RNA–Protein interactions for RNA: ENST00000561055.1

RABGGTA-221, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 2

Gene RABGGTA, Length 735 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-221ENST00000561055 FMN2Q9NZ56 1722 aa13.77□□□□□ -0.21
RABGGTA-221ENST00000561055 RGPD8O14715 1765 aaPredicted RBP13.76□□□□□ -0.21
RABGGTA-221ENST00000561055 PLEKHH1Q9ULM0 1364 aa13.76□□□□□ -0.21
RABGGTA-221ENST00000561055 UBAP1LF5GYI3 381 aa13.76□□□□□ -0.21
RABGGTA-221ENST00000561055 SOCS7O14512 581 aa13.76□□□□□ -0.21
RABGGTA-221ENST00000561055 WAPLQ7Z5K2 1190 aa13.76□□□□□ -0.21
RABGGTA-221ENST00000561055 CADPS2Q86UW7 1296 aa13.76□□□□□ -0.21
RABGGTA-221ENST00000561055 TRAK1Q9UPV9 953 aa13.76□□□□□ -0.21
RABGGTA-221ENST00000561055 ROCK2O75116 1388 aaKnown RBP13.75□□□□□ -0.21
RABGGTA-221ENST00000561055 QRICH2Q9H0J4 1663 aa13.75□□□□□ -0.21
RABGGTA-221ENST00000561055 C14orf37Q86TY3 774 aa13.74□□□□□ -0.21
RABGGTA-221ENST00000561055 PRAM1Q96QH2 718 aa13.74□□□□□ -0.21
RABGGTA-221ENST00000561055 ROBO1Q9Y6N7 1651 aa13.73□□□□□ -0.21
RABGGTA-221ENST00000561055 ATF3P18847 181 aa13.73□□□□□ -0.21
RABGGTA-221ENST00000561055 SLAIN2Q9P270 581 aa13.73□□□□□ -0.21
RABGGTA-221ENST00000561055 MST1RQ04912 1400 aa13.73□□□□□ -0.21
RABGGTA-221ENST00000561055 POGKQ9P215 609 aa13.72□□□□□ -0.21
RABGGTA-221ENST00000561055 USP32Q8NFA0 1604 aa13.7□□□□□ -0.22
RABGGTA-221ENST00000561055 ITSN1Q15811 1721 aa13.7□□□□□ -0.22
RABGGTA-221ENST00000561055 CENPJQ9HC77 1338 aaPredicted RBP13.69□□□□□ -0.22
RABGGTA-221ENST00000561055 NHSL1Q5SYE7 1610 aa13.69□□□□□ -0.22
RABGGTA-221ENST00000561055 CARD11Q9BXL7 1154 aa13.69□□□□□ -0.22
RABGGTA-221ENST00000561055 EIF3AQ14152 1382 aaKnown RBP13.69□□□□□ -0.22
RABGGTA-221ENST00000561055 SBNO2Q9Y2G9 1366 aa13.69□□□□□ -0.22
RABGGTA-221ENST00000561055 C1orf167Q5SNV9 1468 aa13.68□□□□□ -0.22
RABGGTA-221ENST00000561055 KIF1AQ12756 1690 aa13.67□□□□□ -0.22
RABGGTA-221ENST00000561055 MINK1Q8N4C8 1332 aaPredicted RBP13.66□□□□□ -0.22
RABGGTA-221ENST00000561055 ANKARQ7Z5J8 1434 aa13.66□□□□□ -0.22
RABGGTA-221ENST00000561055 TULP4Q9NRJ4 1543 aa13.66□□□□□ -0.22
RABGGTA-221ENST00000561055 AHDC1Q5TGY3 1603 aaPredicted RBP13.66□□□□□ -0.22
RABGGTA-221ENST00000561055 WASLO00401 505 aaPredicted RBP13.66□□□□□ -0.22
RABGGTA-221ENST00000561055 PIP4K2BP78356 416 aa13.66□□□□□ -0.22
RABGGTA-221ENST00000561055 SAFB2Q14151 953 aaKnown RBP eCLIP13.66□□□□□ -0.22
RABGGTA-221ENST00000561055 PHLPP1O60346 1717 aa13.66□□□□□ -0.22
RABGGTA-221ENST00000561055 TOPAZ1Q8N9V7 1692 aa13.66□□□□□ -0.22
RABGGTA-221ENST00000561055 BRINP3Q76B58 766 aa13.65□□□□□ -0.22
RABGGTA-221ENST00000561055 SLC24A1O60721 1099 aa13.63□□□□□ -0.23
RABGGTA-221ENST00000561055 COL16A1Q07092 1604 aaPredicted RBP13.62□□□□□ -0.23
RABGGTA-221ENST00000561055 HIRIP3Q9BW71 556 aaPredicted RBP13.62□□□□□ -0.23
RABGGTA-221ENST00000561055 SCAF1Q9H7N4 1312 aaKnown RBP13.62□□□□□ -0.23
RABGGTA-221ENST00000561055 ATP7BP35670 1465 aa13.61□□□□□ -0.23
RABGGTA-221ENST00000561055 USP47Q96K76 1375 aa13.61□□□□□ -0.23
RABGGTA-221ENST00000561055 ORAI2Q96SN7 254 aa13.61□□□□□ -0.23
RABGGTA-221ENST00000561055 CDK19Q9BWU1 502 aa13.61□□□□□ -0.23
RABGGTA-221ENST00000561055 EVC2Q86UK5 1308 aa13.61□□□□□ -0.23
RABGGTA-221ENST00000561055 TESK2Q96S53 571 aa13.6□□□□□ -0.23
RABGGTA-221ENST00000561055 PRR36Q9H6K5 1346 aa13.6□□□□□ -0.23
RABGGTA-221ENST00000561055 ST20-MTHFSA0A0A6YYL1 179 aa13.59□□□□□ -0.23
RABGGTA-221ENST00000561055 HSPA1LP34931 641 aa13.59□□□□□ -0.23
RABGGTA-221ENST00000561055 PUS7Q96PZ0 661 aaKnown RBP13.59□□□□□ -0.23
RABGGTA-221ENST00000561055 ESCO1Q5FWF5 840 aa13.58□□□□□ -0.24
RABGGTA-221ENST00000561055 NUDT16Q96DE0 195 aaKnown RBP13.58□□□□□ -0.24
RABGGTA-221ENST00000561055 SHPRHQ149N8 1683 aa13.58□□□□□ -0.24
RABGGTA-221ENST00000561055 AKAP12Q02952 1782 aa13.58□□□□□ -0.24
RABGGTA-221ENST00000561055 TRPM3Q9HCF6 1732 aaPredicted RBP13.57□□□□□ -0.24
RABGGTA-221ENST00000561055 NUTM2FA1L443 756 aa13.57□□□□□ -0.24
RABGGTA-221ENST00000561055 PHF8Q9UPP1 1060 aa13.57□□□□□ -0.24
RABGGTA-221ENST00000561055 CCDC61Q9Y6R9 512 aa13.57□□□□□ -0.24
RABGGTA-221ENST00000561055 SOS2Q07890 1332 aaPredicted RBP13.57□□□□□ -0.24
RABGGTA-221ENST00000561055 PXDNQ92626 1479 aa13.56□□□□□ -0.24
RABGGTA-221ENST00000561055 PLEKHG3A1L390 1219 aa13.56□□□□□ -0.24
RABGGTA-221ENST00000561055 NPHP3Q7Z494 1330 aa13.56□□□□□ -0.24
RABGGTA-221ENST00000561055 EIF4G2P78344 907 aaKnown RBP eCLIP13.55□□□□□ -0.24
RABGGTA-221ENST00000561055 POLR3AO14802 1390 aaPredicted RBP13.55□□□□□ -0.24
RABGGTA-221ENST00000561055 FOXO3O43524 673 aa13.54□□□□□ -0.24
RABGGTA-221ENST00000561055 SRPK2P78362 688 aaKnown RBP13.54□□□□□ -0.24
RABGGTA-221ENST00000561055 CABP2Q9NPB3 220 aa13.54□□□□□ -0.24
RABGGTA-221ENST00000561055 ATAD2Q6PL18 1390 aa13.54□□□□□ -0.24
RABGGTA-221ENST00000561055 COL22A1Q8NFW1 1626 aaPredicted RBP13.53□□□□□ -0.24
RABGGTA-221ENST00000561055 ALS2Q96Q42 1657 aa13.53□□□□□ -0.24
RABGGTA-221ENST00000561055 LRRC59Q96AG4 307 aaKnown RBP13.53□□□□□ -0.24
RABGGTA-221ENST00000561055 PPIP5K1Q6PFW1 1433 aa13.53□□□□□ -0.24
RABGGTA-221ENST00000561055 TMF1P82094 1093 aa13.52□□□□□ -0.25
RABGGTA-221ENST00000561055 DDX17Q92841 729 aaKnown RBP13.52□□□□□ -0.25
RABGGTA-221ENST00000561055 MON2Q7Z3U7 1717 aa13.52□□□□□ -0.25
RABGGTA-221ENST00000561055 SBNO1A3KN83 1393 aa13.51□□□□□ -0.25
RABGGTA-221ENST00000561055 JCADQ9P266 1359 aa13.51□□□□□ -0.25
RABGGTA-221ENST00000561055 HSPA5P11021 654 aaKnown RBP13.51□□□□□ -0.25
RABGGTA-221ENST00000561055 PMFBP1Q8TBY8 1022 aa13.51□□□□□ -0.25
RABGGTA-221ENST00000561055 BRD4O60885 1362 aaPredicted RBP13.5□□□□□ -0.25
RABGGTA-221ENST00000561055 PSME1Q06323 249 aa13.5□□□□□ -0.25
RABGGTA-221ENST00000561055 KRT28Q7Z3Y7 464 aa13.5□□□□□ -0.25
RABGGTA-221ENST00000561055 MARF1Q9Y4F3 1742 aaKnown RBP13.5□□□□□ -0.25
RABGGTA-221ENST00000561055 MYOM1P52179 1685 aa13.5□□□□□ -0.25
RABGGTA-221ENST00000561055 CPSF1Q10570 1443 aaKnown RBP13.49□□□□□ -0.25
RABGGTA-221ENST00000561055 NINLQ9Y2I6 1382 aa13.49□□□□□ -0.25
RABGGTA-221ENST00000561055 ACEP12821 1306 aa13.49□□□□□ -0.25
RABGGTA-221ENST00000561055 ZEB1P37275 1124 aaPredicted RBP13.49□□□□□ -0.25
RABGGTA-221ENST00000561055 CDCA8Q53HL2 280 aa13.49□□□□□ -0.25
RABGGTA-221ENST00000561055 CABP1Q9NZU7 370 aa13.49□□□□□ -0.25
RABGGTA-221ENST00000561055 PNPLA6Q8IY17 1366 aa13.48□□□□□ -0.25
RABGGTA-221ENST00000561055 CRYBG1Q9Y4K1 1723 aa13.48□□□□□ -0.25
RABGGTA-221ENST00000561055 SPATA31A3Q5VYP0 1347 aa13.48□□□□□ -0.25
RABGGTA-221ENST00000561055 NGDNQ8NEJ9 315 aaKnown RBP13.48□□□□□ -0.25
RABGGTA-221ENST00000561055 ZNF692Q9BU19 519 aaPredicted RBP13.48□□□□□ -0.25
RABGGTA-221ENST00000561055 NRKQ7Z2Y5 1582 aa13.48□□□□□ -0.25
RABGGTA-221ENST00000561055 CD163L1Q9NR16 1453 aa13.48□□□□□ -0.25
RABGGTA-221ENST00000561055 ABCA3Q99758 1704 aa13.47□□□□□ -0.25
RABGGTA-221ENST00000561055 TNS3Q68CZ2 1445 aa13.47□□□□□ -0.25
RABGGTA-221ENST00000561055 SSH2Q76I76 1423 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms