RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 PKD2L1Q9P0L9 805 aa7.5□□□□□ -1.21
VPS13C-205ENST00000558088 CLCN1P35523 988 aa7.49□□□□□ -1.21
VPS13C-205ENST00000558088 TTC24A2A3L6 582 aaPredicted RBP7.48□□□□□ -1.21
VPS13C-205ENST00000558088 CCDC102AQ96A19 550 aa7.48□□□□□ -1.21
VPS13C-205ENST00000558088 USB1Q9BQ65 265 aaKnown RBP7.48□□□□□ -1.21
VPS13C-205ENST00000558088 GPCPD1Q9NPB8 672 aa7.47□□□□□ -1.21
VPS13C-205ENST00000558088 ST8SIA5O15466 376 aa7.46□□□□□ -1.22
VPS13C-205ENST00000558088 MMP16P51512 607 aa7.46□□□□□ -1.22
VPS13C-205ENST00000558088 TRIM32Q13049 653 aa7.46□□□□□ -1.22
VPS13C-205ENST00000558088 NUTM1Q86Y26 1132 aa7.46□□□□□ -1.22
VPS13C-205ENST00000558088 ZNF775Q96BV0 537 aaPredicted RBP7.46□□□□□ -1.22
VPS13C-205ENST00000558088 AAASQ9NRG9 546 aa7.45□□□□□ -1.22
VPS13C-205ENST00000558088 TOR4AQ9NXH8 423 aa7.45□□□□□ -1.22
VPS13C-205ENST00000558088 WNT7AO00755 349 aa7.44□□□□□ -1.22
VPS13C-205ENST00000558088 AXIN1O15169 862 aa7.44□□□□□ -1.22
VPS13C-205ENST00000558088 HOXA2O43364 376 aa7.44□□□□□ -1.22
VPS13C-205ENST00000558088 DXOO77932 396 aaKnown RBP7.44□□□□□ -1.22
VPS13C-205ENST00000558088 CTC1Q2NKJ3 1217 aa7.44□□□□□ -1.22
VPS13C-205ENST00000558088 CRIPAKQ8N1N5 446 aa7.44□□□□□ -1.22
VPS13C-205ENST00000558088 CCDC24Q8N4L8 307 aa7.44□□□□□ -1.22
VPS13C-205ENST00000558088 REPIN1Q9BWE0 567 aaKnown RBP7.44□□□□□ -1.22
VPS13C-205ENST00000558088 FAM217BQ9NTX9 383 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-205ENST00000558088 AVPP01185 164 aa7.42□□□□□ -1.22
VPS13C-205ENST00000558088 SNIP1Q8TAD8 396 aaKnown RBP7.42□□□□□ -1.22
VPS13C-205ENST00000558088 POTECB2RU33 542 aa7.41□□□□□ -1.22
VPS13C-205ENST00000558088 HLA-CQ95604 372 aa7.41□□□□□ -1.22
VPS13C-205ENST00000558088 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.4□□□□□ -1.22
VPS13C-205ENST00000558088 JUNDP17535 347 aa7.39□□□□□ -1.23
VPS13C-205ENST00000558088 WNT7BP56706 349 aa7.39□□□□□ -1.23
VPS13C-205ENST00000558088 TTLL12Q14166 644 aaPredicted RBP7.39□□□□□ -1.23
VPS13C-205ENST00000558088 RETREG3Q86VR2 466 aa7.39□□□□□ -1.23
VPS13C-205ENST00000558088 MRGPRX2Q96LB1 330 aa7.39□□□□□ -1.23
VPS13C-205ENST00000558088 C11orf95C9JLR9 678 aaPredicted RBP7.38□□□□□ -1.23
VPS13C-205ENST00000558088 C6orf229H3BNL8 230 aa7.38□□□□□ -1.23
VPS13C-205ENST00000558088 SMCPP49901 116 aaPredicted RBP7.38□□□□□ -1.23
VPS13C-205ENST00000558088 GUCA2AQ02747 115 aa7.38□□□□□ -1.23
VPS13C-205ENST00000558088 FDX1P10109 184 aa7.37□□□□□ -1.23
VPS13C-205ENST00000558088 NUDT12Q9BQG2 462 aa7.37□□□□□ -1.23
VPS13C-205ENST00000558088 SMPD1P17405 629 aa7.36□□□□□ -1.23
VPS13C-205ENST00000558088 SSTR3P32745 418 aaPredicted RBP7.36□□□□□ -1.23
VPS13C-205ENST00000558088 RC3H1Q5TC82 1133 aaKnown RBP7.36□□□□□ -1.23
VPS13C-205ENST00000558088 SYMPKQ92797 1274 aaKnown RBP7.36□□□□□ -1.23
VPS13C-205ENST00000558088 MS4A1P11836 297 aa7.35□□□□□ -1.23
VPS13C-205ENST00000558088 GMPR2Q9P2T1 348 aaKnown RBP7.35□□□□□ -1.23
VPS13C-205ENST00000558088 J3QL48 77 aa7.34□□□□□ -1.23
VPS13C-205ENST00000558088 BARGINQ6ZT62 677 aa7.34□□□□□ -1.23
VPS13C-205ENST00000558088 SENP2Q9HC62 589 aa7.34□□□□□ -1.23
VPS13C-205ENST00000558088 DACH1Q9UI36 760 aa7.34□□□□□ -1.23
VPS13C-205ENST00000558088 ALDH1A1P00352 501 aa7.33□□□□□ -1.24
VPS13C-205ENST00000558088 TREML4Q6UXN2 200 aa7.33□□□□□ -1.24
VPS13C-205ENST00000558088 EHBP1Q8NDI1 1231 aa7.33□□□□□ -1.24
VPS13C-205ENST00000558088 SPDYE5A6NIY4 337 aa7.32□□□□□ -1.24
VPS13C-205ENST00000558088 CCNYL3P0C7X3 344 aa7.32□□□□□ -1.24
VPS13C-205ENST00000558088 DIXDC1Q155Q3 683 aa7.32□□□□□ -1.24
VPS13C-205ENST00000558088 AMHR2Q16671 573 aa7.32□□□□□ -1.24
VPS13C-205ENST00000558088 SPIRE2Q8WWL2 714 aa7.32□□□□□ -1.24
VPS13C-205ENST00000558088 ATP13A2Q9NQ11 1180 aa7.32□□□□□ -1.24
VPS13C-205ENST00000558088 ZMYND10O75800 440 aa7.31□□□□□ -1.24
VPS13C-205ENST00000558088 SKOR1P84550 965 aa7.31□□□□□ -1.24
VPS13C-205ENST00000558088 PTPRNQ16849 979 aa7.31□□□□□ -1.24
VPS13C-205ENST00000558088 GIGYF2Q6Y7W6 1299 aaKnown RBP7.31□□□□□ -1.24
VPS13C-205ENST00000558088 WASF2Q9Y6W5 498 aa7.31□□□□□ -1.24
VPS13C-205ENST00000558088 MTMR2Q13614 643 aa7.3□□□□□ -1.24
VPS13C-205ENST00000558088 ZC3H15Q8WU90 426 aaKnown RBP7.3□□□□□ -1.24
VPS13C-205ENST00000558088 HPS1Q92902 700 aa7.3□□□□□ -1.24
VPS13C-205ENST00000558088 KIFC2Q96AC6 838 aa7.3□□□□□ -1.24
VPS13C-205ENST00000558088 PCDHGC3Q9UN70 934 aa7.3□□□□□ -1.24
VPS13C-205ENST00000558088 MOXD2PA6NHM9 499 aa7.29□□□□□ -1.24
VPS13C-205ENST00000558088 WFS1O76024 890 aa7.29□□□□□ -1.24
VPS13C-205ENST00000558088 NDUFV2P19404 249 aa7.29□□□□□ -1.24
VPS13C-205ENST00000558088 PRR7Q8TB68 274 aa7.29□□□□□ -1.24
VPS13C-205ENST00000558088 BEGAINQ9BUH8 593 aa7.29□□□□□ -1.24
VPS13C-205ENST00000558088 PTCRAQ6ISU1 281 aaPredicted RBP7.28□□□□□ -1.24
VPS13C-205ENST00000558088 TRIM47Q96LD4 638 aa7.28□□□□□ -1.24
VPS13C-205ENST00000558088 DESI1Q6ICB0 168 aa7.27□□□□□ -1.25
VPS13C-205ENST00000558088 UNC93B1Q9H1C4 597 aa7.27□□□□□ -1.25
VPS13C-205ENST00000558088 EVA1BQ9NVM1 165 aa7.27□□□□□ -1.25
VPS13C-205ENST00000558088 GJA5P36382 358 aa7.26□□□□□ -1.25
VPS13C-205ENST00000558088 SH3BP2P78314 561 aa7.26□□□□□ -1.25
VPS13C-205ENST00000558088 KCNH2Q12809 1159 aa7.26□□□□□ -1.25
VPS13C-205ENST00000558088 PLEKHG3A1L390 1219 aa7.25□□□□□ -1.25
VPS13C-205ENST00000558088 LINC01559Q495D7 138 aa7.25□□□□□ -1.25
VPS13C-205ENST00000558088 TBC1D2Q9BYX2 928 aa7.25□□□□□ -1.25
VPS13C-205ENST00000558088 CAPN5O15484 640 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-205ENST00000558088 SIAH2O43255 324 aa7.24□□□□□ -1.25
VPS13C-205ENST00000558088 SNRPBP14678 240 aaKnown RBP7.24□□□□□ -1.25
VPS13C-205ENST00000558088 CTHP32929 405 aa7.24□□□□□ -1.25
VPS13C-205ENST00000558088 PARP9Q8IXQ6 854 aa7.24□□□□□ -1.25
VPS13C-205ENST00000558088 AK7Q96M32 723 aa7.24□□□□□ -1.25
VPS13C-205ENST00000558088 VARSP26640 1264 aaKnown RBP7.23□□□□□ -1.25
VPS13C-205ENST00000558088 RSBN1LQ6PCB5 846 aaPredicted RBP7.23□□□□□ -1.25
VPS13C-205ENST00000558088 ZNF511Q8NB15 262 aa7.23□□□□□ -1.25
VPS13C-205ENST00000558088 BAP1Q92560 729 aa7.23□□□□□ -1.25
VPS13C-205ENST00000558088 ZBTB3Q9H5J0 574 aa7.23□□□□□ -1.25
VPS13C-205ENST00000558088 TRIM66O15016 1216 aa7.22□□□□□ -1.25
VPS13C-205ENST00000558088 LCE2AQ5TA79 106 aaPredicted RBP7.22□□□□□ -1.25
VPS13C-205ENST00000558088 TERTO14746 1132 aaKnown RBP7.21□□□□□ -1.26
VPS13C-205ENST00000558088 SPTLC1O15269 473 aa7.21□□□□□ -1.26
VPS13C-205ENST00000558088 INSM1Q01101 510 aaPredicted RBP7.21□□□□□ -1.26
VPS13C-205ENST00000558088 NFX1Q12986 1120 aaKnown RBP7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms