RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CDC42BPGQ6DT37 1551 aa30.98■■■□□ 2.55
SNX1-210ENST00000560260 POGKQ9P215 609 aa30.98■■■□□ 2.55
SNX1-210ENST00000560260 QRICH2Q9H0J4 1663 aa30.97■■■□□ 2.55
SNX1-210ENST00000560260 DCCP43146 1447 aa30.96■■■□□ 2.55
SNX1-210ENST00000560260 C19orf44Q9H6X5 657 aa30.96■■■□□ 2.55
SNX1-210ENST00000560260 CENPJQ9HC77 1338 aaPredicted RBP30.92■■■□□ 2.54
SNX1-210ENST00000560260 EIF3AQ14152 1382 aaKnown RBP30.91■■■□□ 2.54
SNX1-210ENST00000560260 MINK1Q8N4C8 1332 aaPredicted RBP30.91■■■□□ 2.54
SNX1-210ENST00000560260 UBAP1LF5GYI3 381 aa30.9■■■□□ 2.54
SNX1-210ENST00000560260 FMN2Q9NZ56 1722 aa30.9■■■□□ 2.54
SNX1-210ENST00000560260 USP47Q96K76 1375 aa30.89■■■□□ 2.54
SNX1-210ENST00000560260 HIRIP3Q9BW71 556 aaPredicted RBP30.89■■■□□ 2.54
SNX1-210ENST00000560260 MST1RQ04912 1400 aa30.88■■■□□ 2.53
SNX1-210ENST00000560260 ATF3P18847 181 aa30.85■■■□□ 2.53
SNX1-210ENST00000560260 CADPS2Q86UW7 1296 aa30.85■■■□□ 2.53
SNX1-210ENST00000560260 TULP4Q9NRJ4 1543 aa30.85■■■□□ 2.53
SNX1-210ENST00000560260 TOM1O60784 492 aa30.82■■■□□ 2.52
SNX1-210ENST00000560260 USP32Q8NFA0 1604 aa30.82■■■□□ 2.52
SNX1-210ENST00000560260 C1orf167Q5SNV9 1468 aa30.81■■■□□ 2.52
SNX1-210ENST00000560260 SBNO2Q9Y2G9 1366 aa30.79■■■□□ 2.52
SNX1-210ENST00000560260 ST20-MTHFSA0A0A6YYL1 179 aa30.79■■■□□ 2.52
SNX1-210ENST00000560260 ROBO1Q9Y6N7 1651 aa30.79■■■□□ 2.52
SNX1-210ENST00000560260 SLAIN2Q9P270 581 aa30.78■■■□□ 2.52
SNX1-210ENST00000560260 WASLO00401 505 aaPredicted RBP30.77■■■□□ 2.52
SNX1-210ENST00000560260 NUTM2FA1L443 756 aa30.76■■■□□ 2.52
SNX1-210ENST00000560260 PIP4K2BP78356 416 aa30.76■■■□□ 2.52
SNX1-210ENST00000560260 TESK2Q96S53 571 aa30.76■■■□□ 2.52
SNX1-210ENST00000560260 RGPD8O14715 1765 aaPredicted RBP30.76■■■□□ 2.51
SNX1-210ENST00000560260 FBXO41Q8TF61 875 aa30.75■■■□□ 2.51
SNX1-210ENST00000560260 PRR36Q9H6K5 1346 aa30.74■■■□□ 2.51
SNX1-210ENST00000560260 ATP7BP35670 1465 aa30.73■■■□□ 2.51
SNX1-210ENST00000560260 ANKARQ7Z5J8 1434 aa30.72■■■□□ 2.51
SNX1-210ENST00000560260 CDK19Q9BWU1 502 aa30.72■■■□□ 2.51
SNX1-210ENST00000560260 SCAF1Q9H7N4 1312 aaKnown RBP30.71■■■□□ 2.51
SNX1-210ENST00000560260 HSPA5P11021 654 aaKnown RBP30.71■■■□□ 2.51
SNX1-210ENST00000560260 TOPAZ1Q8N9V7 1692 aa30.7■■■□□ 2.5
SNX1-210ENST00000560260 BRINP3Q76B58 766 aa30.7■■■□□ 2.5
SNX1-210ENST00000560260 ORAI2Q96SN7 254 aa30.69■■■□□ 2.5
SNX1-210ENST00000560260 EIF4G2P78344 907 aaKnown RBP eCLIP30.68■■■□□ 2.5
SNX1-210ENST00000560260 CABP2Q9NPB3 220 aa30.67■■■□□ 2.5
SNX1-210ENST00000560260 EVC2Q86UK5 1308 aa30.66■■■□□ 2.5
SNX1-210ENST00000560260 DISP3Q9P2K9 1392 aa30.65■■■□□ 2.5
SNX1-210ENST00000560260 NHSL1Q5SYE7 1610 aa30.65■■■□□ 2.5
SNX1-210ENST00000560260 ITSN1Q15811 1721 aa30.64■■■□□ 2.5
SNX1-210ENST00000560260 KIF1AQ12756 1690 aa30.63■■■□□ 2.49
SNX1-210ENST00000560260 ZEB1P37275 1124 aaPredicted RBP30.63■■■□□ 2.49
SNX1-210ENST00000560260 SRPK2P78362 688 aaKnown RBP30.63■■■□□ 2.49
SNX1-210ENST00000560260 NUDT16Q96DE0 195 aaKnown RBP30.63■■■□□ 2.49
SNX1-210ENST00000560260 AHDC1Q5TGY3 1603 aaPredicted RBP30.62■■■□□ 2.49
SNX1-210ENST00000560260 ESCO1Q5FWF5 840 aa30.62■■■□□ 2.49
SNX1-210ENST00000560260 DDX17Q92841 729 aaKnown RBP30.58■■■□□ 2.49
SNX1-210ENST00000560260 PHLPP1O60346 1717 aa30.57■■■□□ 2.48
SNX1-210ENST00000560260 PHF8Q9UPP1 1060 aa30.56■■■□□ 2.48
SNX1-210ENST00000560260 COL16A1Q07092 1604 aaPredicted RBP30.56■■■□□ 2.48
SNX1-210ENST00000560260 PPIP5K1Q6PFW1 1433 aa30.55■■■□□ 2.48
SNX1-210ENST00000560260 ILDR1Q86SU0 546 aaPredicted RBP30.54■■■□□ 2.48
SNX1-210ENST00000560260 PMFBP1Q8TBY8 1022 aa30.54■■■□□ 2.48
SNX1-210ENST00000560260 HSPA1LP34931 641 aa30.53■■■□□ 2.48
SNX1-210ENST00000560260 TMF1P82094 1093 aa30.53■■■□□ 2.48
SNX1-210ENST00000560260 CCDC61Q9Y6R9 512 aa30.53■■■□□ 2.48
SNX1-210ENST00000560260 ATAD2Q6PL18 1390 aa30.52■■■□□ 2.48
SNX1-210ENST00000560260 PXDNQ92626 1479 aa30.52■■■□□ 2.48
SNX1-210ENST00000560260 FOXO3O43524 673 aa30.49■■■□□ 2.47
SNX1-210ENST00000560260 SLC24A1O60721 1099 aa30.48■■■□□ 2.47
SNX1-210ENST00000560260 MYOM1P52179 1685 aa30.48■■■□□ 2.47
SNX1-210ENST00000560260 PLEKHG3A1L390 1219 aa30.47■■■□□ 2.47
SNX1-210ENST00000560260 PUS7Q96PZ0 661 aaKnown RBP30.47■■■□□ 2.47
SNX1-210ENST00000560260 POLR3AO14802 1390 aaPredicted RBP30.47■■■□□ 2.47
SNX1-210ENST00000560260 C11orf95C9JLR9 678 aaPredicted RBP30.47■■■□□ 2.47
SNX1-210ENST00000560260 XPCQ01831 940 aaPredicted RBP30.47■■■□□ 2.47
SNX1-210ENST00000560260 CABP1Q9NZU7 370 aa30.47■■■□□ 2.47
SNX1-210ENST00000560260 NPHP3Q7Z494 1330 aa30.46■■■□□ 2.47
SNX1-210ENST00000560260 SOS2Q07890 1332 aaPredicted RBP30.45■■■□□ 2.47
SNX1-210ENST00000560260 TRPM3Q9HCF6 1732 aaPredicted RBP30.45■■■□□ 2.46
SNX1-210ENST00000560260 ACEP12821 1306 aa30.45■■■□□ 2.46
SNX1-210ENST00000560260 CD163L1Q9NR16 1453 aa30.44■■■□□ 2.46
SNX1-210ENST00000560260 AKAP12Q02952 1782 aa30.43■■■□□ 2.46
SNX1-210ENST00000560260 NGDNQ8NEJ9 315 aaKnown RBP30.42■■■□□ 2.46
SNX1-210ENST00000560260 CDCA8Q53HL2 280 aa30.39■■■□□ 2.46
SNX1-210ENST00000560260 KRT28Q7Z3Y7 464 aa30.39■■■□□ 2.46
SNX1-210ENST00000560260 SLC12A5Q9H2X9 1139 aa30.39■■■□□ 2.46
SNX1-210ENST00000560260 CPSF1Q10570 1443 aaKnown RBP30.38■■■□□ 2.45
SNX1-210ENST00000560260 MON2Q7Z3U7 1717 aa30.38■■■□□ 2.45
SNX1-210ENST00000560260 NRKQ7Z2Y5 1582 aa30.37■■■□□ 2.45
SNX1-210ENST00000560260 TMC1Q8TDI8 760 aa30.37■■■□□ 2.45
SNX1-210ENST00000560260 NINLQ9Y2I6 1382 aa30.36■■■□□ 2.45
SNX1-210ENST00000560260 KIF7Q2M1P5 1343 aa30.35■■■□□ 2.45
SNX1-210ENST00000560260 PSME1Q06323 249 aa30.35■■■□□ 2.45
SNX1-210ENST00000560260 USP6P35125 1406 aa30.35■■■□□ 2.45
SNX1-210ENST00000560260 ALS2Q96Q42 1657 aa30.35■■■□□ 2.45
SNX1-210ENST00000560260 POLR3GLQ9BT43 218 aa30.34■■■□□ 2.45
SNX1-210ENST00000560260 SHPRHQ149N8 1683 aa30.34■■■□□ 2.45
SNX1-210ENST00000560260 A0A1W2PP64 1363 aa30.34■■■□□ 2.45
SNX1-210ENST00000560260 SBNO1A3KN83 1393 aa30.34■■■□□ 2.45
SNX1-210ENST00000560260 TNS3Q68CZ2 1445 aa30.33■■■□□ 2.45
SNX1-210ENST00000560260 SSH2Q76I76 1423 aa30.32■■■□□ 2.44
SNX1-210ENST00000560260 PNPLA6Q8IY17 1366 aa30.31■■■□□ 2.44
SNX1-210ENST00000560260 SPATA31A3Q5VYP0 1347 aa30.31■■■□□ 2.44
SNX1-210ENST00000560260 CCDC7Q96M83 1385 aa30.3■■■□□ 2.44
SNX1-210ENST00000560260 WASHC2AQ641Q2 1341 aa30.3■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms