RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 VPS37DQ86XT2 251 aa15.93■□□□□ 0.14
CSPG4P11-201ENST00000560634 EVA1CP58658 441 aa15.92■□□□□ 0.14
CSPG4P11-201ENST00000560634 SDF4Q9BRK5 362 aa15.92■□□□□ 0.14
CSPG4P11-201ENST00000560634 PATL2C9JE40 543 aaKnown RBP15.92■□□□□ 0.14
CSPG4P11-201ENST00000560634 CCDC173Q0VFZ6 552 aa15.92■□□□□ 0.14
CSPG4P11-201ENST00000560634 PDCP20941 246 aa15.91■□□□□ 0.14
CSPG4P11-201ENST00000560634 XBP1P17861 261 aa15.9■□□□□ 0.14
CSPG4P11-201ENST00000560634 CALRP27797 417 aaKnown RBP15.9■□□□□ 0.14
CSPG4P11-201ENST00000560634 HMGN5P82970 282 aaKnown RBP15.9■□□□□ 0.14
CSPG4P11-201ENST00000560634 CCDC43Q96MW1 224 aaKnown RBP15.9■□□□□ 0.14
CSPG4P11-201ENST00000560634 BRMS1Q9HCU9 246 aa15.9■□□□□ 0.14
CSPG4P11-201ENST00000560634 TSPYL4Q9UJ04 414 aa15.9■□□□□ 0.14
CSPG4P11-201ENST00000560634 OFD1O75665 1012 aa15.89■□□□□ 0.13
CSPG4P11-201ENST00000560634 NAP1L1P55209 391 aaKnown RBP15.89■□□□□ 0.13
CSPG4P11-201ENST00000560634 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.89■□□□□ 0.13
CSPG4P11-201ENST00000560634 DCTN1Q14203 1278 aa15.89■□□□□ 0.13
CSPG4P11-201ENST00000560634 CWC15Q9P013 229 aaKnown RBP15.89■□□□□ 0.13
CSPG4P11-201ENST00000560634 CT47A1Q5JQC4 288 aaPredicted RBP15.89■□□□□ 0.13
CSPG4P11-201ENST00000560634 CCDC7Q96M83 1385 aa15.88■□□□□ 0.13
CSPG4P11-201ENST00000560634 SMARCA4P51532 1647 aa15.88■□□□□ 0.13
CSPG4P11-201ENST00000560634 DHX8Q14562 1220 aaKnown RBP15.88■□□□□ 0.13
CSPG4P11-201ENST00000560634 NINLQ9Y2I6 1382 aa15.88■□□□□ 0.13
CSPG4P11-201ENST00000560634 CCP110O43303 1012 aa15.88■□□□□ 0.13
CSPG4P11-201ENST00000560634 RAD21O60216 631 aa15.88■□□□□ 0.13
CSPG4P11-201ENST00000560634 GNAI3P08754 354 aa15.88■□□□□ 0.13
CSPG4P11-201ENST00000560634 TRAK2O60296 914 aa15.87■□□□□ 0.13
CSPG4P11-201ENST00000560634 R3HCC1Q9Y3T6 440 aaKnown RBP15.87■□□□□ 0.13
CSPG4P11-201ENST00000560634 UBTFL1P0CB47 393 aaPredicted RBP15.87■□□□□ 0.13
CSPG4P11-201ENST00000560634 CLASRPQ8N2M8 674 aaKnown RBP15.86■□□□□ 0.13
CSPG4P11-201ENST00000560634 BRD4O60885 1362 aaPredicted RBP15.86■□□□□ 0.13
CSPG4P11-201ENST00000560634 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.86■□□□□ 0.13
CSPG4P11-201ENST00000560634 CNTROBQ8N137 903 aa15.86■□□□□ 0.13
CSPG4P11-201ENST00000560634 NECTIN2Q92692 538 aa15.86■□□□□ 0.13
CSPG4P11-201ENST00000560634 MIA2Q96PC5 1412 aa15.86■□□□□ 0.13
CSPG4P11-201ENST00000560634 CCDC66A2RUB6 948 aa15.86■□□□□ 0.13
CSPG4P11-201ENST00000560634 ODF2Q5BJF6 829 aa15.86■□□□□ 0.13
CSPG4P11-201ENST00000560634 MYO6Q9UM54 1294 aa15.86■□□□□ 0.13
CSPG4P11-201ENST00000560634 RDXP35241 583 aaKnown RBP15.85■□□□□ 0.13
CSPG4P11-201ENST00000560634 TRIM5Q9C035 493 aa15.85■□□□□ 0.13
CSPG4P11-201ENST00000560634 KINO60870 393 aaKnown RBP15.85■□□□□ 0.13
CSPG4P11-201ENST00000560634 RABEP1Q15276 862 aa15.85■□□□□ 0.13
CSPG4P11-201ENST00000560634 KIF7Q2M1P5 1343 aa15.85■□□□□ 0.13
CSPG4P11-201ENST00000560634 HIP1O00291 1037 aa15.84■□□□□ 0.13
CSPG4P11-201ENST00000560634 CCDC191Q8NCU4 936 aa15.84■□□□□ 0.13
CSPG4P11-201ENST00000560634 WASHC4Q2M389 1173 aa15.84■□□□□ 0.13
CSPG4P11-201ENST00000560634 NEUROD6Q96NK8 337 aa15.84■□□□□ 0.13
CSPG4P11-201ENST00000560634 MYOM3Q5VTT5 1437 aa15.84■□□□□ 0.13
CSPG4P11-201ENST00000560634 PIP4K2AP48426 406 aaPredicted RBP15.84■□□□□ 0.13
CSPG4P11-201ENST00000560634 RIC3Q7Z5B4 369 aa15.84■□□□□ 0.13
CSPG4P11-201ENST00000560634 PANK1Q8TE04 598 aa15.84■□□□□ 0.13
CSPG4P11-201ENST00000560634 RAPGEF4Q8WZA2 1011 aa15.84■□□□□ 0.13
CSPG4P11-201ENST00000560634 SART3Q15020 963 aaKnown RBP15.83■□□□□ 0.13
CSPG4P11-201ENST00000560634 FILIP1LQ4L180 1135 aa15.83■□□□□ 0.12
CSPG4P11-201ENST00000560634 PSME1Q06323 249 aa15.83■□□□□ 0.12
CSPG4P11-201ENST00000560634 ANO8Q9HCE9 1232 aaPredicted RBP15.83■□□□□ 0.12
CSPG4P11-201ENST00000560634 PDILTQ8N807 584 aa15.83■□□□□ 0.12
CSPG4P11-201ENST00000560634 RNF214Q8ND24 703 aa15.83■□□□□ 0.12
CSPG4P11-201ENST00000560634 FBXW7Q969H0 707 aa15.83■□□□□ 0.12
CSPG4P11-201ENST00000560634 CNTLNQ9NXG0 1405 aa15.83■□□□□ 0.12
CSPG4P11-201ENST00000560634 H0YHG0 523 aa15.82■□□□□ 0.12
CSPG4P11-201ENST00000560634 EPS15P42566 896 aa15.82■□□□□ 0.12
CSPG4P11-201ENST00000560634 CAGE1Q8TC20 777 aa15.82■□□□□ 0.12
CSPG4P11-201ENST00000560634 SMARCE1Q969G3 411 aa15.82■□□□□ 0.12
CSPG4P11-201ENST00000560634 PDE3AQ14432 1141 aa15.82■□□□□ 0.12
CSPG4P11-201ENST00000560634 TSPY26PQ9H489 355 aa15.82■□□□□ 0.12
CSPG4P11-201ENST00000560634 PTPRGP23470 1445 aa15.81■□□□□ 0.12
CSPG4P11-201ENST00000560634 NEK4P51957 841 aa15.81■□□□□ 0.12
CSPG4P11-201ENST00000560634 CAVIN1Q6NZI2 390 aaKnown RBP15.81■□□□□ 0.12
CSPG4P11-201ENST00000560634 GCC1Q96CN9 775 aa15.81■□□□□ 0.12
CSPG4P11-201ENST00000560634 FSD1Q9BTV5 496 aa15.81■□□□□ 0.12
CSPG4P11-201ENST00000560634 ZNF396Q96N95 335 aaPredicted RBP15.8■□□□□ 0.12
CSPG4P11-201ENST00000560634 CWC22Q9HCG8 908 aaKnown RBP15.8■□□□□ 0.12
CSPG4P11-201ENST00000560634 WASHC2AQ641Q2 1341 aa15.8■□□□□ 0.12
CSPG4P11-201ENST00000560634 JMYQ8N9B5 988 aa15.79■□□□□ 0.12
CSPG4P11-201ENST00000560634 TBC1D2BQ9UPU7 963 aa15.79■□□□□ 0.12
CSPG4P11-201ENST00000560634 SURF6O75683 361 aaKnown RBP15.78■□□□□ 0.12
CSPG4P11-201ENST00000560634 FOSBP53539 338 aa15.78■□□□□ 0.12
CSPG4P11-201ENST00000560634 CCDC30Q5VVM6 783 aa15.78■□□□□ 0.12
CSPG4P11-201ENST00000560634 MSH5O43196 834 aa15.78■□□□□ 0.12
CSPG4P11-201ENST00000560634 RBM33Q96EV2 1170 aaKnown RBP15.78■□□□□ 0.12
CSPG4P11-201ENST00000560634 HMOX1P09601 288 aa15.78■□□□□ 0.12
CSPG4P11-201ENST00000560634 TXLNAP40222 546 aa15.78■□□□□ 0.12
CSPG4P11-201ENST00000560634 ERC1Q8IUD2 1116 aa15.78■□□□□ 0.12
CSPG4P11-201ENST00000560634 TCP11L2Q8N4U5 519 aa15.78■□□□□ 0.12
CSPG4P11-201ENST00000560634 HSP90AB2PQ58FF8 381 aa15.77■□□□□ 0.12
CSPG4P11-201ENST00000560634 ADAMTS8Q9UP79 889 aa15.77■□□□□ 0.12
CSPG4P11-201ENST00000560634 PRPF40AO75400 957 aaKnown RBP15.77■□□□□ 0.11
CSPG4P11-201ENST00000560634 GAS2L2Q8NHY3 880 aa15.77■□□□□ 0.11
CSPG4P11-201ENST00000560634 SMC2O95347 1197 aa15.76■□□□□ 0.11
CSPG4P11-201ENST00000560634 FANCD2Q9BXW9 1451 aa15.76■□□□□ 0.11
CSPG4P11-201ENST00000560634 SYTL4Q96C24 671 aaPredicted RBP15.76■□□□□ 0.11
CSPG4P11-201ENST00000560634 GGNBP2Q9H3C7 697 aa15.76■□□□□ 0.11
CSPG4P11-201ENST00000560634 MAGEC2Q9UBF1 373 aaPredicted RBP15.76■□□□□ 0.11
CSPG4P11-201ENST00000560634 PDZRN3Q9UPQ7 1066 aa15.76■□□□□ 0.11
CSPG4P11-201ENST00000560634 STK38Q15208 465 aa15.75■□□□□ 0.11
CSPG4P11-201ENST00000560634 ZFYVE27Q5T4F4 411 aa15.75■□□□□ 0.11
CSPG4P11-201ENST00000560634 AEBP1Q8IUX7 1158 aa15.75■□□□□ 0.11
CSPG4P11-201ENST00000560634 MTHFSP49914 203 aa15.75■□□□□ 0.11
CSPG4P11-201ENST00000560634 LEKR1Q6ZMV7 388 aa15.75■□□□□ 0.11
CSPG4P11-201ENST00000560634 LUC7LQ9NQ29 371 aaKnown RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms