RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	EVC2	Q86UK5	1308 aa		6.11	□□□□□ -1.43
SYNE2-223	ENST00000557005	MINK1	Q8N4C8	1332 aa	Predicted RBP	6.11	□□□□□ -1.43
SYNE2-223	ENST00000557005	HMMR	O75330	724 aa		6.11	□□□□□ -1.43
SYNE2-223	ENST00000557005	JPH4	Q96JJ6	628 aa		6.11	□□□□□ -1.43
SYNE2-223	ENST00000557005	TCOF1	Q13428	1488 aa	Known RBP	6.11	□□□□□ -1.43
SYNE2-223	ENST00000557005	DIAPH1	O60610	1272 aa	Known RBP	6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	MLEC	Q14165	292 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	PDE3A	Q14432	1141 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	ADGB	Q8N7X0	1667 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	EFCAB2	Q5VUJ9	269 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	CCDC9	Q9Y3X0	531 aa	Known RBP	6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	KIF21A	Q7Z4S6	1674 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	FAM135A	Q9P2D6	1515 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	DUSP27	Q5VZP5	1158 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	RAPGEF6	Q8TEU7	1601 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	ZMYM4	Q5VZL5	1548 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	LRPPRC	P42704	1394 aa	Known RBP	6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	MAP4K4	O95819	1239 aa	Predicted RBP	6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	NUCB2	P80303	420 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	GPRASP1	Q5JY77	1395 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	MTHFS	P49914	203 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	WWC1	Q8IX03	1113 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	PANK2	Q9BZ23	570 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	GGNBP2	Q9H3C7	697 aa		6.1	□□□□□ -1.43
SYNE2-223	ENST00000557005	GNL2	Q13823	731 aa	Known RBP	6.09	□□□□□ -1.43
SYNE2-223	ENST00000557005	TMEM132E	Q6IEE7	984 aa		6.09	□□□□□ -1.43
SYNE2-223	ENST00000557005	SPC24	Q8NBT2	197 aa		6.09	□□□□□ -1.43
SYNE2-223	ENST00000557005	CHD1L	Q86WJ1	897 aa		6.09	□□□□□ -1.43
SYNE2-223	ENST00000557005	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	6.09	□□□□□ -1.43
SYNE2-223	ENST00000557005	TNPO1	Q92973	898 aa	Known RBP	6.09	□□□□□ -1.43
SYNE2-223	ENST00000557005	SSFA2	P28290	1259 aa		6.09	□□□□□ -1.43
SYNE2-223	ENST00000557005	RRAGD	Q9NQL2	400 aa	Predicted RBP	6.09	□□□□□ -1.43
SYNE2-223	ENST00000557005	NSD3	Q9BZ95	1437 aa		6.09	□□□□□ -1.43
SYNE2-223	ENST00000557005	ESPN	B1AK53	854 aa		6.09	□□□□□ -1.43
SYNE2-223	ENST00000557005	RSPH4A	Q5TD94	716 aa		6.09	□□□□□ -1.43
SYNE2-223	ENST00000557005	DNMT1	P26358	1616 aa	Known RBP	6.09	□□□□□ -1.44
SYNE2-223	ENST00000557005	STK31	Q9BXU1	1019 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	TRO	Q12816	1431 aa	Predicted RBP	6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	SCAPER	Q9BY12	1400 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	SEC24B	O95487	1268 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	TNNT3	P45378	269 aa	Predicted RBP	6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	GPATCH3	Q96I76	525 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	TPM4	P67936	248 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	LMOD3	Q0VAK6	560 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	CFAP70	Q5T0N1	1121 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	RBM27	Q9P2N5	1060 aa	Known RBP	6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	PTPRG	P23470	1445 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	WASHC2C	Q9Y4E1	1318 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005		A0A0G2JS52	829 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	NRDC	O43847	1150 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	XPC	Q01831	940 aa	Predicted RBP	6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	IFT57	Q9NWB7	429 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	PODXL2	Q9NZ53	605 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005		H3BQV1	296 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	IFFO2	Q5TF58	517 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	TMEM57	Q8N5G2	664 aa		6.08	□□□□□ -1.44
SYNE2-223	ENST00000557005	SYCE3	A1L190	88 aa		6.07	□□□□□ -1.44
SYNE2-223	ENST00000557005	REC8	O95072	547 aa		6.07	□□□□□ -1.44
SYNE2-223	ENST00000557005	XRCC6	P12956	609 aa	Known RBP eCLIP	6.07	□□□□□ -1.44
SYNE2-223	ENST00000557005	AAMP	Q13685	434 aa		6.07	□□□□□ -1.44
SYNE2-223	ENST00000557005	ZMYND15	Q9H091	742 aa		6.07	□□□□□ -1.44
SYNE2-223	ENST00000557005	NUTM2F	A1L443	756 aa		6.07	□□□□□ -1.44
SYNE2-223	ENST00000557005	TULP1	O00294	542 aa	Predicted RBP	6.07	□□□□□ -1.44
SYNE2-223	ENST00000557005	TNN	Q9UQP3	1299 aa		6.07	□□□□□ -1.44
SYNE2-223	ENST00000557005	PBRM1	Q86U86	1689 aa		6.07	□□□□□ -1.44
SYNE2-223	ENST00000557005	KDM5C	P41229	1560 aa		6.07	□□□□□ -1.44
SYNE2-223	ENST00000557005	RARS	P54136	660 aa	Known RBP	6.07	□□□□□ -1.44
SYNE2-223	ENST00000557005	LMOD2	Q6P5Q4	547 aa		6.07	□□□□□ -1.44
SYNE2-223	ENST00000557005	TEX14	Q8IWB6	1497 aa		6.07	□□□□□ -1.44
SYNE2-223	ENST00000557005	TPD52L1	Q16890	204 aa	Predicted RBP	6.07	□□□□□ -1.44
SYNE2-223	ENST00000557005	CBX1	P83916	185 aa		6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	WDR62	O43379	1518 aa		6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	KDM2B	Q8NHM5	1336 aa		6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	VPS37C	A5D8V6	355 aa	Predicted RBP	6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	SMARCA5	O60264	1052 aa	Predicted RBP	6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	RABEP1	Q15276	862 aa		6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	WDR63	Q8IWG1	891 aa		6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	LTV1	Q96GA3	475 aa	Predicted RBP	6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	PARD3	Q8TEW0	1356 aa		6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	PLB1	Q6P1J6	1458 aa		6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	MRC2	Q9UBG0	1479 aa		6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	EIF2AK4	Q9P2K8	1649 aa	Known RBP	6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	HTATSF1	O43719	755 aa	Known RBP	6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	TBC1D32	Q96NH3	1257 aa		6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	URB2	Q14146	1524 aa	Known RBP	6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	ASXL1	Q8IXJ9	1541 aa		6.06	□□□□□ -1.44
SYNE2-223	ENST00000557005	SYNJ2	O15056	1496 aa		6.05	□□□□□ -1.44
SYNE2-223	ENST00000557005	PLEKHH1	Q9ULM0	1364 aa		6.05	□□□□□ -1.44
SYNE2-223	ENST00000557005	GCC1	Q96CN9	775 aa		6.05	□□□□□ -1.44
SYNE2-223	ENST00000557005	SMC3	Q9UQE7	1217 aa		6.05	□□□□□ -1.44
SYNE2-223	ENST00000557005	GOLGA6L19	H0YKK7	550 aa		6.05	□□□□□ -1.44
SYNE2-223	ENST00000557005	COG3	Q96JB2	828 aa		6.05	□□□□□ -1.44
SYNE2-223	ENST00000557005	API5	Q9BZZ5	524 aa	Known RBP	6.05	□□□□□ -1.44
SYNE2-223	ENST00000557005	PZP	P20742	1482 aa		6.05	□□□□□ -1.44
SYNE2-223	ENST00000557005	MAGI3	Q5TCQ9	1506 aa		6.05	□□□□□ -1.44
SYNE2-223	ENST00000557005	CREBRF	Q8IUR6	639 aa		6.05	□□□□□ -1.44
SYNE2-223	ENST00000557005	DIAPH3	Q9NSV4	1193 aa		6.05	□□□□□ -1.44
SYNE2-223	ENST00000557005	ZSCAN23	Q3MJ62	389 aa		6.05	□□□□□ -1.44
SYNE2-223	ENST00000557005	GORAB	Q5T7V8	394 aa		6.05	□□□□□ -1.44
SYNE2-223	ENST00000557005	SLC12A5	Q9H2X9	1139 aa		6.05	□□□□□ -1.44

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