RNA–Protein interactions for RNA: ENST00000555961.1

NEK9-208, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 288 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-208ENST00000555961 LMOD2Q6P5Q4 547 aa4.27□□□□□ -1.73
NEK9-208ENST00000555961 LIAT1Q6ZQX7 453 aa4.27□□□□□ -1.73
NEK9-208ENST00000555961 TNFRSF10AO00220 468 aa4.26□□□□□ -1.73
NEK9-208ENST00000555961 CD2BP2O95400 341 aaKnown RBP4.26□□□□□ -1.73
NEK9-208ENST00000555961 RPIAP49247 311 aa4.26□□□□□ -1.73
NEK9-208ENST00000555961 FOXC1Q12948 553 aa4.26□□□□□ -1.73
NEK9-208ENST00000555961 SLC27A5Q9Y2P5 690 aa4.26□□□□□ -1.73
NEK9-208ENST00000555961 FCF1Q9Y324 198 aaKnown RBP4.26□□□□□ -1.73
NEK9-208ENST00000555961 SALL2Q9Y467 1007 aaPredicted RBP4.26□□□□□ -1.73
NEK9-208ENST00000555961 MINK1Q8N4C8 1332 aaPredicted RBP4.25□□□□□ -1.73
NEK9-208ENST00000555961 USP46P62068 366 aa4.25□□□□□ -1.73
NEK9-208ENST00000555961 MDM2Q00987 491 aaPredicted RBP4.25□□□□□ -1.73
NEK9-208ENST00000555961 KRTAP4-12Q9BQ66 201 aa4.25□□□□□ -1.73
NEK9-208ENST00000555961 IRF6O14896 467 aa4.24□□□□□ -1.73
NEK9-208ENST00000555961 KDM4AO75164 1064 aa4.24□□□□□ -1.73
NEK9-208ENST00000555961 CD46P15529 392 aa4.24□□□□□ -1.73
NEK9-208ENST00000555961 CLCN1P35523 988 aa4.24□□□□□ -1.73
NEK9-208ENST00000555961 MSS51Q4VC12 460 aa4.24□□□□□ -1.73
NEK9-208ENST00000555961 BRICD5Q6PL45 260 aa4.24□□□□□ -1.73
NEK9-208ENST00000555961 TRIM67Q6ZTA4 783 aa4.24□□□□□ -1.73
NEK9-208ENST00000555961 PHOX2BQ99453 314 aa4.24□□□□□ -1.73
NEK9-208ENST00000555961 NUTM1Q86Y26 1132 aa4.23□□□□□ -1.73
NEK9-208ENST00000555961 CYP4X1Q8N118 509 aa4.23□□□□□ -1.73
NEK9-208ENST00000555961 EMID1Q96A84 441 aaPredicted RBP4.23□□□□□ -1.73
NEK9-208ENST00000555961 THAP11Q96EK4 314 aa4.23□□□□□ -1.73
NEK9-208ENST00000555961 BCANQ96GW7 911 aa4.23□□□□□ -1.73
NEK9-208ENST00000555961 TTC24A2A3L6 582 aaPredicted RBP4.22□□□□□ -1.73
NEK9-208ENST00000555961 GDF9O60383 454 aa4.22□□□□□ -1.73
NEK9-208ENST00000555961 MYT1Q01538 1121 aa4.22□□□□□ -1.73
NEK9-208ENST00000555961 PLA2G2CQ5R387 149 aa4.22□□□□□ -1.73
NEK9-208ENST00000555961 RNF19BQ6ZMZ0 732 aa4.22□□□□□ -1.73
NEK9-208ENST00000555961 FAM160A2Q8N612 972 aaPredicted RBP4.22□□□□□ -1.73
NEK9-208ENST00000555961 CCDC102AQ96A19 550 aa4.22□□□□□ -1.73
NEK9-208ENST00000555961 USB1Q9BQ65 265 aaKnown RBP4.22□□□□□ -1.73
NEK9-208ENST00000555961 GPCPD1Q9NPB8 672 aa4.22□□□□□ -1.73
NEK9-208ENST00000555961 PRDM9Q9NQV7 894 aa4.22□□□□□ -1.73
NEK9-208ENST00000555961 KRTAP5-3Q6L8H2 238 aa4.21□□□□□ -1.74
NEK9-208ENST00000555961 CCDC24Q8N4L8 307 aa4.21□□□□□ -1.74
NEK9-208ENST00000555961 HOXA2O43364 376 aa4.2□□□□□ -1.74
NEK9-208ENST00000555961 KRTAP9-8Q9BYQ0 159 aa4.2□□□□□ -1.74
NEK9-208ENST00000555961 PKD2L1Q9P0L9 805 aa4.2□□□□□ -1.74
NEK9-208ENST00000555961 MMP16P51512 607 aa4.19□□□□□ -1.74
NEK9-208ENST00000555961 NFX1Q12986 1120 aaKnown RBP4.19□□□□□ -1.74
NEK9-208ENST00000555961 TRIM32Q13049 653 aa4.19□□□□□ -1.74
NEK9-208ENST00000555961 TTLL12Q14166 644 aaPredicted RBP4.19□□□□□ -1.74
NEK9-208ENST00000555961 CTC1Q2NKJ3 1217 aa4.19□□□□□ -1.74
NEK9-208ENST00000555961 REPIN1Q9BWE0 567 aaKnown RBP4.19□□□□□ -1.74
NEK9-208ENST00000555961 KRTAP4-2Q9BYR5 136 aa4.19□□□□□ -1.74
NEK9-208ENST00000555961 WNT7AO00755 349 aa4.18□□□□□ -1.74
NEK9-208ENST00000555961 AXIN1O15169 862 aa4.18□□□□□ -1.74
NEK9-208ENST00000555961 DXOO77932 396 aaKnown RBP4.18□□□□□ -1.74
NEK9-208ENST00000555961 JUNDP17535 347 aa4.18□□□□□ -1.74
NEK9-208ENST00000555961 LCE1DQ5T752 114 aa4.18□□□□□ -1.74
NEK9-208ENST00000555961 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.18□□□□□ -1.74
NEK9-208ENST00000555961 FAM217BQ9NTX9 383 aaPredicted RBP4.18□□□□□ -1.74
NEK9-208ENST00000555961 C6orf229H3BNL8 230 aa4.17□□□□□ -1.74
NEK9-208ENST00000555961 ST8SIA5O15466 376 aa4.17□□□□□ -1.74
NEK9-208ENST00000555961 FDX1P10109 184 aa4.17□□□□□ -1.74
NEK9-208ENST00000555961 LORP23490 312 aaPredicted RBP4.17□□□□□ -1.74
NEK9-208ENST00000555961 RETREG3Q86VR2 466 aa4.17□□□□□ -1.74
NEK9-208ENST00000555961 SNIP1Q8TAD8 396 aaKnown RBP4.17□□□□□ -1.74
NEK9-208ENST00000555961 TOR4AQ9NXH8 423 aa4.17□□□□□ -1.74
NEK9-208ENST00000555961 SSTR3P32745 418 aaPredicted RBP4.16□□□□□ -1.74
NEK9-208ENST00000555961 WNT7BP56706 349 aa4.16□□□□□ -1.74
NEK9-208ENST00000555961 GUCA2AQ02747 115 aa4.16□□□□□ -1.74
NEK9-208ENST00000555961 CRIPAKQ8N1N5 446 aa4.16□□□□□ -1.74
NEK9-208ENST00000555961 HLA-CQ95604 372 aa4.16□□□□□ -1.74
NEK9-208ENST00000555961 NUDT12Q9BQG2 462 aa4.16□□□□□ -1.74
NEK9-208ENST00000555961 AAASQ9NRG9 546 aa4.16□□□□□ -1.74
NEK9-208ENST00000555961 C11orf95C9JLR9 678 aaPredicted RBP4.15□□□□□ -1.75
NEK9-208ENST00000555961 AVPP01185 164 aa4.15□□□□□ -1.75
NEK9-208ENST00000555961 MS4A1P11836 297 aa4.15□□□□□ -1.75
NEK9-208ENST00000555961 DIXDC1Q155Q3 683 aa4.15□□□□□ -1.75
NEK9-208ENST00000555961 BARGINQ6ZT62 677 aa4.15□□□□□ -1.75
NEK9-208ENST00000555961 MRGPRX2Q96LB1 330 aa4.15□□□□□ -1.75
NEK9-208ENST00000555961 SMCPP49901 116 aaPredicted RBP4.14□□□□□ -1.75
NEK9-208ENST00000555961 RC3H1Q5TC82 1133 aaKnown RBP4.14□□□□□ -1.75
NEK9-208ENST00000555961 ZSCAN1Q8NBB4 408 aa4.14□□□□□ -1.75
NEK9-208ENST00000555961 SPDYE5A6NIY4 337 aa4.13□□□□□ -1.75
NEK9-208ENST00000555961 ZMYND10O75800 440 aa4.13□□□□□ -1.75
NEK9-208ENST00000555961 CCNYL3P0C7X3 344 aa4.13□□□□□ -1.75
NEK9-208ENST00000555961 SMPD1P17405 629 aa4.13□□□□□ -1.75
NEK9-208ENST00000555961 AMHR2Q16671 573 aa4.13□□□□□ -1.75
NEK9-208ENST00000555961 GIGYF2Q6Y7W6 1299 aaKnown RBP4.13□□□□□ -1.75
NEK9-208ENST00000555961 EHBP1Q8NDI1 1231 aa4.13□□□□□ -1.75
NEK9-208ENST00000555961 SPIRE2Q8WWL2 714 aa4.13□□□□□ -1.75
NEK9-208ENST00000555961 SYMPKQ92797 1274 aaKnown RBP4.13□□□□□ -1.75
NEK9-208ENST00000555961 SENP2Q9HC62 589 aa4.13□□□□□ -1.75
NEK9-208ENST00000555961 WASF2Q9Y6W5 498 aa4.13□□□□□ -1.75
NEK9-208ENST00000555961 ALDH1A1P00352 501 aa4.12□□□□□ -1.75
NEK9-208ENST00000555961 MTMR2Q13614 643 aa4.12□□□□□ -1.75
NEK9-208ENST00000555961 PTPRNQ16849 979 aa4.12□□□□□ -1.75
NEK9-208ENST00000555961 ZC3H15Q8WU90 426 aaKnown RBP4.12□□□□□ -1.75
NEK9-208ENST00000555961 KIFC2Q96AC6 838 aa4.12□□□□□ -1.75
NEK9-208ENST00000555961 BEGAINQ9BUH8 593 aa4.12□□□□□ -1.75
NEK9-208ENST00000555961 KRTAP4-9Q9BYQ8 210 aa4.12□□□□□ -1.75
NEK9-208ENST00000555961 GMPR2Q9P2T1 348 aaKnown RBP4.12□□□□□ -1.75
NEK9-208ENST00000555961 MOXD2PA6NHM9 499 aa4.11□□□□□ -1.75
NEK9-208ENST00000555961 J3QL48 77 aa4.11□□□□□ -1.75
NEK9-208ENST00000555961 NDUFV2P19404 249 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms