RNA–Protein interactions for RNA: ENST00000555961.1

NEK9-208, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 288 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-208ENST00000555961 POTEDQ86YR6 584 aa11.65□□□□□ -0.54
NEK9-208ENST00000555961 AEBP2Q6ZN18 517 aaPredicted RBP11.54□□□□□ -0.56
NEK9-208ENST00000555961 CHIC1Q5VXU3 224 aa10.9□□□□□ -0.66
NEK9-208ENST00000555961 SENP3Q9H4L4 574 aaPredicted RBP10.18□□□□□ -0.78
NEK9-208ENST00000555961 PHF23Q9BUL5 403 aaPredicted RBP9.82□□□□□ -0.84
NEK9-208ENST00000555961 MSH5O43196 834 aa9.6□□□□□ -0.87
NEK9-208ENST00000555961 FOXD1Q16676 465 aa9.59□□□□□ -0.87
NEK9-208ENST00000555961 CACNB1Q02641 598 aaPredicted RBP9.1□□□□□ -0.95
NEK9-208ENST00000555961 POTEHQ6S545 545 aa8.89□□□□□ -0.99
NEK9-208ENST00000555961 PIAS4Q8N2W9 510 aaPredicted RBP8.69□□□□□ -1.02
NEK9-208ENST00000555961 PLPPR3Q6T4P5 718 aa8.64□□□□□ -1.03
NEK9-208ENST00000555961 ADRA2BP18089 450 aa8.34□□□□□ -1.07
NEK9-208ENST00000555961 PPP6R1Q9UPN7 881 aa8.32□□□□□ -1.08
NEK9-208ENST00000555961 RNF39Q9H2S5 420 aa8□□□□□ -1.13
NEK9-208ENST00000555961 PLSCR2Q9NRY7 297 aa8□□□□□ -1.13
NEK9-208ENST00000555961 C1QBPQ07021 282 aaKnown RBP7.85□□□□□ -1.15
NEK9-208ENST00000555961 DMRT2Q9Y5R5 561 aa7.81□□□□□ -1.16
NEK9-208ENST00000555961 SCAF1Q9H7N4 1312 aaKnown RBP7.76□□□□□ -1.17
NEK9-208ENST00000555961 SP7Q8TDD2 431 aaPredicted RBP7.69□□□□□ -1.18
NEK9-208ENST00000555961 DCAF8L1A6NGE4 600 aa7.67□□□□□ -1.18
NEK9-208ENST00000555961 MAPK8IP2Q13387 824 aaPredicted RBP7.62□□□□□ -1.19
NEK9-208ENST00000555961 PPP4R3CPQ6ZMV5 832 aa7.56□□□□□ -1.2
NEK9-208ENST00000555961 CNKSR2Q8WXI2 1034 aa7.42□□□□□ -1.22
NEK9-208ENST00000555961 NCBP3Q53F19 620 aaKnown RBP7.37□□□□□ -1.23
NEK9-208ENST00000555961 HOXD11P31277 338 aaPredicted RBP7.34□□□□□ -1.23
NEK9-208ENST00000555961 RNF216Q9NWF9 866 aaPredicted RBP7.33□□□□□ -1.24
NEK9-208ENST00000555961 LHX8Q68G74 356 aa7.2□□□□□ -1.26
NEK9-208ENST00000555961 CHRDL2Q6WN34 429 aa7.18□□□□□ -1.26
NEK9-208ENST00000555961 NPM3O75607 178 aaKnown RBP7.15□□□□□ -1.26
NEK9-208ENST00000555961 DNAJC5BQ9UF47 199 aa7.1□□□□□ -1.27
NEK9-208ENST00000555961 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.08□□□□□ -1.28
NEK9-208ENST00000555961 KCNA4P22459 653 aa7.06□□□□□ -1.28
NEK9-208ENST00000555961 HAX1O00165 279 aa7.02□□□□□ -1.29
NEK9-208ENST00000555961 DSG3P32926 999 aa7.02□□□□□ -1.29
NEK9-208ENST00000555961 PCDH10Q9P2E7 1040 aa6.87□□□□□ -1.31
NEK9-208ENST00000555961 POTEMA6NI47 508 aa6.86□□□□□ -1.31
NEK9-208ENST00000555961 U3KPZ7 1027 aaPredicted RBP6.85□□□□□ -1.31
NEK9-208ENST00000555961 RBM42Q9BTD8 480 aaKnown RBP6.83□□□□□ -1.32
NEK9-208ENST00000555961 CAPN15O75808 1086 aa6.82□□□□□ -1.32
NEK9-208ENST00000555961 APLP2Q06481 763 aa6.82□□□□□ -1.32
NEK9-208ENST00000555961 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.79□□□□□ -1.32
NEK9-208ENST00000555961 HNRNPUL2Q1KMD3 747 aaKnown RBP6.79□□□□□ -1.32
NEK9-208ENST00000555961 POTEGQ6S5H5 508 aa6.79□□□□□ -1.32
NEK9-208ENST00000555961 SLC4A2P04920 1241 aa6.78□□□□□ -1.32
NEK9-208ENST00000555961 SLC4A1APQ9BWU0 796 aaKnown RBP6.74□□□□□ -1.33
NEK9-208ENST00000555961 SAMD1Q6SPF0 538 aaPredicted RBP6.73□□□□□ -1.33
NEK9-208ENST00000555961 SPINK5Q9NQ38 1064 aaPredicted RBP6.73□□□□□ -1.33
NEK9-208ENST00000555961 ZNF219Q9P2Y4 722 aaPredicted RBP6.7□□□□□ -1.34
NEK9-208ENST00000555961 TRHP20396 242 aaPredicted RBP6.69□□□□□ -1.34
NEK9-208ENST00000555961 EVX2Q03828 476 aa6.69□□□□□ -1.34
NEK9-208ENST00000555961 PIP4P2Q8N4L2 257 aa6.69□□□□□ -1.34
NEK9-208ENST00000555961 MYCNP04198 464 aaPredicted RBP6.68□□□□□ -1.34
NEK9-208ENST00000555961 FOXD4L1Q9NU39 408 aa6.62□□□□□ -1.35
NEK9-208ENST00000555961 ABCB7O75027 752 aa6.61□□□□□ -1.35
NEK9-208ENST00000555961 GABBR2O75899 941 aa6.54□□□□□ -1.36
NEK9-208ENST00000555961 POLA2Q14181 598 aa6.49□□□□□ -1.37
NEK9-208ENST00000555961 ZBTB12Q9Y330 459 aaPredicted RBP6.45□□□□□ -1.38
NEK9-208ENST00000555961 ZBTB22O15209 634 aa6.44□□□□□ -1.38
NEK9-208ENST00000555961 ATXN8OSP0DMR3 200 aa6.42□□□□□ -1.38
NEK9-208ENST00000555961 FXR2P51116 673 aaKnown RBP eCLIP6.41□□□□□ -1.38
NEK9-208ENST00000555961 ATF5Q9Y2D1 282 aaPredicted RBP6.41□□□□□ -1.38
NEK9-208ENST00000555961 OTUD5Q96G74 571 aa6.38□□□□□ -1.39
NEK9-208ENST00000555961 AKT1S1Q96B36 256 aa6.34□□□□□ -1.39
NEK9-208ENST00000555961 FBLN2P98095 1184 aa6.32□□□□□ -1.4
NEK9-208ENST00000555961 POTEIP0CG38 1075 aa6.31□□□□□ -1.4
NEK9-208ENST00000555961 OSCARQ8IYS5 282 aa6.28□□□□□ -1.4
NEK9-208ENST00000555961 C19orf67A6NJJ6 358 aa6.26□□□□□ -1.41
NEK9-208ENST00000555961 REM2Q8IYK8 340 aaPredicted RBP6.26□□□□□ -1.41
NEK9-208ENST00000555961 EHMT2Q96KQ7 1210 aa6.24□□□□□ -1.41
NEK9-208ENST00000555961 CSRNP3Q8WYN3 585 aa6.22□□□□□ -1.41
NEK9-208ENST00000555961 SPDYE2BA6NHP3 402 aa6.21□□□□□ -1.42
NEK9-208ENST00000555961 SPDYE6P0CI01 402 aa6.21□□□□□ -1.42
NEK9-208ENST00000555961 MMRN1Q13201 1228 aa6.21□□□□□ -1.42
NEK9-208ENST00000555961 SPDYE2Q495Y8 402 aa6.21□□□□□ -1.42
NEK9-208ENST00000555961 CDAN1Q8IWY9 1227 aa6.21□□□□□ -1.42
NEK9-208ENST00000555961 PITPNM1O00562 1244 aa6.19□□□□□ -1.42
NEK9-208ENST00000555961 FAM163AQ96GL9 167 aaPredicted RBP6.18□□□□□ -1.42
NEK9-208ENST00000555961 DCBLD2Q96PD2 775 aa6.15□□□□□ -1.42
NEK9-208ENST00000555961 LCE2DQ5TA82 110 aaPredicted RBP6.14□□□□□ -1.43
NEK9-208ENST00000555961 ZNF692Q9BU19 519 aaPredicted RBP6.14□□□□□ -1.43
NEK9-208ENST00000555961 MKRN4PQ13434 485 aaPredicted RBP6.13□□□□□ -1.43
NEK9-208ENST00000555961 SPDYE1Q8NFV5 336 aaPredicted RBP6.11□□□□□ -1.43
NEK9-208ENST00000555961 CLEC11AQ9Y240 323 aa6.09□□□□□ -1.43
NEK9-208ENST00000555961 POTEB2H3BUK9 544 aa6.08□□□□□ -1.44
NEK9-208ENST00000555961 SSUH2Q9Y2M2 353 aa6.08□□□□□ -1.44
NEK9-208ENST00000555961 PRKAR2AP13861 404 aaKnown RBP6.06□□□□□ -1.44
NEK9-208ENST00000555961 SPNS2Q8IVW8 549 aa6.06□□□□□ -1.44
NEK9-208ENST00000555961 PABPN1Q86U42 306 aaKnown RBP eCLIP6.03□□□□□ -1.44
NEK9-208ENST00000555961 CLCN6P51797 869 aa6.02□□□□□ -1.45
NEK9-208ENST00000555961 PRR29P0C7W0 189 aa6□□□□□ -1.45
NEK9-208ENST00000555961 SPDYE4A6NLX3 237 aa5.95□□□□□ -1.46
NEK9-208ENST00000555961 STAG3Q9UJ98 1225 aa5.94□□□□□ -1.46
NEK9-208ENST00000555961 MAMSTRQ6ZN01 415 aa5.93□□□□□ -1.46
NEK9-208ENST00000555961 CHADLQ6NUI6 762 aa5.91□□□□□ -1.46
NEK9-208ENST00000555961 FARP1Q9Y4F1 1045 aaPredicted RBP5.85□□□□□ -1.47
NEK9-208ENST00000555961 CD44P16070 742 aaKnown RBP5.82□□□□□ -1.48
NEK9-208ENST00000555961 SCUBE2Q9NQ36 999 aa5.8□□□□□ -1.48
NEK9-208ENST00000555961 PAK3O75914 559 aaPredicted RBP5.79□□□□□ -1.48
NEK9-208ENST00000555961 CREBZFQ9NS37 354 aa5.79□□□□□ -1.48
NEK9-208ENST00000555961 PLEKHG5O94827 1062 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms