RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 NCKAP5LQ9HCH0 1330 aa22.76■■□□□ 1.23
LDLR-206ENST00000557958 ADAMTS13Q76LX8 1427 aa22.75■■□□□ 1.23
LDLR-206ENST00000557958 ZBED9Q6R2W3 1325 aa22.74■■□□□ 1.23
LDLR-206ENST00000557958 MINK1Q8N4C8 1332 aaPredicted RBP22.74■■□□□ 1.23
LDLR-206ENST00000557958 ARHGEF28Q8N1W1 1705 aaKnown RBP22.74■■□□□ 1.23
LDLR-206ENST00000557958 LRPPRCP42704 1394 aaKnown RBP22.74■■□□□ 1.23
LDLR-206ENST00000557958 NPC1L1Q9UHC9 1359 aa22.74■■□□□ 1.23
LDLR-206ENST00000557958 HSPA2P54652 639 aa22.73■■□□□ 1.23
LDLR-206ENST00000557958 CC2D1BQ5T0F9 858 aaKnown RBP22.73■■□□□ 1.23
LDLR-206ENST00000557958 PUS7Q96PZ0 661 aaKnown RBP22.73■■□□□ 1.23
LDLR-206ENST00000557958 TBX22Q9Y458 520 aa22.73■■□□□ 1.23
LDLR-206ENST00000557958 PNISRQ8TF01 805 aaKnown RBP22.72■■□□□ 1.23
LDLR-206ENST00000557958 EVC2Q86UK5 1308 aa22.71■■□□□ 1.23
LDLR-206ENST00000557958 SETD1AO15047 1707 aaKnown RBP22.7■■□□□ 1.22
LDLR-206ENST00000557958 ABCC11Q96J66 1382 aa22.69■■□□□ 1.22
LDLR-206ENST00000557958 AMOTL2Q9Y2J4 779 aa22.69■■□□□ 1.22
LDLR-206ENST00000557958 PLEKHH1Q9ULM0 1364 aa22.68■■□□□ 1.22
LDLR-206ENST00000557958 AMER1Q5JTC6 1135 aaPredicted RBP22.67■■□□□ 1.22
LDLR-206ENST00000557958 SRPK2P78362 688 aaKnown RBP22.66■■□□□ 1.22
LDLR-206ENST00000557958 MED14O60244 1454 aa22.65■■□□□ 1.22
LDLR-206ENST00000557958 CABP2Q9NPB3 220 aa22.65■■□□□ 1.22
LDLR-206ENST00000557958 NEFLP07196 543 aa22.64■■□□□ 1.22
LDLR-206ENST00000557958 NPHP4O75161 1426 aaPredicted RBP22.64■■□□□ 1.21
LDLR-206ENST00000557958 PTPRUQ92729 1446 aa22.64■■□□□ 1.21
LDLR-206ENST00000557958 INSRP06213 1382 aa22.62■■□□□ 1.21
LDLR-206ENST00000557958 ROBO2Q9HCK4 1378 aa22.62■■□□□ 1.21
LDLR-206ENST00000557958 NINLQ9Y2I6 1382 aa22.62■■□□□ 1.21
LDLR-206ENST00000557958 DLC1Q96QB1 1528 aa22.61■■□□□ 1.21
LDLR-206ENST00000557958 TULP4Q9NRJ4 1543 aa22.61■■□□□ 1.21
LDLR-206ENST00000557958 CDK19Q9BWU1 502 aa22.6■■□□□ 1.21
LDLR-206ENST00000557958 KCNA6P17658 529 aa22.6■■□□□ 1.21
LDLR-206ENST00000557958 SIRT1Q96EB6 747 aa22.59■■□□□ 1.21
LDLR-206ENST00000557958 DIP2AQ14689 1571 aa22.58■■□□□ 1.21
LDLR-206ENST00000557958 ATAD2Q6PL18 1390 aa22.57■■□□□ 1.2
LDLR-206ENST00000557958 PPP2R1AP30153 589 aa22.57■■□□□ 1.2
LDLR-206ENST00000557958 SLC12A5Q9H2X9 1139 aa22.57■■□□□ 1.2
LDLR-206ENST00000557958 TECPR2O15040 1411 aa22.57■■□□□ 1.2
LDLR-206ENST00000557958 RBM33Q96EV2 1170 aaKnown RBP22.56■■□□□ 1.2
LDLR-206ENST00000557958 SUPT16HQ9Y5B9 1047 aaKnown RBP22.56■■□□□ 1.2
LDLR-206ENST00000557958 FAM135BQ49AJ0 1406 aa22.56■■□□□ 1.2
LDLR-206ENST00000557958 CARD14Q9BXL6 1004 aa22.55■■□□□ 1.2
LDLR-206ENST00000557958 ANKRD36BQ8N2N9 1353 aa22.55■■□□□ 1.2
LDLR-206ENST00000557958 LMTK3Q96Q04 1460 aa22.55■■□□□ 1.2
LDLR-206ENST00000557958 USP32Q8NFA0 1604 aa22.54■■□□□ 1.2
LDLR-206ENST00000557958 NSD3Q9BZ95 1437 aa22.54■■□□□ 1.2
LDLR-206ENST00000557958 CPS1P31327 1500 aa22.53■■□□□ 1.2
LDLR-206ENST00000557958 PIK3R4Q99570 1358 aa22.53■■□□□ 1.2
LDLR-206ENST00000557958 WASLO00401 505 aaPredicted RBP22.53■■□□□ 1.2
LDLR-206ENST00000557958 KNDC1Q76NI1 1749 aa22.52■■□□□ 1.2
LDLR-206ENST00000557958 NUTM2FA1L443 756 aa22.52■■□□□ 1.2
LDLR-206ENST00000557958 CGNL1Q0VF96 1302 aa22.52■■□□□ 1.19
LDLR-206ENST00000557958 NSD2O96028 1365 aa22.5■■□□□ 1.19
LDLR-206ENST00000557958 WDR43Q15061 677 aaKnown RBP eCLIP22.49■■□□□ 1.19
LDLR-206ENST00000557958 BLMP54132 1417 aaPredicted RBP22.49■■□□□ 1.19
LDLR-206ENST00000557958 SMG6Q86US8 1419 aaKnown RBP22.49■■□□□ 1.19
LDLR-206ENST00000557958 FKBP8Q14318 412 aa22.48■■□□□ 1.19
LDLR-206ENST00000557958 C14orf37Q86TY3 774 aa22.48■■□□□ 1.19
LDLR-206ENST00000557958 TERF2IPQ9NYB0 399 aa22.47■■□□□ 1.19
LDLR-206ENST00000557958 CABP1Q9NZU7 370 aa22.47■■□□□ 1.19
LDLR-206ENST00000557958 PTCH1Q13635 1447 aa22.47■■□□□ 1.19
LDLR-206ENST00000557958 MORC1Q86VD1 984 aa22.45■■□□□ 1.19
LDLR-206ENST00000557958 NUDT16Q96DE0 195 aaKnown RBP22.45■■□□□ 1.19
LDLR-206ENST00000557958 PROSER2Q86WR7 435 aaPredicted RBP22.45■■□□□ 1.18
LDLR-206ENST00000557958 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.44■■□□□ 1.18
LDLR-206ENST00000557958 NUDCQ9Y266 331 aa22.44■■□□□ 1.18
LDLR-206ENST00000557958 XRN1Q8IZH2 1706 aaKnown RBP22.44■■□□□ 1.18
LDLR-206ENST00000557958 CHD2O14647 1828 aaKnown RBP22.43■■□□□ 1.18
LDLR-206ENST00000557958 PDE3BQ13370 1112 aa22.43■■□□□ 1.18
LDLR-206ENST00000557958 HDGFL2Q7Z4V5 671 aaPredicted RBP22.41■■□□□ 1.18
LDLR-206ENST00000557958 A0A1W2PP64 1363 aa22.41■■□□□ 1.18
LDLR-206ENST00000557958 MYT1Q01538 1121 aa22.4■■□□□ 1.18
LDLR-206ENST00000557958 CCDC61Q9Y6R9 512 aa22.39■■□□□ 1.18
LDLR-206ENST00000557958 POLR3AO14802 1390 aaPredicted RBP22.39■■□□□ 1.17
LDLR-206ENST00000557958 ADAMTS8Q9UP79 889 aa22.39■■□□□ 1.17
LDLR-206ENST00000557958 PRR36Q9H6K5 1346 aa22.38■■□□□ 1.17
LDLR-206ENST00000557958 ERICH6BQ5W0A0 696 aa22.37■■□□□ 1.17
LDLR-206ENST00000557958 PPIP5K1Q6PFW1 1433 aa22.37■■□□□ 1.17
LDLR-206ENST00000557958 STRCQ7RTU9 1775 aa22.37■■□□□ 1.17
LDLR-206ENST00000557958 ATP7BP35670 1465 aa22.37■■□□□ 1.17
LDLR-206ENST00000557958 CFAP53Q96M91 514 aa22.34■■□□□ 1.17
LDLR-206ENST00000557958 PMFBP1Q8TBY8 1022 aa22.34■■□□□ 1.17
LDLR-206ENST00000557958 CD163L1Q9NR16 1453 aa22.33■■□□□ 1.17
LDLR-206ENST00000557958 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.32■■□□□ 1.16
LDLR-206ENST00000557958 ADGRB2O60241 1585 aa22.32■■□□□ 1.16
LDLR-206ENST00000557958 ZNF335Q9H4Z2 1342 aaPredicted RBP22.31■■□□□ 1.16
LDLR-206ENST00000557958 TNNT2P45379 298 aaPredicted RBP22.3■■□□□ 1.16
LDLR-206ENST00000557958 NGEFQ8N5V2 710 aa22.3■■□□□ 1.16
LDLR-206ENST00000557958 DMRT2Q9Y5R5 561 aa22.3■■□□□ 1.16
LDLR-206ENST00000557958 NWD1Q149M9 1564 aa22.29■■□□□ 1.16
LDLR-206ENST00000557958 NGDNQ8NEJ9 315 aaKnown RBP22.28■■□□□ 1.16
LDLR-206ENST00000557958 TMEM94Q12767 1356 aa22.28■■□□□ 1.16
LDLR-206ENST00000557958 ACEP12821 1306 aa22.28■■□□□ 1.16
LDLR-206ENST00000557958 GGNBP2Q9H3C7 697 aa22.28■■□□□ 1.16
LDLR-206ENST00000557958 SALL2Q9Y467 1007 aaPredicted RBP22.28■■□□□ 1.16
LDLR-206ENST00000557958 ANKRD26Q9UPS8 1709 aa22.28■■□□□ 1.16
LDLR-206ENST00000557958 ADGRL3Q9HAR2 1447 aa22.27■■□□□ 1.16
LDLR-206ENST00000557958 SENP3-EIF4A1A0A087X0R7 540 aa22.27■■□□□ 1.16
LDLR-206ENST00000557958 NALCNQ8IZF0 1738 aa22.27■■□□□ 1.15
LDLR-206ENST00000557958 NKTRP30414 1462 aaKnown RBP22.26■■□□□ 1.15
LDLR-206ENST00000557958 MTHFSP49914 203 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms