RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 ZBTB24O43167 697 aaPredicted RBP10.56□□□□□ -0.72
PRPF39-210ENST00000556718 SLC24A1O60721 1099 aa10.56□□□□□ -0.72
PRPF39-210ENST00000556718 MDM2Q00987 491 aaPredicted RBP10.56□□□□□ -0.72
PRPF39-210ENST00000556718 MMP16P51512 607 aa10.55□□□□□ -0.72
PRPF39-210ENST00000556718 IRF6O14896 467 aa10.54□□□□□ -0.72
PRPF39-210ENST00000556718 KDM4AO75164 1064 aa10.54□□□□□ -0.72
PRPF39-210ENST00000556718 Q3C1V9 767 aa10.54□□□□□ -0.72
PRPF39-210ENST00000556718 GMPR2Q9P2T1 348 aaKnown RBP10.54□□□□□ -0.72
PRPF39-210ENST00000556718 TTC24A2A3L6 582 aaPredicted RBP10.53□□□□□ -0.72
PRPF39-210ENST00000556718 AXIN1O15169 862 aa10.53□□□□□ -0.72
PRPF39-210ENST00000556718 TRIM32Q13049 653 aa10.52□□□□□ -0.73
PRPF39-210ENST00000556718 LCE2AQ5TA79 106 aaPredicted RBP10.52□□□□□ -0.73
PRPF39-210ENST00000556718 USB1Q9BQ65 265 aaKnown RBP10.52□□□□□ -0.73
PRPF39-210ENST00000556718 WNT7AO00755 349 aa10.51□□□□□ -0.73
PRPF39-210ENST00000556718 DXOO77932 396 aaKnown RBP10.51□□□□□ -0.73
PRPF39-210ENST00000556718 SMPD1P17405 629 aa10.51□□□□□ -0.73
PRPF39-210ENST00000556718 GUCA2AQ02747 115 aa10.51□□□□□ -0.73
PRPF39-210ENST00000556718 TREML4Q6UXN2 200 aa10.51□□□□□ -0.73
PRPF39-210ENST00000556718 MRGPRX2Q96LB1 330 aa10.5□□□□□ -0.73
PRPF39-210ENST00000556718 J3QL48 77 aa10.49□□□□□ -0.73
PRPF39-210ENST00000556718 HOXA2O43364 376 aa10.49□□□□□ -0.73
PRPF39-210ENST00000556718 SMCPP49901 116 aaPredicted RBP10.49□□□□□ -0.73
PRPF39-210ENST00000556718 CTC1Q2NKJ3 1217 aa10.49□□□□□ -0.73
PRPF39-210ENST00000556718 CCDC102AQ96A19 550 aa10.49□□□□□ -0.73
PRPF39-210ENST00000556718 CCDC24Q8N4L8 307 aa10.48□□□□□ -0.73
PRPF39-210ENST00000556718 SNIP1Q8TAD8 396 aaKnown RBP10.48□□□□□ -0.73
PRPF39-210ENST00000556718 MINK1Q8N4C8 1332 aaPredicted RBP10.48□□□□□ -0.73
PRPF39-210ENST00000556718 C11orf95C9JLR9 678 aaPredicted RBP10.47□□□□□ -0.73
PRPF39-210ENST00000556718 SKOR1P84550 965 aa10.47□□□□□ -0.73
PRPF39-210ENST00000556718 SYMPKQ92797 1274 aaKnown RBP10.47□□□□□ -0.73
PRPF39-210ENST00000556718 USP46P62068 366 aa10.46□□□□□ -0.73
PRPF39-210ENST00000556718 FAM217BQ9NTX9 383 aaPredicted RBP10.44□□□□□ -0.74
PRPF39-210ENST00000556718 HPS1Q92902 700 aa10.43□□□□□ -0.74
PRPF39-210ENST00000556718 RC3H1Q5TC82 1133 aaKnown RBP10.42□□□□□ -0.74
PRPF39-210ENST00000556718 GPCPD1Q9NPB8 672 aa10.42□□□□□ -0.74
PRPF39-210ENST00000556718 ATP13A2Q9NQ11 1180 aa10.42□□□□□ -0.74
PRPF39-210ENST00000556718 TULP1O00294 542 aaPredicted RBP10.41□□□□□ -0.74
PRPF39-210ENST00000556718 JUNDP17535 347 aa10.41□□□□□ -0.74
PRPF39-210ENST00000556718 REPIN1Q9BWE0 567 aaKnown RBP10.41□□□□□ -0.74
PRPF39-210ENST00000556718 SNRPBP14678 240 aaKnown RBP10.4□□□□□ -0.74
PRPF39-210ENST00000556718 WFS1O76024 890 aa10.39□□□□□ -0.75
PRPF39-210ENST00000556718 CLCN1P35523 988 aa10.39□□□□□ -0.75
PRPF39-210ENST00000556718 NFX1Q12986 1120 aaKnown RBP10.39□□□□□ -0.75
PRPF39-210ENST00000556718 PTCRAQ6ISU1 281 aaPredicted RBP10.39□□□□□ -0.75
PRPF39-210ENST00000556718 VSIG10Q8N0Z9 540 aa10.38□□□□□ -0.75
PRPF39-210ENST00000556718 PCDHGC3Q9UN70 934 aa10.38□□□□□ -0.75
PRPF39-210ENST00000556718 WNT7BP56706 349 aa10.37□□□□□ -0.75
PRPF39-210ENST00000556718 NUTM1Q86Y26 1132 aa10.37□□□□□ -0.75
PRPF39-210ENST00000556718 LCE2CQ5TA81 110 aa10.36□□□□□ -0.75
PRPF39-210ENST00000556718 RETREG3Q86VR2 466 aa10.36□□□□□ -0.75
PRPF39-210ENST00000556718 NUDT12Q9BQG2 462 aa10.35□□□□□ -0.75
PRPF39-210ENST00000556718 FDX1P10109 184 aa10.34□□□□□ -0.75
PRPF39-210ENST00000556718 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.34□□□□□ -0.75
PRPF39-210ENST00000556718 TRIM47Q96LD4 638 aa10.34□□□□□ -0.75
PRPF39-210ENST00000556718 ALDH1A1P00352 501 aa10.33□□□□□ -0.76
PRPF39-210ENST00000556718 KRI1Q8N9T8 703 aaKnown RBP10.33□□□□□ -0.76
PRPF39-210ENST00000556718 SIAH2O43255 324 aa10.32□□□□□ -0.76
PRPF39-210ENST00000556718 SSTR3P32745 418 aaPredicted RBP10.32□□□□□ -0.76
PRPF39-210ENST00000556718 C6orf229H3BNL8 230 aa10.31□□□□□ -0.76
PRPF39-210ENST00000556718 NDUFV2P19404 249 aa10.31□□□□□ -0.76
PRPF39-210ENST00000556718 SPIRE2Q8WWL2 714 aa10.31□□□□□ -0.76
PRPF39-210ENST00000556718 SENP2Q9HC62 589 aa10.3□□□□□ -0.76
PRPF39-210ENST00000556718 MOXD2PA6NHM9 499 aa10.29□□□□□ -0.76
PRPF39-210ENST00000556718 MS4A1P11836 297 aa10.29□□□□□ -0.76
PRPF39-210ENST00000556718 SH3BP2P78314 561 aa10.29□□□□□ -0.76
PRPF39-210ENST00000556718 EHBP1Q8NDI1 1231 aa10.29□□□□□ -0.76
PRPF39-210ENST00000556718 TERTO14746 1132 aaKnown RBP10.28□□□□□ -0.76
PRPF39-210ENST00000556718 CCNYL3P0C7X3 344 aa10.28□□□□□ -0.76
PRPF39-210ENST00000556718 WIPF1O43516 503 aa10.27□□□□□ -0.77
PRPF39-210ENST00000556718 BMP1P13497 986 aa10.25□□□□□ -0.77
PRPF39-210ENST00000556718 TTLL12Q14166 644 aaPredicted RBP10.25□□□□□ -0.77
PRPF39-210ENST00000556718 LINC01559Q495D7 138 aa10.25□□□□□ -0.77
PRPF39-210ENST00000556718 TRIM46Q7Z4K8 759 aa10.25□□□□□ -0.77
PRPF39-210ENST00000556718 KIFC2Q96AC6 838 aa10.25□□□□□ -0.77
PRPF39-210ENST00000556718 UNC93B1Q9H1C4 597 aa10.25□□□□□ -0.77
PRPF39-210ENST00000556718 PTPRNQ16849 979 aa10.24□□□□□ -0.77
PRPF39-210ENST00000556718 BARGINQ6ZT62 677 aa10.24□□□□□ -0.77
PRPF39-210ENST00000556718 PRR7Q8TB68 274 aa10.24□□□□□ -0.77
PRPF39-210ENST00000556718 WASF2Q9Y6W5 498 aa10.24□□□□□ -0.77
PRPF39-210ENST00000556718 BAP1Q92560 729 aa10.23□□□□□ -0.77
PRPF39-210ENST00000556718 EVA1BQ9NVM1 165 aa10.23□□□□□ -0.77
PRPF39-210ENST00000556718 TLL2Q9Y6L7 1015 aa10.23□□□□□ -0.77
PRPF39-210ENST00000556718 CAPN5O15484 640 aaPredicted RBP10.22□□□□□ -0.77
PRPF39-210ENST00000556718 ZMYND10O75800 440 aa10.22□□□□□ -0.77
PRPF39-210ENST00000556718 GIGYF2Q6Y7W6 1299 aaKnown RBP10.22□□□□□ -0.77
PRPF39-210ENST00000556718 KCNH2Q12809 1159 aa10.21□□□□□ -0.77
PRPF39-210ENST00000556718 AMHR2Q16671 573 aa10.21□□□□□ -0.77
PRPF39-210ENST00000556718 MTMR2Q13614 643 aa10.2□□□□□ -0.78
PRPF39-210ENST00000556718 ZC3H15Q8WU90 426 aaKnown RBP10.2□□□□□ -0.78
PRPF39-210ENST00000556718 BEGAINQ9BUH8 593 aa10.2□□□□□ -0.78
PRPF39-210ENST00000556718 STK17AQ9UEE5 414 aa10.2□□□□□ -0.78
PRPF39-210ENST00000556718 INSM1Q01101 510 aaPredicted RBP10.18□□□□□ -0.78
PRPF39-210ENST00000556718 ZNF511Q8NB15 262 aa10.18□□□□□ -0.78
PRPF39-210ENST00000556718 TBC1D2Q9BYX2 928 aa10.17□□□□□ -0.78
PRPF39-210ENST00000556718 PCDHB15Q9Y5E8 787 aa10.17□□□□□ -0.78
PRPF39-210ENST00000556718 VEGFBP49765 207 aa10.16□□□□□ -0.78
PRPF39-210ENST00000556718 CFAP99D6REC4 459 aa10.15□□□□□ -0.78
PRPF39-210ENST00000556718 DESI1Q6ICB0 168 aa10.15□□□□□ -0.78
PRPF39-210ENST00000556718 RSBN1LQ6PCB5 846 aaPredicted RBP10.15□□□□□ -0.78
PRPF39-210ENST00000556718 NXF1Q9UBU9 619 aaKnown RBP10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms