RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 ATP7AQ04656 1500 aa15.11■□□□□ 0.01
VIPAS39-211ENST00000557658 NEUROD2Q15784 382 aa15.1■□□□□ 0.01
VIPAS39-211ENST00000557658 SLKQ9H2G2 1235 aaPredicted RBP15.1■□□□□ 0.01
VIPAS39-211ENST00000557658 NSD3Q9BZ95 1437 aa15.1■□□□□ 0.01
VIPAS39-211ENST00000557658 IQSEC2Q5JU85 1478 aa15.1■□□□□ 0.01
VIPAS39-211ENST00000557658 INO80Q9ULG1 1556 aaPredicted RBP15.1■□□□□ 0.01
VIPAS39-211ENST00000557658 KIF3BO15066 747 aa15.09■□□□□ 0.01
VIPAS39-211ENST00000557658 TCP11L2Q8N4U5 519 aa15.09■□□□□ 0.01
VIPAS39-211ENST00000557658 POGKQ9P215 609 aa15.09■□□□□ 0.01
VIPAS39-211ENST00000557658 UGGT1Q9NYU2 1555 aa15.09■□□□□ 0.01
VIPAS39-211ENST00000557658 TBC1D32Q96NH3 1257 aa15.09■□□□□ 0.01
VIPAS39-211ENST00000557658 PHF23Q9BUL5 403 aaPredicted RBP15.09■□□□□ 0.01
VIPAS39-211ENST00000557658 RWDD1Q9H446 243 aaPredicted RBP15.09■□□□□ 0.01
VIPAS39-211ENST00000557658 RRP7AQ9Y3A4 280 aaKnown RBP15.09■□□□□ 0.01
VIPAS39-211ENST00000557658 PCDHB15Q9Y5E8 787 aa15.09■□□□□ 0.01
VIPAS39-211ENST00000557658 PDZRN3Q9UPQ7 1066 aa15.08■□□□□ 0
VIPAS39-211ENST00000557658 NRXN1Q9ULB1 1477 aa15.07■□□□□ 0
VIPAS39-211ENST00000557658 L1TD1Q5T7N2 865 aaKnown RBP15.07■□□□□ 0
VIPAS39-211ENST00000557658 ANTXR1Q9H6X2 564 aa15.07■□□□□ 0
VIPAS39-211ENST00000557658 RLBP1P12271 317 aa15.07■□□□□ 0
VIPAS39-211ENST00000557658 CCDC27Q2M243 656 aa15.07■□□□□ 0
VIPAS39-211ENST00000557658 SETBP1Q9Y6X0 1596 aa15.07■□□□□ 0
VIPAS39-211ENST00000557658 MROH2AA6NES4 1674 aa15.06■□□□□ 0
VIPAS39-211ENST00000557658 TNNT2P45379 298 aaPredicted RBP15.06■□□□□ 0
VIPAS39-211ENST00000557658 CFAP53Q96M91 514 aa15.06■□□□□ 0
VIPAS39-211ENST00000557658 MROH1Q8NDA8 1641 aa15.05■□□□□ 0
VIPAS39-211ENST00000557658 MYH16Q9H6N6 1097 aa15.05■□□□□ 0
VIPAS39-211ENST00000557658 EFCAB6Q5THR3 1501 aa15.05■□□□□ 0
VIPAS39-211ENST00000557658 TBC1D2Q9BYX2 928 aa15.05■□□□□ -0
VIPAS39-211ENST00000557658 USP32Q8NFA0 1604 aa15.05■□□□□ -0
VIPAS39-211ENST00000557658 NCBP3Q53F19 620 aaKnown RBP15.04■□□□□ -0
VIPAS39-211ENST00000557658 TNNQ9UQP3 1299 aa15.04■□□□□ -0
VIPAS39-211ENST00000557658 ZC3H13Q5T200 1668 aaKnown RBP15.04■□□□□ -0
VIPAS39-211ENST00000557658 BCL2L13Q9BXK5 485 aa15.04■□□□□ -0
VIPAS39-211ENST00000557658 ZNF518AQ6AHZ1 1483 aa15.04■□□□□ -0
VIPAS39-211ENST00000557658 QRICH2Q9H0J4 1663 aa15.03■□□□□ -0
VIPAS39-211ENST00000557658 RSPH6AQ9H0K4 717 aa15.03■□□□□ -0
VIPAS39-211ENST00000557658 SLC12A5Q9H2X9 1139 aa15.03■□□□□ -0
VIPAS39-211ENST00000557658 ABCA9Q8IUA7 1624 aa15.02■□□□□ -0
VIPAS39-211ENST00000557658 FANCAO15360 1455 aa15.02■□□□□ -0
VIPAS39-211ENST00000557658 MVPQ14764 893 aaKnown RBP15.02■□□□□ -0
VIPAS39-211ENST00000557658 NOS1P29475 1434 aa15.02□□□□□ -0.01
VIPAS39-211ENST00000557658 MTHFSP49914 203 aa15.02□□□□□ -0.01
VIPAS39-211ENST00000557658 ZKSCAN2Q63HK3 967 aa15.01□□□□□ -0.01
VIPAS39-211ENST00000557658 TRAK1Q9UPV9 953 aa15.01□□□□□ -0.01
VIPAS39-211ENST00000557658 ADGRB3O60242 1522 aa15.01□□□□□ -0.01
VIPAS39-211ENST00000557658 PPRC1Q5VV67 1664 aaKnown RBP15□□□□□ -0.01
VIPAS39-211ENST00000557658 FTSJ3Q8IY81 847 aaKnown RBP15□□□□□ -0.01
VIPAS39-211ENST00000557658 ADGRL1O94910 1474 aa14.99□□□□□ -0.01
VIPAS39-211ENST00000557658 EIF5BO60841 1220 aaKnown RBP14.99□□□□□ -0.01
VIPAS39-211ENST00000557658 CT47B1P0C2W7 299 aaPredicted RBP14.99□□□□□ -0.01
VIPAS39-211ENST00000557658 DZIP1LQ8IYY4 767 aaKnown RBP14.99□□□□□ -0.01
VIPAS39-211ENST00000557658 LMTK2Q8IWU2 1503 aa14.99□□□□□ -0.01
VIPAS39-211ENST00000557658 CHGAP10645 457 aaKnown RBP14.98□□□□□ -0.01
VIPAS39-211ENST00000557658 C14orf93Q9H972 538 aaKnown RBP14.98□□□□□ -0.01
VIPAS39-211ENST00000557658 PPLO60437 1756 aa14.98□□□□□ -0.01
VIPAS39-211ENST00000557658 NSD2O96028 1365 aa14.98□□□□□ -0.01
VIPAS39-211ENST00000557658 ADGRB2O60241 1585 aa14.98□□□□□ -0.01
VIPAS39-211ENST00000557658 U2AF1L5P0DN76 240 aaPredicted RBP14.97□□□□□ -0.01
VIPAS39-211ENST00000557658 U2AF1Q01081 240 aaKnown RBP eCLIP14.97□□□□□ -0.01
VIPAS39-211ENST00000557658 C22orf23Q9BZE7 217 aa14.97□□□□□ -0.01
VIPAS39-211ENST00000557658 MCM4P33991 863 aa14.97□□□□□ -0.01
VIPAS39-211ENST00000557658 CHMP5Q9NZZ3 219 aa14.96□□□□□ -0.01
VIPAS39-211ENST00000557658 ADGRB1O14514 1584 aa14.96□□□□□ -0.01
VIPAS39-211ENST00000557658 GOLGA6L3A6NEY3 463 aa14.96□□□□□ -0.01
VIPAS39-211ENST00000557658 HDAC1Q13547 482 aaPredicted RBP14.95□□□□□ -0.02
VIPAS39-211ENST00000557658 PUS7Q96PZ0 661 aaKnown RBP14.95□□□□□ -0.02
VIPAS39-211ENST00000557658 SMC4Q9NTJ3 1288 aa14.95□□□□□ -0.02
VIPAS39-211ENST00000557658 MFAP1P55081 439 aaKnown RBP14.94□□□□□ -0.02
VIPAS39-211ENST00000557658 SPRYD3Q8NCJ5 442 aa14.94□□□□□ -0.02
VIPAS39-211ENST00000557658 DDX19BQ9UMR2 479 aa14.94□□□□□ -0.02
VIPAS39-211ENST00000557658 ANKRD36BQ8N2N9 1353 aa14.94□□□□□ -0.02
VIPAS39-211ENST00000557658 EVC2Q86UK5 1308 aa14.93□□□□□ -0.02
VIPAS39-211ENST00000557658 KIDINS220Q9ULH0 1771 aa14.93□□□□□ -0.02
VIPAS39-211ENST00000557658 FSD2A1L4K1 749 aa14.93□□□□□ -0.02
VIPAS39-211ENST00000557658 TMEM132EQ6IEE7 984 aa14.93□□□□□ -0.02
VIPAS39-211ENST00000557658 RPGRIP1LQ68CZ1 1315 aa14.93□□□□□ -0.02
VIPAS39-211ENST00000557658 TSR2Q969E8 191 aaKnown RBP14.92□□□□□ -0.02
VIPAS39-211ENST00000557658 RRAGDQ9NQL2 400 aaPredicted RBP14.92□□□□□ -0.02
VIPAS39-211ENST00000557658 XRCC6P12956 609 aaKnown RBP eCLIP14.92□□□□□ -0.02
VIPAS39-211ENST00000557658 EXOSC9Q06265 439 aaKnown RBP14.92□□□□□ -0.02
VIPAS39-211ENST00000557658 CFAP65Q6ZU64 1925 aaKnown RBP14.92□□□□□ -0.02
VIPAS39-211ENST00000557658 TRIM27P14373 513 aa14.91□□□□□ -0.02
VIPAS39-211ENST00000557658 ITPRIPQ8IWB1 547 aa14.91□□□□□ -0.02
VIPAS39-211ENST00000557658 HSCBQ8IWL3 235 aa14.91□□□□□ -0.02
VIPAS39-211ENST00000557658 ATF7IPQ6VMQ6 1270 aa14.91□□□□□ -0.02
VIPAS39-211ENST00000557658 SMC5Q8IY18 1101 aa14.9□□□□□ -0.02
VIPAS39-211ENST00000557658 TRAK2O60296 914 aa14.9□□□□□ -0.02
VIPAS39-211ENST00000557658 GLI2P10070 1586 aa14.9□□□□□ -0.02
VIPAS39-211ENST00000557658 SSH1Q8WYL5 1049 aa14.9□□□□□ -0.02
VIPAS39-211ENST00000557658 TULP4Q9NRJ4 1543 aa14.89□□□□□ -0.03
VIPAS39-211ENST00000557658 NPATQ14207 1427 aa14.89□□□□□ -0.03
VIPAS39-211ENST00000557658 IL16Q14005 1332 aa14.89□□□□□ -0.03
VIPAS39-211ENST00000557658 TMPOP42166 694 aaKnown RBP14.89□□□□□ -0.03
VIPAS39-211ENST00000557658 ARXQ96QS3 562 aa14.89□□□□□ -0.03
VIPAS39-211ENST00000557658 GZF1Q9H116 711 aaPredicted RBP14.89□□□□□ -0.03
VIPAS39-211ENST00000557658 ARHGEF28Q8N1W1 1705 aaKnown RBP14.89□□□□□ -0.03
VIPAS39-211ENST00000557658 ABCC11Q96J66 1382 aa14.89□□□□□ -0.03
VIPAS39-211ENST00000557658 DDX11L8A8MPP1 907 aa14.88□□□□□ -0.03
VIPAS39-211ENST00000557658 U2SURPO15042 1029 aaKnown RBP14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms