RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 FAM135BQ49AJ0 1406 aa17.46■□□□□ 0.39
SNX1-211ENST00000560829 MED14O60244 1454 aa17.46■□□□□ 0.39
SNX1-211ENST00000560829 LTKP29376 864 aa17.46■□□□□ 0.38
SNX1-211ENST00000560829 SLC12A5Q9H2X9 1139 aa17.46■□□□□ 0.38
SNX1-211ENST00000560829 ADAMTSL3P82987 1691 aa17.45■□□□□ 0.38
SNX1-211ENST00000560829 ATAD2Q6PL18 1390 aa17.45■□□□□ 0.38
SNX1-211ENST00000560829 ZBED9Q6R2W3 1325 aa17.45■□□□□ 0.38
SNX1-211ENST00000560829 SAFB2Q14151 953 aaKnown RBP eCLIP17.45■□□□□ 0.38
SNX1-211ENST00000560829 THEMISQ8N1K5 641 aaPredicted RBP17.45■□□□□ 0.38
SNX1-211ENST00000560829 ANKRD36BQ8N2N9 1353 aa17.45■□□□□ 0.38
SNX1-211ENST00000560829 TXNDC2Q86VQ3 553 aa17.44■□□□□ 0.38
SNX1-211ENST00000560829 EID1Q9Y6B2 187 aa17.44■□□□□ 0.38
SNX1-211ENST00000560829 INSRP06213 1382 aa17.44■□□□□ 0.38
SNX1-211ENST00000560829 KNDC1Q76NI1 1749 aa17.44■□□□□ 0.38
SNX1-211ENST00000560829 CABP2Q9NPB3 220 aa17.44■□□□□ 0.38
SNX1-211ENST00000560829 MINK1Q8N4C8 1332 aaPredicted RBP17.43■□□□□ 0.38
SNX1-211ENST00000560829 CPS1P31327 1500 aa17.43■□□□□ 0.38
SNX1-211ENST00000560829 NSD3Q9BZ95 1437 aa17.43■□□□□ 0.38
SNX1-211ENST00000560829 PPP2R1AP30153 589 aa17.42■□□□□ 0.38
SNX1-211ENST00000560829 USP32Q8NFA0 1604 aa17.42■□□□□ 0.38
SNX1-211ENST00000560829 RIMS1Q86UR5 1692 aaKnown RBP17.42■□□□□ 0.38
SNX1-211ENST00000560829 PLEKHH1Q9ULM0 1364 aa17.42■□□□□ 0.38
SNX1-211ENST00000560829 SRPK2P78362 688 aaKnown RBP17.41■□□□□ 0.38
SNX1-211ENST00000560829 CEP170BQ9Y4F5 1589 aaPredicted RBP17.41■□□□□ 0.38
SNX1-211ENST00000560829 WAPLQ7Z5K2 1190 aa17.4■□□□□ 0.38
SNX1-211ENST00000560829 CDK19Q9BWU1 502 aa17.39■□□□□ 0.38
SNX1-211ENST00000560829 BCANQ96GW7 911 aa17.39■□□□□ 0.37
SNX1-211ENST00000560829 TBX22Q9Y458 520 aa17.39■□□□□ 0.37
SNX1-211ENST00000560829 PLPPR3Q6T4P5 718 aa17.38■□□□□ 0.37
SNX1-211ENST00000560829 DIP2AQ14689 1571 aa17.37■□□□□ 0.37
SNX1-211ENST00000560829 NSD2O96028 1365 aa17.37■□□□□ 0.37
SNX1-211ENST00000560829 CGNL1Q0VF96 1302 aa17.37■□□□□ 0.37
SNX1-211ENST00000560829 A0A1W2PP64 1363 aa17.36■□□□□ 0.37
SNX1-211ENST00000560829 CD163L1Q9NR16 1453 aa17.36■□□□□ 0.37
SNX1-211ENST00000560829 ROBO2Q9HCK4 1378 aa17.35■□□□□ 0.37
SNX1-211ENST00000560829 TERF2IPQ9NYB0 399 aa17.35■□□□□ 0.37
SNX1-211ENST00000560829 ZNF142P52746 1687 aaPredicted RBP17.35■□□□□ 0.37
SNX1-211ENST00000560829 WASLO00401 505 aaPredicted RBP17.34■□□□□ 0.37
SNX1-211ENST00000560829 PTPRUQ92729 1446 aa17.34■□□□□ 0.37
SNX1-211ENST00000560829 BLMP54132 1417 aaPredicted RBP17.33■□□□□ 0.37
SNX1-211ENST00000560829 SLC26A8Q96RN1 970 aa17.33■□□□□ 0.36
SNX1-211ENST00000560829 ATP7BP35670 1465 aa17.32■□□□□ 0.36
SNX1-211ENST00000560829 PTCH1Q13635 1447 aa17.32■□□□□ 0.36
SNX1-211ENST00000560829 ADGRB2O60241 1585 aa17.32■□□□□ 0.36
SNX1-211ENST00000560829 PIK3R4Q99570 1358 aa17.31■□□□□ 0.36
SNX1-211ENST00000560829 MORC1Q86VD1 984 aa17.31■□□□□ 0.36
SNX1-211ENST00000560829 HDGFL2Q7Z4V5 671 aaPredicted RBP17.3■□□□□ 0.36
SNX1-211ENST00000560829 POLR3AO14802 1390 aaPredicted RBP17.3■□□□□ 0.36
SNX1-211ENST00000560829 CABP1Q9NZU7 370 aa17.29■□□□□ 0.36
SNX1-211ENST00000560829 AMOTL2Q9Y2J4 779 aa17.29■□□□□ 0.36
SNX1-211ENST00000560829 ANKLE2Q86XL3 938 aa17.27■□□□□ 0.36
SNX1-211ENST00000560829 CPSF1Q10570 1443 aaKnown RBP17.27■□□□□ 0.35
SNX1-211ENST00000560829 WDR43Q15061 677 aaKnown RBP eCLIP17.27■□□□□ 0.35
SNX1-211ENST00000560829 SMG6Q86US8 1419 aaKnown RBP17.26■□□□□ 0.35
SNX1-211ENST00000560829 NUDT16Q96DE0 195 aaKnown RBP17.26■□□□□ 0.35
SNX1-211ENST00000560829 ADAMTS8Q9UP79 889 aa17.26■□□□□ 0.35
SNX1-211ENST00000560829 CCDC61Q9Y6R9 512 aa17.26■□□□□ 0.35
SNX1-211ENST00000560829 PPIP5K1Q6PFW1 1433 aa17.25■□□□□ 0.35
SNX1-211ENST00000560829 XRN1Q8IZH2 1706 aaKnown RBP17.25■□□□□ 0.35
SNX1-211ENST00000560829 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.25■□□□□ 0.35
SNX1-211ENST00000560829 FYB1O15117 783 aa17.24■□□□□ 0.35
SNX1-211ENST00000560829 SETD1BQ9UPS6 1966 aaKnown RBP17.23■□□□□ 0.35
SNX1-211ENST00000560829 CDC42BPGQ6DT37 1551 aa17.22■□□□□ 0.35
SNX1-211ENST00000560829 PRR36Q9H6K5 1346 aa17.22■□□□□ 0.35
SNX1-211ENST00000560829 EDC4Q6P2E9 1401 aaKnown RBP17.22■□□□□ 0.35
SNX1-211ENST00000560829 NUDCQ9Y266 331 aa17.22■□□□□ 0.35
SNX1-211ENST00000560829 SUPT16HQ9Y5B9 1047 aaKnown RBP17.22■□□□□ 0.35
SNX1-211ENST00000560829 PDE3BQ13370 1112 aa17.21■□□□□ 0.35
SNX1-211ENST00000560829 GGNBP2Q9H3C7 697 aa17.2■□□□□ 0.34
SNX1-211ENST00000560829 MTHFSP49914 203 aa17.19■□□□□ 0.34
SNX1-211ENST00000560829 ZNF692Q9BU19 519 aaPredicted RBP17.19■□□□□ 0.34
SNX1-211ENST00000560829 ANKRD26Q9UPS8 1709 aa17.19■□□□□ 0.34
SNX1-211ENST00000560829 PLEKHG3A1L390 1219 aa17.18■□□□□ 0.34
SNX1-211ENST00000560829 KCNA6P17658 529 aa17.18■□□□□ 0.34
SNX1-211ENST00000560829 TNNT2P45379 298 aaPredicted RBP17.18■□□□□ 0.34
SNX1-211ENST00000560829 NEFLP07196 543 aa17.18■□□□□ 0.34
SNX1-211ENST00000560829 CFAP53Q96M91 514 aa17.18■□□□□ 0.34
SNX1-211ENST00000560829 NPHP4O75161 1426 aaPredicted RBP17.18■□□□□ 0.34
SNX1-211ENST00000560829 TOPAZ1Q8N9V7 1692 aa17.17■□□□□ 0.34
SNX1-211ENST00000560829 NCKAP5LQ9HCH0 1330 aa17.16■□□□□ 0.34
SNX1-211ENST00000560829 FKBP8Q14318 412 aa17.15■□□□□ 0.34
SNX1-211ENST00000560829 MON2Q7Z3U7 1717 aa17.15■□□□□ 0.34
SNX1-211ENST00000560829 SHPRHQ149N8 1683 aa17.15■□□□□ 0.34
SNX1-211ENST00000560829 KIF20BQ96Q89 1820 aa17.15■□□□□ 0.34
SNX1-211ENST00000560829 SENP3-EIF4A1A0A087X0R7 540 aa17.14■□□□□ 0.33
SNX1-211ENST00000560829 NGEFQ8N5V2 710 aa17.14■□□□□ 0.33
SNX1-211ENST00000560829 ANKARQ7Z5J8 1434 aa17.14■□□□□ 0.33
SNX1-211ENST00000560829 ZNF521Q96K83 1311 aa17.13■□□□□ 0.33
SNX1-211ENST00000560829 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.13■□□□□ 0.33
SNX1-211ENST00000560829 PNPLA6Q8IY17 1366 aa17.13■□□□□ 0.33
SNX1-211ENST00000560829 AKAP12Q02952 1782 aa17.13■□□□□ 0.33
SNX1-211ENST00000560829 COL3A1P02461 1466 aaPredicted RBP17.12■□□□□ 0.33
SNX1-211ENST00000560829 NKTRP30414 1462 aaKnown RBP17.12■□□□□ 0.33
SNX1-211ENST00000560829 CHD2O14647 1828 aaKnown RBP17.12■□□□□ 0.33
SNX1-211ENST00000560829 ACEP12821 1306 aa17.11■□□□□ 0.33
SNX1-211ENST00000560829 SALL2Q9Y467 1007 aaPredicted RBP17.11■□□□□ 0.33
SNX1-211ENST00000560829 AATKQ6ZMQ8 1374 aa17.11■□□□□ 0.33
SNX1-211ENST00000560829 RNF123Q5XPI4 1314 aa17.1■□□□□ 0.33
SNX1-211ENST00000560829 USP6P35125 1406 aa17.1■□□□□ 0.33
SNX1-211ENST00000560829 SSH2Q76I76 1423 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms