RNA–Protein interactions for RNA: ENST00000560444.1

PIF1-208, Transcript of PIF1 5'-to-3' DNA helicase, human

TSL 2

Gene PIF1, Length 1,631 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PIF1-208	ENST00000560444	PPP2R1A	P30153	589 aa		32.03	■■■□□ 2.72
PIF1-208	ENST00000560444	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.02	■■■□□ 2.72
PIF1-208	ENST00000560444	ATAD2	Q6PL18	1390 aa		32	■■■□□ 2.71
PIF1-208	ENST00000560444	PLEKHG1	Q9ULL1	1385 aa		32	■■■□□ 2.71
PIF1-208	ENST00000560444	CABP2	Q9NPB3	220 aa		31.99	■■■□□ 2.71
PIF1-208	ENST00000560444	EID1	Q9Y6B2	187 aa		31.98	■■■□□ 2.71
PIF1-208	ENST00000560444	MET	P08581	1390 aa		31.98	■■■□□ 2.71
PIF1-208	ENST00000560444	ANKRD36B	Q8N2N9	1353 aa		31.98	■■■□□ 2.71
PIF1-208	ENST00000560444	MINK1	Q8N4C8	1332 aa	Predicted RBP	31.97	■■■□□ 2.71
PIF1-208	ENST00000560444	SRPK2	P78362	688 aa	Known RBP	31.97	■■■□□ 2.71
PIF1-208	ENST00000560444	THEMIS	Q8N1K5	641 aa	Predicted RBP	31.97	■■■□□ 2.71
PIF1-208	ENST00000560444	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	31.96	■■■□□ 2.71
PIF1-208	ENST00000560444	SLIT1	O75093	1534 aa		31.96	■■■□□ 2.71
PIF1-208	ENST00000560444	KDM4F	A0A1W2PPD8	638 aa		31.96	■■■□□ 2.71
PIF1-208	ENST00000560444	NSD3	Q9BZ95	1437 aa		31.96	■■■□□ 2.71
PIF1-208	ENST00000560444	ARHGAP23	Q9P227	1491 aa		31.95	■■■□□ 2.71
PIF1-208	ENST00000560444	TXNDC2	Q86VQ3	553 aa		31.95	■■■□□ 2.71
PIF1-208	ENST00000560444	BCAN	Q96GW7	911 aa		31.95	■■■□□ 2.71
PIF1-208	ENST00000560444	TECPR2	O15040	1411 aa		31.95	■■■□□ 2.71
PIF1-208	ENST00000560444	FAM135B	Q49AJ0	1406 aa		31.94	■■■□□ 2.7
PIF1-208	ENST00000560444	LTK	P29376	864 aa		31.93	■■■□□ 2.7
PIF1-208	ENST00000560444	USP32	Q8NFA0	1604 aa		31.92	■■■□□ 2.7
PIF1-208	ENST00000560444	CDK19	Q9BWU1	502 aa		31.92	■■■□□ 2.7
PIF1-208	ENST00000560444	ADAMTS13	Q76LX8	1427 aa		31.91	■■■□□ 2.7
PIF1-208	ENST00000560444	SETD1B	Q9UPS6	1966 aa	Known RBP	31.91	■■■□□ 2.7
PIF1-208	ENST00000560444	CGNL1	Q0VF96	1302 aa		31.9	■■■□□ 2.7
PIF1-208	ENST00000560444	WAPL	Q7Z5K2	1190 aa		31.89	■■■□□ 2.7
PIF1-208	ENST00000560444	KNDC1	Q76NI1	1749 aa		31.89	■■■□□ 2.7
PIF1-208	ENST00000560444	NSD2	O96028	1365 aa		31.87	■■■□□ 2.69
PIF1-208	ENST00000560444	TERF2IP	Q9NYB0	399 aa		31.87	■■■□□ 2.69
PIF1-208	ENST00000560444	ZNF142	P52746	1687 aa	Predicted RBP	31.87	■■■□□ 2.69
PIF1-208	ENST00000560444	MED14	O60244	1454 aa		31.86	■■■□□ 2.69
PIF1-208	ENST00000560444	PLEKHH1	Q9ULM0	1364 aa		31.86	■■■□□ 2.69
PIF1-208	ENST00000560444	CPS1	P31327	1500 aa		31.85	■■■□□ 2.69
PIF1-208	ENST00000560444	MORC1	Q86VD1	984 aa		31.83	■■■□□ 2.69
PIF1-208	ENST00000560444	TBX22	Q9Y458	520 aa		31.82	■■■□□ 2.69
PIF1-208	ENST00000560444	BLM	P54132	1417 aa	Predicted RBP	31.82	■■■□□ 2.68
PIF1-208	ENST00000560444	NEFL	P07196	543 aa		31.81	■■■□□ 2.68
PIF1-208	ENST00000560444	SUPT16H	Q9Y5B9	1047 aa	Known RBP	31.81	■■■□□ 2.68
PIF1-208	ENST00000560444		A0A1W2PP64	1363 aa		31.8	■■■□□ 2.68
PIF1-208	ENST00000560444	WASL	O00401	505 aa	Predicted RBP	31.79	■■■□□ 2.68
PIF1-208	ENST00000560444	WDR43	Q15061	677 aa	Known RBP eCLIP	31.79	■■■□□ 2.68
PIF1-208	ENST00000560444	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	31.79	■■■□□ 2.68
PIF1-208	ENST00000560444	SMG6	Q86US8	1419 aa	Known RBP	31.78	■■■□□ 2.68
PIF1-208	ENST00000560444	CD163L1	Q9NR16	1453 aa		31.75	■■■□□ 2.67
PIF1-208	ENST00000560444	ADAMTS8	Q9UP79	889 aa		31.75	■■■□□ 2.67
PIF1-208	ENST00000560444	POLR3A	O14802	1390 aa	Predicted RBP	31.75	■■■□□ 2.67
PIF1-208	ENST00000560444	DIP2A	Q14689	1571 aa		31.75	■■■□□ 2.67
PIF1-208	ENST00000560444	CABP1	Q9NZU7	370 aa		31.75	■■■□□ 2.67
PIF1-208	ENST00000560444	PDE3B	Q13370	1112 aa		31.72	■■■□□ 2.67
PIF1-208	ENST00000560444	SLC26A8	Q96RN1	970 aa		31.72	■■■□□ 2.67
PIF1-208	ENST00000560444	NUDC	Q9Y266	331 aa		31.72	■■■□□ 2.67
PIF1-208	ENST00000560444	ROBO2	Q9HCK4	1378 aa		31.72	■■■□□ 2.67
PIF1-208	ENST00000560444	ATP7B	P35670	1465 aa		31.72	■■■□□ 2.67
PIF1-208	ENST00000560444	ANKLE2	Q86XL3	938 aa		31.71	■■■□□ 2.67
PIF1-208	ENST00000560444	FKBP8	Q14318	412 aa		31.71	■■■□□ 2.67
PIF1-208	ENST00000560444	PTPRU	Q92729	1446 aa		31.67	■■■□□ 2.66
PIF1-208	ENST00000560444	AMOTL2	Q9Y2J4	779 aa		31.66	■■■□□ 2.66
PIF1-208	ENST00000560444	NUDT16	Q96DE0	195 aa	Known RBP	31.65	■■■□□ 2.66
PIF1-208	ENST00000560444	PIK3R4	Q99570	1358 aa		31.65	■■■□□ 2.66
PIF1-208	ENST00000560444	CCDC61	Q9Y6R9	512 aa		31.64	■■■□□ 2.66
PIF1-208	ENST00000560444	ADGRB2	O60241	1585 aa		31.64	■■■□□ 2.66
PIF1-208	ENST00000560444	FYB1	O15117	783 aa		31.64	■■■□□ 2.65
PIF1-208	ENST00000560444	PTCH1	Q13635	1447 aa		31.63	■■■□□ 2.65
PIF1-208	ENST00000560444	CPSF1	Q10570	1443 aa	Known RBP	31.61	■■■□□ 2.65
PIF1-208	ENST00000560444	PPIP5K1	Q6PFW1	1433 aa		31.61	■■■□□ 2.65
PIF1-208	ENST00000560444	CFAP53	Q96M91	514 aa		31.61	■■■□□ 2.65
PIF1-208	ENST00000560444	TNNT2	P45379	298 aa	Predicted RBP	31.6	■■■□□ 2.65
PIF1-208	ENST00000560444	NCKAP5L	Q9HCH0	1330 aa		31.59	■■■□□ 2.65
PIF1-208	ENST00000560444	MTHFS	P49914	203 aa		31.59	■■■□□ 2.65
PIF1-208	ENST00000560444	ERICH6B	Q5W0A0	696 aa		31.57	■■■□□ 2.64
PIF1-208	ENST00000560444	GGNBP2	Q9H3C7	697 aa		31.57	■■■□□ 2.64
PIF1-208	ENST00000560444	NGEF	Q8N5V2	710 aa		31.57	■■■□□ 2.64
PIF1-208	ENST00000560444	ZNF692	Q9BU19	519 aa	Predicted RBP	31.57	■■■□□ 2.64
PIF1-208	ENST00000560444	SENP3-EIF4A1	A0A087X0R7	540 aa		31.56	■■■□□ 2.64
PIF1-208	ENST00000560444	HSPA2	P54652	639 aa		31.56	■■■□□ 2.64
PIF1-208	ENST00000560444	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	31.55	■■■□□ 2.64
PIF1-208	ENST00000560444	EDC4	Q6P2E9	1401 aa	Known RBP	31.55	■■■□□ 2.64
PIF1-208	ENST00000560444	ANKRD26	Q9UPS8	1709 aa		31.54	■■■□□ 2.64
PIF1-208	ENST00000560444	SALL2	Q9Y467	1007 aa	Predicted RBP	31.54	■■■□□ 2.64
PIF1-208	ENST00000560444	NPHP4	O75161	1426 aa	Predicted RBP	31.53	■■■□□ 2.64
PIF1-208	ENST00000560444	CDC42BPG	Q6DT37	1551 aa		31.52	■■■□□ 2.64
PIF1-208	ENST00000560444	LMTK3	Q96Q04	1460 aa		31.51	■■■□□ 2.63
PIF1-208	ENST00000560444	PRR36	Q9H6K5	1346 aa		31.51	■■■□□ 2.63
PIF1-208	ENST00000560444	XRN1	Q8IZH2	1706 aa	Known RBP	31.5	■■■□□ 2.63
PIF1-208	ENST00000560444	PLEKHG3	A1L390	1219 aa		31.49	■■■□□ 2.63
PIF1-208	ENST00000560444	RNF123	Q5XPI4	1314 aa		31.48	■■■□□ 2.63
PIF1-208	ENST00000560444	KIF20B	Q96Q89	1820 aa		31.47	■■■□□ 2.63
PIF1-208	ENST00000560444	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	31.46	■■■□□ 2.63
PIF1-208	ENST00000560444	SHPRH	Q149N8	1683 aa		31.45	■■■□□ 2.63
PIF1-208	ENST00000560444	ZNF521	Q96K83	1311 aa		31.45	■■■□□ 2.62
PIF1-208	ENST00000560444	CCDC146	Q8IYE0	955 aa		31.43	■■■□□ 2.62
PIF1-208	ENST00000560444	KCNA6	P17658	529 aa		31.42	■■■□□ 2.62
PIF1-208	ENST00000560444	MON2	Q7Z3U7	1717 aa		31.41	■■■□□ 2.62
PIF1-208	ENST00000560444	APAF1	O14727	1248 aa		31.41	■■■□□ 2.62
PIF1-208	ENST00000560444	RUNDC1	Q96C34	613 aa		31.41	■■■□□ 2.62
PIF1-208	ENST00000560444	CDCA7L	Q96GN5	454 aa		31.4	■■■□□ 2.62
PIF1-208	ENST00000560444	AKAP12	Q02952	1782 aa		31.4	■■■□□ 2.62
PIF1-208	ENST00000560444	TOPAZ1	Q8N9V7	1692 aa		31.4	■■■□□ 2.62
PIF1-208	ENST00000560444	PNPLA6	Q8IY17	1366 aa		31.39	■■■□□ 2.62

Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms