RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ANKRD36BQ8N2N9 1353 aa16.95■□□□□ 0.3
SHMT2-229ENST00000557348 ERICH6BQ5W0A0 696 aa16.94■□□□□ 0.3
SHMT2-229ENST00000557348 SETD1AO15047 1707 aaKnown RBP16.94■□□□□ 0.3
SHMT2-229ENST00000557348 C3P01024 1663 aa16.94■□□□□ 0.3
SHMT2-229ENST00000557348 TECPR2O15040 1411 aa16.93■□□□□ 0.3
SHMT2-229ENST00000557348 FAM135BQ49AJ0 1406 aa16.93■□□□□ 0.3
SHMT2-229ENST00000557348 ADAMTSL3P82987 1691 aa16.93■□□□□ 0.3
SHMT2-229ENST00000557348 PLEKHG1Q9ULL1 1385 aa16.93■□□□□ 0.3
SHMT2-229ENST00000557348 PRAM1Q96QH2 718 aa16.92■□□□□ 0.3
SHMT2-229ENST00000557348 STK26Q9P289 416 aa16.92■□□□□ 0.3
SHMT2-229ENST00000557348 NRXN3Q9Y4C0 1643 aa16.92■□□□□ 0.3
SHMT2-229ENST00000557348 SLIT1O75093 1534 aa16.92■□□□□ 0.3
SHMT2-229ENST00000557348 EID1Q9Y6B2 187 aa16.91■□□□□ 0.3
SHMT2-229ENST00000557348 CGNL1Q0VF96 1302 aa16.91■□□□□ 0.3
SHMT2-229ENST00000557348 KNDC1Q76NI1 1749 aa16.91■□□□□ 0.3
SHMT2-229ENST00000557348 PPP2R1AP30153 589 aa16.91■□□□□ 0.3
SHMT2-229ENST00000557348 ARHGAP23Q9P227 1491 aa16.9■□□□□ 0.3
SHMT2-229ENST00000557348 NSD3Q9BZ95 1437 aa16.9■□□□□ 0.3
SHMT2-229ENST00000557348 CPS1P31327 1500 aa16.88■□□□□ 0.29
SHMT2-229ENST00000557348 SRPK2P78362 688 aaKnown RBP16.88■□□□□ 0.29
SHMT2-229ENST00000557348 THEMISQ8N1K5 641 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-229ENST00000557348 TERF2IPQ9NYB0 399 aa16.88■□□□□ 0.29
SHMT2-229ENST00000557348 BLMP54132 1417 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-229ENST00000557348 FANCIQ9NVI1 1328 aa16.88■□□□□ 0.29
SHMT2-229ENST00000557348 CARD14Q9BXL6 1004 aa16.88■□□□□ 0.29
SHMT2-229ENST00000557348 DIP2AQ14689 1571 aa16.87■□□□□ 0.29
SHMT2-229ENST00000557348 RIMS1Q86UR5 1692 aaKnown RBP16.87■□□□□ 0.29
SHMT2-229ENST00000557348 SMG6Q86US8 1419 aaKnown RBP16.86■□□□□ 0.29
SHMT2-229ENST00000557348 PDE3BQ13370 1112 aa16.86■□□□□ 0.29
SHMT2-229ENST00000557348 SLC12A5Q9H2X9 1139 aa16.86■□□□□ 0.29
SHMT2-229ENST00000557348 WDR43Q15061 677 aaKnown RBP eCLIP16.85■□□□□ 0.29
SHMT2-229ENST00000557348 MINK1Q8N4C8 1332 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-229ENST00000557348 CABP2Q9NPB3 220 aa16.85■□□□□ 0.29
SHMT2-229ENST00000557348 HDGFL2Q7Z4V5 671 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-229ENST00000557348 BCANQ96GW7 911 aa16.84■□□□□ 0.29
SHMT2-229ENST00000557348 RBM19Q9Y4C8 960 aaKnown RBP16.84■□□□□ 0.29
SHMT2-229ENST00000557348 ADAMTS13Q76LX8 1427 aa16.84■□□□□ 0.29
SHMT2-229ENST00000557348 METP08581 1390 aa16.83■□□□□ 0.29
SHMT2-229ENST00000557348 MED14O60244 1454 aa16.83■□□□□ 0.28
SHMT2-229ENST00000557348 ATP7BP35670 1465 aa16.83■□□□□ 0.28
SHMT2-229ENST00000557348 SAFB2Q14151 953 aaKnown RBP eCLIP16.83■□□□□ 0.28
SHMT2-229ENST00000557348 TXNDC2Q86VQ3 553 aa16.83■□□□□ 0.28
SHMT2-229ENST00000557348 POLR3AO14802 1390 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-229ENST00000557348 CEBPAP49715 358 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-229ENST00000557348 MORC1Q86VD1 984 aa16.82■□□□□ 0.28
SHMT2-229ENST00000557348 NGEFQ8N5V2 710 aa16.82■□□□□ 0.28
SHMT2-229ENST00000557348 CDK19Q9BWU1 502 aa16.82■□□□□ 0.28
SHMT2-229ENST00000557348 FKBP8Q14318 412 aa16.81■□□□□ 0.28
SHMT2-229ENST00000557348 NUDCQ9Y266 331 aa16.81■□□□□ 0.28
SHMT2-229ENST00000557348 A0A1W2PP64 1363 aa16.81■□□□□ 0.28
SHMT2-229ENST00000557348 CEP170BQ9Y4F5 1589 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-229ENST00000557348 TBX22Q9Y458 520 aa16.8■□□□□ 0.28
SHMT2-229ENST00000557348 ADGRB2O60241 1585 aa16.79■□□□□ 0.28
SHMT2-229ENST00000557348 PIK3R4Q99570 1358 aa16.78■□□□□ 0.28
SHMT2-229ENST00000557348 WASLO00401 505 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-229ENST00000557348 LTKP29376 864 aa16.78■□□□□ 0.28
SHMT2-229ENST00000557348 CFAP53Q96M91 514 aa16.78■□□□□ 0.28
SHMT2-229ENST00000557348 PTCH1Q13635 1447 aa16.77■□□□□ 0.28
SHMT2-229ENST00000557348 ZNF142P52746 1687 aaPredicted RBP16.77■□□□□ 0.27
SHMT2-229ENST00000557348 PLEKHH1Q9ULM0 1364 aa16.76■□□□□ 0.27
SHMT2-229ENST00000557348 WAPLQ7Z5K2 1190 aa16.75■□□□□ 0.27
SHMT2-229ENST00000557348 SENP3Q9H4L4 574 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-229ENST00000557348 CD163L1Q9NR16 1453 aa16.75■□□□□ 0.27
SHMT2-229ENST00000557348 ADAMTS8Q9UP79 889 aa16.74■□□□□ 0.27
SHMT2-229ENST00000557348 ANKRD26Q9UPS8 1709 aa16.73■□□□□ 0.27
SHMT2-229ENST00000557348 ROBO2Q9HCK4 1378 aa16.72■□□□□ 0.27
SHMT2-229ENST00000557348 EDC4Q6P2E9 1401 aaKnown RBP16.72■□□□□ 0.27
SHMT2-229ENST00000557348 PLPPR3Q6T4P5 718 aa16.72■□□□□ 0.27
SHMT2-229ENST00000557348 CABP1Q9NZU7 370 aa16.72■□□□□ 0.27
SHMT2-229ENST00000557348 CCDC61Q9Y6R9 512 aa16.72■□□□□ 0.27
SHMT2-229ENST00000557348 CPSF1Q10570 1443 aaKnown RBP16.71■□□□□ 0.27
SHMT2-229ENST00000557348 ZNF692Q9BU19 519 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-229ENST00000557348 PPIP5K1Q6PFW1 1433 aa16.71■□□□□ 0.27
SHMT2-229ENST00000557348 CDC42BPGQ6DT37 1551 aa16.71■□□□□ 0.26
SHMT2-229ENST00000557348 ANKLE2Q86XL3 938 aa16.69■□□□□ 0.26
SHMT2-229ENST00000557348 NCBP3Q53F19 620 aaKnown RBP16.69■□□□□ 0.26
SHMT2-229ENST00000557348 NUDT16Q96DE0 195 aaKnown RBP16.69■□□□□ 0.26
SHMT2-229ENST00000557348 SETD1BQ9UPS6 1966 aaKnown RBP16.68■□□□□ 0.26
SHMT2-229ENST00000557348 AMOTL2Q9Y2J4 779 aa16.68■□□□□ 0.26
SHMT2-229ENST00000557348 XRN1Q8IZH2 1706 aaKnown RBP16.68■□□□□ 0.26
SHMT2-229ENST00000557348 PTPRUQ92729 1446 aa16.67■□□□□ 0.26
SHMT2-229ENST00000557348 KIF20BQ96Q89 1820 aa16.67■□□□□ 0.26
SHMT2-229ENST00000557348 RNF123Q5XPI4 1314 aa16.67■□□□□ 0.26
SHMT2-229ENST00000557348 FYB1O15117 783 aa16.67■□□□□ 0.26
SHMT2-229ENST00000557348 MTHFSP49914 203 aa16.66■□□□□ 0.26
SHMT2-229ENST00000557348 SLC26A8Q96RN1 970 aa16.66■□□□□ 0.26
SHMT2-229ENST00000557348 SHPRHQ149N8 1683 aa16.64■□□□□ 0.25
SHMT2-229ENST00000557348 LMTK3Q96Q04 1460 aa16.63■□□□□ 0.25
SHMT2-229ENST00000557348 GGNBP2Q9H3C7 697 aa16.63■□□□□ 0.25
SHMT2-229ENST00000557348 ANKARQ7Z5J8 1434 aa16.63■□□□□ 0.25
SHMT2-229ENST00000557348 MON2Q7Z3U7 1717 aa16.63■□□□□ 0.25
SHMT2-229ENST00000557348 TOPAZ1Q8N9V7 1692 aa16.63■□□□□ 0.25
SHMT2-229ENST00000557348 ITSN1Q15811 1721 aa16.63■□□□□ 0.25
SHMT2-229ENST00000557348 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-229ENST00000557348 PLEKHG3A1L390 1219 aa16.62■□□□□ 0.25
SHMT2-229ENST00000557348 TNNT2P45379 298 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-229ENST00000557348 ERICH6Q7L0X2 663 aa16.62■□□□□ 0.25
SHMT2-229ENST00000557348 PNNQ9H307 717 aaKnown RBP16.62■□□□□ 0.25
SHMT2-229ENST00000557348 ZNF521Q96K83 1311 aa16.62■□□□□ 0.25
SHMT2-229ENST00000557348 GOLGA2Q08379 1002 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms