USP3-219ENST00000561326 NPC1L1Q9UHC9 1359 aa14□□□□□ -0.17
USP3-219ENST00000561326 CNGB1Q14028 1251 aaPredicted RBP14□□□□□ -0.17
USP3-219ENST00000561326 PROSER2Q86WR7 435 aaPredicted RBP14□□□□□ -0.17
USP3-219ENST00000561326 CABP1Q9NZU7 370 aa14□□□□□ -0.17
USP3-219ENST00000561326 C14orf37Q86TY3 774 aa13.99□□□□□ -0.17
USP3-219ENST00000561326 NWD1Q149M9 1564 aa13.99□□□□□ -0.17
USP3-219ENST00000561326 ITSN1Q15811 1721 aa13.98□□□□□ -0.17
USP3-219ENST00000561326 CGNL1Q0VF96 1302 aa13.98□□□□□ -0.17
USP3-219ENST00000561326 CC2D1BQ5T0F9 858 aaKnown RBP13.98□□□□□ -0.17
USP3-219ENST00000561326 ZNF692Q9BU19 519 aaPredicted RBP13.98□□□□□ -0.17
USP3-219ENST00000561326 CARD14Q9BXL6 1004 aa13.98□□□□□ -0.17
USP3-219ENST00000561326 RGPD8O14715 1765 aaPredicted RBP13.97□□□□□ -0.17
USP3-219ENST00000561326 AMER1Q5JTC6 1135 aaPredicted RBP13.97□□□□□ -0.17
USP3-219ENST00000561326 NKTRP30414 1462 aaKnown RBP13.97□□□□□ -0.17
USP3-219ENST00000561326 PPIP5K1Q6PFW1 1433 aa13.97□□□□□ -0.17
USP3-219ENST00000561326 MYBBP1AQ9BQG0 1328 aaKnown RBP13.96□□□□□ -0.17
USP3-219ENST00000561326 ATP7BP35670 1465 aa13.96□□□□□ -0.17
USP3-219ENST00000561326 PARD3Q8TEW0 1356 aa13.96□□□□□ -0.18
USP3-219ENST00000561326 USP32Q8NFA0 1604 aa13.95□□□□□ -0.18
USP3-219ENST00000561326 AEBP2Q6ZN18 517 aaPredicted RBP13.95□□□□□ -0.18
USP3-219ENST00000561326 NSD3Q9BZ95 1437 aa13.95□□□□□ -0.18
USP3-219ENST00000561326 FMN2Q9NZ56 1722 aa13.95□□□□□ -0.18
USP3-219ENST00000561326 PLEKHG3A1L390 1219 aa13.94□□□□□ -0.18
USP3-219ENST00000561326 NALCNQ8IZF0 1738 aa13.94□□□□□ -0.18
USP3-219ENST00000561326 MRS2Q9HD23 443 aa13.94□□□□□ -0.18
USP3-219ENST00000561326 NCOA3Q9Y6Q9 1424 aa13.94□□□□□ -0.18
USP3-219ENST00000561326 A0A1W2PP64 1363 aa13.94□□□□□ -0.18
USP3-219ENST00000561326 AKAP12Q02952 1782 aa13.94□□□□□ -0.18
USP3-219ENST00000561326 ANKARQ7Z5J8 1434 aa13.93□□□□□ -0.18
USP3-219ENST00000561326 ADGRL3Q9HAR2 1447 aa13.93□□□□□ -0.18
USP3-219ENST00000561326 NUTM2FA1L443 756 aa13.93□□□□□ -0.18
USP3-219ENST00000561326 NLRP13Q86W25 1043 aa13.93□□□□□ -0.18
USP3-219ENST00000561326 C19orf44Q9H6X5 657 aa13.93□□□□□ -0.18
USP3-219ENST00000561326 STRCP1A6NGW2 1772 aa13.93□□□□□ -0.18
USP3-219ENST00000561326 NSD2O96028 1365 aa13.93□□□□□ -0.18
USP3-219ENST00000561326 CDC42BPGQ6DT37 1551 aa13.92□□□□□ -0.18
USP3-219ENST00000561326 TOPAZ1Q8N9V7 1692 aa13.92□□□□□ -0.18
USP3-219ENST00000561326 MORC1Q86VD1 984 aa13.92□□□□□ -0.18
USP3-219ENST00000561326 BRD4O60885 1362 aaPredicted RBP13.92□□□□□ -0.18
USP3-219ENST00000561326 PRR36Q9H6K5 1346 aa13.91□□□□□ -0.18
USP3-219ENST00000561326 RBM33Q96EV2 1170 aaKnown RBP13.91□□□□□ -0.18
USP3-219ENST00000561326 KIF20BQ96Q89 1820 aa13.91□□□□□ -0.18
USP3-219ENST00000561326 CD163L1Q9NR16 1453 aa13.91□□□□□ -0.18
USP3-219ENST00000561326 CPSF1Q10570 1443 aaKnown RBP13.9□□□□□ -0.18
USP3-219ENST00000561326 MON2Q7Z3U7 1717 aa13.9□□□□□ -0.18
USP3-219ENST00000561326 ATF3P18847 181 aa13.9□□□□□ -0.18
USP3-219ENST00000561326 NGDNQ8NEJ9 315 aaKnown RBP13.9□□□□□ -0.18
USP3-219ENST00000561326 ANKRD26Q9UPS8 1709 aa13.9□□□□□ -0.18
USP3-219ENST00000561326 EDC4Q6P2E9 1401 aaKnown RBP13.9□□□□□ -0.19
USP3-219ENST00000561326 ACEP12821 1306 aa13.9□□□□□ -0.19
USP3-219ENST00000561326 PPP2R1AP30153 589 aa13.88□□□□□ -0.19
USP3-219ENST00000561326 YTHDC1Q96MU7 727 aaKnown RBP13.88□□□□□ -0.19
USP3-219ENST00000561326 TMEM94Q12767 1356 aa13.87□□□□□ -0.19
USP3-219ENST00000561326 FYB1O15117 783 aa13.87□□□□□ -0.19
USP3-219ENST00000561326 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.87□□□□□ -0.199e-8■■■■□ 26.3
USP3-219ENST00000561326 PMFBP1Q8TBY8 1022 aa13.87□□□□□ -0.19
USP3-219ENST00000561326 MSH6P52701 1360 aa13.86□□□□□ -0.19
USP3-219ENST00000561326 CADPS2Q86UW7 1296 aa13.86□□□□□ -0.19
USP3-219ENST00000561326 PHF8Q9UPP1 1060 aa13.86□□□□□ -0.19
USP3-219ENST00000561326 XIRP1Q702N8 1843 aaKnown RBP13.85□□□□□ -0.19
USP3-219ENST00000561326 POLR3AO14802 1390 aaPredicted RBP13.85□□□□□ -0.19
USP3-219ENST00000561326 DCCP43146 1447 aa13.85□□□□□ -0.19
USP3-219ENST00000561326 CCDC184Q52MB2 194 aa13.85□□□□□ -0.19
USP3-219ENST00000561326 ESCO1Q5FWF5 840 aa13.85□□□□□ -0.19
USP3-219ENST00000561326 FAM9BQ8IZU0 186 aa13.85□□□□□ -0.19
USP3-219ENST00000561326 GGNBP2Q9H3C7 697 aa13.85□□□□□ -0.19
USP3-219ENST00000561326 TTC21AQ8NDW8 1320 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms