RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 GRIPAP1Q4V328 841 aa10.65□□□□□ -0.7
VPS13C-210ENST00000561258 ZBTB24O43167 697 aaPredicted RBP10.64□□□□□ -0.71
VPS13C-210ENST00000561258 MAP2K5Q13163 448 aa10.64□□□□□ -0.71
VPS13C-210ENST00000561258 HLA-CQ95604 372 aa10.63□□□□□ -0.71
VPS13C-210ENST00000561258 AVPP01185 164 aa10.62□□□□□ -0.71
VPS13C-210ENST00000561258 MDM2Q00987 491 aaPredicted RBP10.62□□□□□ -0.71
VPS13C-210ENST00000561258 IRF6O14896 467 aa10.61□□□□□ -0.71
VPS13C-210ENST00000561258 KDM4AO75164 1064 aa10.61□□□□□ -0.71
VPS13C-210ENST00000561258 Q3C1V9 767 aa10.61□□□□□ -0.71
VPS13C-210ENST00000561258 CRIPAKQ8N1N5 446 aa10.61□□□□□ -0.71
VPS13C-210ENST00000561258 TTC24A2A3L6 582 aaPredicted RBP10.6□□□□□ -0.71
VPS13C-210ENST00000561258 MMP16P51512 607 aa10.6□□□□□ -0.71
VPS13C-210ENST00000561258 AXIN1O15169 862 aa10.59□□□□□ -0.71
VPS13C-210ENST00000561258 USB1Q9BQ65 265 aaKnown RBP10.59□□□□□ -0.71
VPS13C-210ENST00000561258 TRIM32Q13049 653 aa10.58□□□□□ -0.72
VPS13C-210ENST00000561258 GMPR2Q9P2T1 348 aaKnown RBP10.58□□□□□ -0.72
VPS13C-210ENST00000561258 WNT7AO00755 349 aa10.57□□□□□ -0.72
VPS13C-210ENST00000561258 DXOO77932 396 aaKnown RBP10.56□□□□□ -0.72
VPS13C-210ENST00000561258 GUCA2AQ02747 115 aa10.56□□□□□ -0.72
VPS13C-210ENST00000561258 MINK1Q8N4C8 1332 aaPredicted RBP10.56□□□□□ -0.72
VPS13C-210ENST00000561258 SMPD1P17405 629 aa10.55□□□□□ -0.72
VPS13C-210ENST00000561258 CTC1Q2NKJ3 1217 aa10.55□□□□□ -0.72
VPS13C-210ENST00000561258 CCDC24Q8N4L8 307 aa10.55□□□□□ -0.72
VPS13C-210ENST00000561258 CCDC102AQ96A19 550 aa10.55□□□□□ -0.72
VPS13C-210ENST00000561258 MRGPRX2Q96LB1 330 aa10.55□□□□□ -0.72
VPS13C-210ENST00000561258 HOXA2O43364 376 aa10.54□□□□□ -0.72
VPS13C-210ENST00000561258 SMCPP49901 116 aaPredicted RBP10.54□□□□□ -0.72
VPS13C-210ENST00000561258 TREML4Q6UXN2 200 aa10.54□□□□□ -0.72
VPS13C-210ENST00000561258 SNIP1Q8TAD8 396 aaKnown RBP10.54□□□□□ -0.72
VPS13C-210ENST00000561258 C11orf95C9JLR9 678 aaPredicted RBP10.53□□□□□ -0.72
VPS13C-210ENST00000561258 J3QL48 77 aa10.53□□□□□ -0.72
VPS13C-210ENST00000561258 TULP1O00294 542 aaPredicted RBP10.53□□□□□ -0.72
VPS13C-210ENST00000561258 USP46P62068 366 aa10.53□□□□□ -0.72
VPS13C-210ENST00000561258 LCE2AQ5TA79 106 aaPredicted RBP10.53□□□□□ -0.72
VPS13C-210ENST00000561258 SYMPKQ92797 1274 aaKnown RBP10.52□□□□□ -0.73
VPS13C-210ENST00000561258 GPCPD1Q9NPB8 672 aa10.5□□□□□ -0.73
VPS13C-210ENST00000561258 FAM217BQ9NTX9 383 aaPredicted RBP10.5□□□□□ -0.73
VPS13C-210ENST00000561258 SKOR1P84550 965 aa10.49□□□□□ -0.73
VPS13C-210ENST00000561258 RC3H1Q5TC82 1133 aaKnown RBP10.48□□□□□ -0.73
VPS13C-210ENST00000561258 CLCN1P35523 988 aa10.47□□□□□ -0.73
VPS13C-210ENST00000561258 HPS1Q92902 700 aa10.47□□□□□ -0.73
VPS13C-210ENST00000561258 JUNDP17535 347 aa10.46□□□□□ -0.73
VPS13C-210ENST00000561258 REPIN1Q9BWE0 567 aaKnown RBP10.46□□□□□ -0.73
VPS13C-210ENST00000561258 ATP13A2Q9NQ11 1180 aa10.46□□□□□ -0.73
VPS13C-210ENST00000561258 NUTM1Q86Y26 1132 aa10.45□□□□□ -0.74
VPS13C-210ENST00000561258 WFS1O76024 890 aa10.44□□□□□ -0.74
VPS13C-210ENST00000561258 SNRPBP14678 240 aaKnown RBP10.44□□□□□ -0.74
VPS13C-210ENST00000561258 KRI1Q8N9T8 703 aaKnown RBP10.44□□□□□ -0.74
VPS13C-210ENST00000561258 WNT7BP56706 349 aa10.43□□□□□ -0.74
VPS13C-210ENST00000561258 PTCRAQ6ISU1 281 aaPredicted RBP10.43□□□□□ -0.74
VPS13C-210ENST00000561258 PCDHGC3Q9UN70 934 aa10.43□□□□□ -0.74
VPS13C-210ENST00000561258 NFX1Q12986 1120 aaKnown RBP10.42□□□□□ -0.74
VPS13C-210ENST00000561258 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.42□□□□□ -0.74
VPS13C-210ENST00000561258 RETREG3Q86VR2 466 aa10.42□□□□□ -0.74
VPS13C-210ENST00000561258 NUDT12Q9BQG2 462 aa10.42□□□□□ -0.74
VPS13C-210ENST00000561258 FDX1P10109 184 aa10.41□□□□□ -0.74
VPS13C-210ENST00000561258 ALDH1A1P00352 501 aa10.4□□□□□ -0.74
VPS13C-210ENST00000561258 C6orf229H3BNL8 230 aa10.39□□□□□ -0.75
VPS13C-210ENST00000561258 SSTR3P32745 418 aaPredicted RBP10.39□□□□□ -0.75
VPS13C-210ENST00000561258 TRIM47Q96LD4 638 aa10.39□□□□□ -0.75
VPS13C-210ENST00000561258 SIAH2O43255 324 aa10.37□□□□□ -0.75
VPS13C-210ENST00000561258 NDUFV2P19404 249 aa10.37□□□□□ -0.75
VPS13C-210ENST00000561258 SPIRE2Q8WWL2 714 aa10.37□□□□□ -0.75
VPS13C-210ENST00000561258 SENP2Q9HC62 589 aa10.37□□□□□ -0.75
VPS13C-210ENST00000561258 LCE2CQ5TA81 110 aa10.36□□□□□ -0.75
VPS13C-210ENST00000561258 EHBP1Q8NDI1 1231 aa10.36□□□□□ -0.75
VPS13C-210ENST00000561258 MOXD2PA6NHM9 499 aa10.35□□□□□ -0.75
VPS13C-210ENST00000561258 MS4A1P11836 297 aa10.35□□□□□ -0.75
VPS13C-210ENST00000561258 CCNYL3P0C7X3 344 aa10.34□□□□□ -0.75
VPS13C-210ENST00000561258 SH3BP2P78314 561 aa10.34□□□□□ -0.75
VPS13C-210ENST00000561258 TERTO14746 1132 aaKnown RBP10.33□□□□□ -0.76
VPS13C-210ENST00000561258 TTLL12Q14166 644 aaPredicted RBP10.33□□□□□ -0.76
VPS13C-210ENST00000561258 LINC01559Q495D7 138 aa10.32□□□□□ -0.76
VPS13C-210ENST00000561258 BARGINQ6ZT62 677 aa10.31□□□□□ -0.76
VPS13C-210ENST00000561258 KIFC2Q96AC6 838 aa10.31□□□□□ -0.76
VPS13C-210ENST00000561258 WIPF1O43516 503 aa10.3□□□□□ -0.76
VPS13C-210ENST00000561258 BMP1P13497 986 aa10.3□□□□□ -0.76
VPS13C-210ENST00000561258 PTPRNQ16849 979 aa10.3□□□□□ -0.76
VPS13C-210ENST00000561258 PRR7Q8TB68 274 aa10.3□□□□□ -0.76
VPS13C-210ENST00000561258 UNC93B1Q9H1C4 597 aa10.3□□□□□ -0.76
VPS13C-210ENST00000561258 EVA1BQ9NVM1 165 aa10.3□□□□□ -0.76
VPS13C-210ENST00000561258 WASF2Q9Y6W5 498 aa10.3□□□□□ -0.76
VPS13C-210ENST00000561258 ZMYND10O75800 440 aa10.29□□□□□ -0.76
VPS13C-210ENST00000561258 GIGYF2Q6Y7W6 1299 aaKnown RBP10.29□□□□□ -0.76
VPS13C-210ENST00000561258 TRIM46Q7Z4K8 759 aa10.29□□□□□ -0.76
VPS13C-210ENST00000561258 BAP1Q92560 729 aa10.29□□□□□ -0.76
VPS13C-210ENST00000561258 AMHR2Q16671 573 aa10.28□□□□□ -0.76
VPS13C-210ENST00000561258 CAPN5O15484 640 aaPredicted RBP10.27□□□□□ -0.77
VPS13C-210ENST00000561258 KCNH2Q12809 1159 aa10.27□□□□□ -0.77
VPS13C-210ENST00000561258 BEGAINQ9BUH8 593 aa10.27□□□□□ -0.77
VPS13C-210ENST00000561258 TLL2Q9Y6L7 1015 aa10.27□□□□□ -0.77
VPS13C-210ENST00000561258 MTMR2Q13614 643 aa10.26□□□□□ -0.77
VPS13C-210ENST00000561258 ZC3H15Q8WU90 426 aaKnown RBP10.26□□□□□ -0.77
VPS13C-210ENST00000561258 INSM1Q01101 510 aaPredicted RBP10.24□□□□□ -0.77
VPS13C-210ENST00000561258 ZNF511Q8NB15 262 aa10.23□□□□□ -0.77
VPS13C-210ENST00000561258 TBC1D2Q9BYX2 928 aa10.23□□□□□ -0.77
VPS13C-210ENST00000561258 STK17AQ9UEE5 414 aa10.23□□□□□ -0.77
VPS13C-210ENST00000561258 PCDHB15Q9Y5E8 787 aa10.23□□□□□ -0.77
VPS13C-210ENST00000561258 SPDYE5A6NIY4 337 aa10.22□□□□□ -0.77
VPS13C-210ENST00000561258 DESI1Q6ICB0 168 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms