RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 GUCA2AQ02747 115 aa8.55□□□□□ -1.04
SRP54-212ENST00000556992 LMOD2Q6P5Q4 547 aa8.55□□□□□ -1.04
SRP54-212ENST00000556992 SALL2Q9Y467 1007 aaPredicted RBP8.55□□□□□ -1.04
SRP54-212ENST00000556992 AVPP01185 164 aa8.54□□□□□ -1.04
SRP54-212ENST00000556992 TRIM32Q13049 653 aa8.53□□□□□ -1.04
SRP54-212ENST00000556992 J3QL48 77 aa8.52□□□□□ -1.05
SRP54-212ENST00000556992 KDM4AO75164 1064 aa8.52□□□□□ -1.05
SRP54-212ENST00000556992 TREML4Q6UXN2 200 aa8.52□□□□□ -1.05
SRP54-212ENST00000556992 CRIPAKQ8N1N5 446 aa8.52□□□□□ -1.05
SRP54-212ENST00000556992 CCDC24Q8N4L8 307 aa8.52□□□□□ -1.05
SRP54-212ENST00000556992 C11orf95C9JLR9 678 aaPredicted RBP8.51□□□□□ -1.05
SRP54-212ENST00000556992 SMPD1P17405 629 aa8.51□□□□□ -1.05
SRP54-212ENST00000556992 MAP2K5Q13163 448 aa8.51□□□□□ -1.05
SRP54-212ENST00000556992 GRIPAP1Q4V328 841 aa8.51□□□□□ -1.05
SRP54-212ENST00000556992 LCE2AQ5TA79 106 aaPredicted RBP8.51□□□□□ -1.05
SRP54-212ENST00000556992 SYMPKQ92797 1274 aaKnown RBP8.51□□□□□ -1.05
SRP54-212ENST00000556992 MRGPRX2Q96LB1 330 aa8.51□□□□□ -1.05
SRP54-212ENST00000556992 MMP16P51512 607 aa8.5□□□□□ -1.05
SRP54-212ENST00000556992 USB1Q9BQ65 265 aaKnown RBP8.5□□□□□ -1.05
SRP54-212ENST00000556992 WNT7AO00755 349 aa8.49□□□□□ -1.05
SRP54-212ENST00000556992 IRF6O14896 467 aa8.49□□□□□ -1.05
SRP54-212ENST00000556992 Q3C1V9 767 aa8.49□□□□□ -1.05
SRP54-212ENST00000556992 DXOO77932 396 aaKnown RBP8.48□□□□□ -1.05
SRP54-212ENST00000556992 CCDC102AQ96A19 550 aa8.48□□□□□ -1.05
SRP54-212ENST00000556992 HOXA2O43364 376 aa8.47□□□□□ -1.05
SRP54-212ENST00000556992 SKOR1P84550 965 aa8.47□□□□□ -1.05
SRP54-212ENST00000556992 CTC1Q2NKJ3 1217 aa8.47□□□□□ -1.05
SRP54-212ENST00000556992 SNIP1Q8TAD8 396 aaKnown RBP8.47□□□□□ -1.05
SRP54-212ENST00000556992 HPS1Q92902 700 aa8.47□□□□□ -1.05
SRP54-212ENST00000556992 SNRPBP14678 240 aaKnown RBP8.46□□□□□ -1.06
SRP54-212ENST00000556992 ATP13A2Q9NQ11 1180 aa8.46□□□□□ -1.06
SRP54-212ENST00000556992 SMCPP49901 116 aaPredicted RBP8.45□□□□□ -1.06
SRP54-212ENST00000556992 WFS1O76024 890 aa8.44□□□□□ -1.06
SRP54-212ENST00000556992 RC3H1Q5TC82 1133 aaKnown RBP8.44□□□□□ -1.06
SRP54-212ENST00000556992 NFX1Q12986 1120 aaKnown RBP8.43□□□□□ -1.06
SRP54-212ENST00000556992 LCE2CQ5TA81 110 aa8.43□□□□□ -1.06
SRP54-212ENST00000556992 REPIN1Q9BWE0 567 aaKnown RBP8.43□□□□□ -1.06
SRP54-212ENST00000556992 PTCRAQ6ISU1 281 aaPredicted RBP8.42□□□□□ -1.06
SRP54-212ENST00000556992 FAM217BQ9NTX9 383 aaPredicted RBP8.42□□□□□ -1.06
SRP54-212ENST00000556992 MINK1Q8N4C8 1332 aaPredicted RBP8.42□□□□□ -1.06
SRP54-212ENST00000556992 JUNDP17535 347 aa8.41□□□□□ -1.06
SRP54-212ENST00000556992 GPCPD1Q9NPB8 672 aa8.41□□□□□ -1.06
SRP54-212ENST00000556992 ALDH1A1P00352 501 aa8.4□□□□□ -1.06
SRP54-212ENST00000556992 USP46P62068 366 aa8.4□□□□□ -1.06
SRP54-212ENST00000556992 NUDT12Q9BQG2 462 aa8.39□□□□□ -1.07
SRP54-212ENST00000556992 PCDHGC3Q9UN70 934 aa8.39□□□□□ -1.07
SRP54-212ENST00000556992 CLCN1P35523 988 aa8.38□□□□□ -1.07
SRP54-212ENST00000556992 NUTM1Q86Y26 1132 aa8.38□□□□□ -1.07
SRP54-212ENST00000556992 C6orf229H3BNL8 230 aa8.37□□□□□ -1.07
SRP54-212ENST00000556992 TULP1O00294 542 aaPredicted RBP8.37□□□□□ -1.07
SRP54-212ENST00000556992 BMP1P13497 986 aa8.37□□□□□ -1.07
SRP54-212ENST00000556992 KRI1Q8N9T8 703 aaKnown RBP8.37□□□□□ -1.07
SRP54-212ENST00000556992 TRIM47Q96LD4 638 aa8.37□□□□□ -1.07
SRP54-212ENST00000556992 FDX1P10109 184 aa8.36□□□□□ -1.07
SRP54-212ENST00000556992 NDUFV2P19404 249 aa8.36□□□□□ -1.07
SRP54-212ENST00000556992 WNT7BP56706 349 aa8.36□□□□□ -1.07
SRP54-212ENST00000556992 LINC01559Q495D7 138 aa8.35□□□□□ -1.07
SRP54-212ENST00000556992 RETREG3Q86VR2 466 aa8.35□□□□□ -1.07
SRP54-212ENST00000556992 EHBP1Q8NDI1 1231 aa8.35□□□□□ -1.07
SRP54-212ENST00000556992 TERTO14746 1132 aaKnown RBP8.34□□□□□ -1.07
SRP54-212ENST00000556992 SIAH2O43255 324 aa8.34□□□□□ -1.07
SRP54-212ENST00000556992 SSTR3P32745 418 aaPredicted RBP8.33□□□□□ -1.08
SRP54-212ENST00000556992 SH3BP2P78314 561 aa8.33□□□□□ -1.08
SRP54-212ENST00000556992 SPIRE2Q8WWL2 714 aa8.33□□□□□ -1.08
SRP54-212ENST00000556992 SENP2Q9HC62 589 aa8.33□□□□□ -1.08
SRP54-212ENST00000556992 TLL2Q9Y6L7 1015 aa8.33□□□□□ -1.08
SRP54-212ENST00000556992 MOXD2PA6NHM9 499 aa8.32□□□□□ -1.08
SRP54-212ENST00000556992 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.32□□□□□ -1.08
SRP54-212ENST00000556992 TRIM46Q7Z4K8 759 aa8.32□□□□□ -1.08
SRP54-212ENST00000556992 CCNYL3P0C7X3 344 aa8.31□□□□□ -1.08
SRP54-212ENST00000556992 MS4A1P11836 297 aa8.31□□□□□ -1.08
SRP54-212ENST00000556992 VEGFBP49765 207 aa8.31□□□□□ -1.08
SRP54-212ENST00000556992 WASF2Q9Y6W5 498 aa8.31□□□□□ -1.08
SRP54-212ENST00000556992 WIPF1O43516 503 aa8.3□□□□□ -1.08
SRP54-212ENST00000556992 TTLL12Q14166 644 aaPredicted RBP8.3□□□□□ -1.08
SRP54-212ENST00000556992 VSIG10Q8N0Z9 540 aa8.3□□□□□ -1.08
SRP54-212ENST00000556992 BAP1Q92560 729 aa8.3□□□□□ -1.08
SRP54-212ENST00000556992 UNC93B1Q9H1C4 597 aa8.3□□□□□ -1.08
SRP54-212ENST00000556992 CAPN5O15484 640 aaPredicted RBP8.29□□□□□ -1.08
SRP54-212ENST00000556992 PRR7Q8TB68 274 aa8.28□□□□□ -1.08
SRP54-212ENST00000556992 KIFC2Q96AC6 838 aa8.28□□□□□ -1.08
SRP54-212ENST00000556992 PTPRNQ16849 979 aa8.26□□□□□ -1.09
SRP54-212ENST00000556992 GIGYF2Q6Y7W6 1299 aaKnown RBP8.26□□□□□ -1.09
SRP54-212ENST00000556992 EVA1BQ9NVM1 165 aa8.26□□□□□ -1.09
SRP54-212ENST00000556992 INSM1Q01101 510 aaPredicted RBP8.25□□□□□ -1.09
SRP54-212ENST00000556992 KCNH2Q12809 1159 aa8.25□□□□□ -1.09
SRP54-212ENST00000556992 STK17AQ9UEE5 414 aa8.25□□□□□ -1.09
SRP54-212ENST00000556992 MTMR2Q13614 643 aa8.24□□□□□ -1.09
SRP54-212ENST00000556992 ZNF511Q8NB15 262 aa8.24□□□□□ -1.09
SRP54-212ENST00000556992 BEGAINQ9BUH8 593 aa8.24□□□□□ -1.09
SRP54-212ENST00000556992 PCDHB15Q9Y5E8 787 aa8.24□□□□□ -1.09
SRP54-212ENST00000556992 SOBPA7XYQ1 873 aa8.23□□□□□ -1.09
SRP54-212ENST00000556992 CTHP32929 405 aa8.23□□□□□ -1.09
SRP54-212ENST00000556992 GMPRP36959 345 aa8.23□□□□□ -1.09
SRP54-212ENST00000556992 NNTQ13423 1086 aa8.23□□□□□ -1.09
SRP54-212ENST00000556992 BARGINQ6ZT62 677 aa8.23□□□□□ -1.09
SRP54-212ENST00000556992 ZFP42Q96MM3 310 aa8.23□□□□□ -1.09
SRP54-212ENST00000556992 NXF1Q9UBU9 619 aaKnown RBP8.23□□□□□ -1.09
SRP54-212ENST00000556992 TBC1D2Q9BYX2 928 aa8.22□□□□□ -1.09
SRP54-212ENST00000556992 CFAP99D6REC4 459 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms