RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 NSD3Q9BZ95 1437 aa22.44■■□□□ 1.18
SYNE3-202ENST00000553340 TCP11L2Q8N4U5 519 aa22.44■■□□□ 1.18
SYNE3-202ENST00000553340 RRP7AQ9Y3A4 280 aaKnown RBP22.44■■□□□ 1.18
SYNE3-202ENST00000553340 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.44■■□□□ 1.18
SYNE3-202ENST00000553340 PHF23Q9BUL5 403 aaPredicted RBP22.43■■□□□ 1.18
SYNE3-202ENST00000553340 INO80Q9ULG1 1556 aaPredicted RBP22.43■■□□□ 1.18
SYNE3-202ENST00000553340 SLKQ9H2G2 1235 aaPredicted RBP22.43■■□□□ 1.18
SYNE3-202ENST00000553340 PCDHB15Q9Y5E8 787 aa22.43■■□□□ 1.18
SYNE3-202ENST00000553340 IFT172Q9UG01 1749 aa22.42■■□□□ 1.18
SYNE3-202ENST00000553340 IQSEC2Q5JU85 1478 aa22.42■■□□□ 1.18
SYNE3-202ENST00000553340 TNNT2P45379 298 aaPredicted RBP22.41■■□□□ 1.18
SYNE3-202ENST00000553340 NRXN1Q9ULB1 1477 aa22.41■■□□□ 1.18
SYNE3-202ENST00000553340 RLBP1P12271 317 aa22.4■■□□□ 1.18
SYNE3-202ENST00000553340 PRKCSHP14314 528 aaPredicted RBP22.4■■□□□ 1.18
SYNE3-202ENST00000553340 RWDD1Q9H446 243 aaPredicted RBP22.4■■□□□ 1.18
SYNE3-202ENST00000553340 TBC1D32Q96NH3 1257 aa22.4■■□□□ 1.18
SYNE3-202ENST00000553340 POGKQ9P215 609 aa22.4■■□□□ 1.18
SYNE3-202ENST00000553340 PDZRN3Q9UPQ7 1066 aa22.4■■□□□ 1.18
SYNE3-202ENST00000553340 CCDC27Q2M243 656 aa22.39■■□□□ 1.18
SYNE3-202ENST00000553340 FAM43AQ8N2R8 423 aa22.39■■□□□ 1.18
SYNE3-202ENST00000553340 ANTXR1Q9H6X2 564 aa22.38■■□□□ 1.17
SYNE3-202ENST00000553340 MROH1Q8NDA8 1641 aa22.38■■□□□ 1.17
SYNE3-202ENST00000553340 SETBP1Q9Y6X0 1596 aa22.38■■□□□ 1.17
SYNE3-202ENST00000553340 CFAP53Q96M91 514 aa22.37■■□□□ 1.17
SYNE3-202ENST00000553340 SLC12A5Q9H2X9 1139 aa22.37■■□□□ 1.17
SYNE3-202ENST00000553340 EFCAB6Q5THR3 1501 aa22.37■■□□□ 1.17
SYNE3-202ENST00000553340 BCL2L13Q9BXK5 485 aa22.37■■□□□ 1.17
SYNE3-202ENST00000553340 TNNQ9UQP3 1299 aa22.37■■□□□ 1.17
SYNE3-202ENST00000553340 FANCAO15360 1455 aa22.37■■□□□ 1.17
SYNE3-202ENST00000553340 MYH16Q9H6N6 1097 aa22.36■■□□□ 1.17
SYNE3-202ENST00000553340 MROH2AA6NES4 1674 aa22.36■■□□□ 1.17
SYNE3-202ENST00000553340 MTHFSP49914 203 aa22.35■■□□□ 1.17
SYNE3-202ENST00000553340 TRAK1Q9UPV9 953 aa22.35■■□□□ 1.17
SYNE3-202ENST00000553340 NOS1P29475 1434 aa22.35■■□□□ 1.17
SYNE3-202ENST00000553340 NCBP3Q53F19 620 aaKnown RBP22.34■■□□□ 1.17
SYNE3-202ENST00000553340 ZNF518AQ6AHZ1 1483 aa22.34■■□□□ 1.17
SYNE3-202ENST00000553340 TBC1D2Q9BYX2 928 aa22.34■■□□□ 1.17
SYNE3-202ENST00000553340 ABCA9Q8IUA7 1624 aa22.33■■□□□ 1.16
SYNE3-202ENST00000553340 L1TD1Q5T7N2 865 aaKnown RBP22.33■■□□□ 1.16
SYNE3-202ENST00000553340 USP32Q8NFA0 1604 aa22.32■■□□□ 1.16
SYNE3-202ENST00000553340 MVPQ14764 893 aaKnown RBP22.32■■□□□ 1.16
SYNE3-202ENST00000553340 QRICH2Q9H0J4 1663 aa22.31■■□□□ 1.16
SYNE3-202ENST00000553340 ADGRL1O94910 1474 aa22.31■■□□□ 1.16
SYNE3-202ENST00000553340 ZC3H13Q5T200 1668 aaKnown RBP22.31■■□□□ 1.16
SYNE3-202ENST00000553340 CHGAP10645 457 aaKnown RBP22.3■■□□□ 1.16
SYNE3-202ENST00000553340 ADGRB3O60242 1522 aa22.3■■□□□ 1.16
SYNE3-202ENST00000553340 ZKSCAN2Q63HK3 967 aa22.3■■□□□ 1.16
SYNE3-202ENST00000553340 PPRC1Q5VV67 1664 aaKnown RBP22.3■■□□□ 1.16
SYNE3-202ENST00000553340 C14orf93Q9H972 538 aaKnown RBP22.29■■□□□ 1.16
SYNE3-202ENST00000553340 FTSJ3Q8IY81 847 aaKnown RBP22.29■■□□□ 1.16
SYNE3-202ENST00000553340 CT47B1P0C2W7 299 aaPredicted RBP22.27■■□□□ 1.16
SYNE3-202ENST00000553340 DZIP1LQ8IYY4 767 aaKnown RBP22.27■■□□□ 1.16
SYNE3-202ENST00000553340 LMTK2Q8IWU2 1503 aa22.27■■□□□ 1.16
SYNE3-202ENST00000553340 U2AF1L5P0DN76 240 aaPredicted RBP22.27■■□□□ 1.15
SYNE3-202ENST00000553340 U2AF1Q01081 240 aaKnown RBP eCLIP22.27■■□□□ 1.15
SYNE3-202ENST00000553340 RSPH6AQ9H0K4 717 aa22.25■■□□□ 1.15
SYNE3-202ENST00000553340 NSD2O96028 1365 aa22.25■■□□□ 1.15
SYNE3-202ENST00000553340 ADGRB1O14514 1584 aa22.25■■□□□ 1.15
SYNE3-202ENST00000553340 PPLO60437 1756 aa22.23■■□□□ 1.15
SYNE3-202ENST00000553340 TMEM132EQ6IEE7 984 aa22.23■■□□□ 1.15
SYNE3-202ENST00000553340 PUS7Q96PZ0 661 aaKnown RBP22.23■■□□□ 1.15
SYNE3-202ENST00000553340 C22orf23Q9BZE7 217 aa22.23■■□□□ 1.15
SYNE3-202ENST00000553340 ADGRB2O60241 1585 aa22.22■■□□□ 1.15
SYNE3-202ENST00000553340 ANKRD36BQ8N2N9 1353 aa22.22■■□□□ 1.15
SYNE3-202ENST00000553340 EIF5BO60841 1220 aaKnown RBP22.22■■□□□ 1.15
SYNE3-202ENST00000553340 SMC4Q9NTJ3 1288 aa22.21■■□□□ 1.15
SYNE3-202ENST00000553340 EVC2Q86UK5 1308 aa22.21■■□□□ 1.15
SYNE3-202ENST00000553340 MCM4P33991 863 aa22.21■■□□□ 1.15
SYNE3-202ENST00000553340 HDAC1Q13547 482 aaPredicted RBP22.21■■□□□ 1.15
SYNE3-202ENST00000553340 DDX19BQ9UMR2 479 aa22.2■■□□□ 1.14
SYNE3-202ENST00000553340 RPGRIP1LQ68CZ1 1315 aa22.2■■□□□ 1.14
SYNE3-202ENST00000553340 SPRYD3Q8NCJ5 442 aa22.2■■□□□ 1.14
SYNE3-202ENST00000553340 KIDINS220Q9ULH0 1771 aa22.2■■□□□ 1.14
SYNE3-202ENST00000553340 MFAP1P55081 439 aaKnown RBP22.19■■□□□ 1.14
SYNE3-202ENST00000553340 TSR2Q969E8 191 aaKnown RBP22.19■■□□□ 1.14
SYNE3-202ENST00000553340 CHMP5Q9NZZ3 219 aa22.19■■□□□ 1.14
SYNE3-202ENST00000553340 GOLGA6L3A6NEY3 463 aa22.18■■□□□ 1.14
SYNE3-202ENST00000553340 TRIM27P14373 513 aa22.18■■□□□ 1.14
SYNE3-202ENST00000553340 EXOSC9Q06265 439 aaKnown RBP22.17■■□□□ 1.14
SYNE3-202ENST00000553340 NPATQ14207 1427 aa22.17■■□□□ 1.14
SYNE3-202ENST00000553340 ITPRIPQ8IWB1 547 aa22.16■■□□□ 1.14
SYNE3-202ENST00000553340 ATF7IPQ6VMQ6 1270 aa22.15■■□□□ 1.14
SYNE3-202ENST00000553340 SSH1Q8WYL5 1049 aa22.15■■□□□ 1.14
SYNE3-202ENST00000553340 FSD2A1L4K1 749 aa22.14■■□□□ 1.14
SYNE3-202ENST00000553340 TMPOP42166 694 aaKnown RBP22.14■■□□□ 1.14
SYNE3-202ENST00000553340 SMC5Q8IY18 1101 aa22.14■■□□□ 1.13
SYNE3-202ENST00000553340 TULP4Q9NRJ4 1543 aa22.14■■□□□ 1.13
SYNE3-202ENST00000553340 CFAP65Q6ZU64 1925 aaKnown RBP22.13■■□□□ 1.13
SYNE3-202ENST00000553340 GLI2P10070 1586 aa22.13■■□□□ 1.13
SYNE3-202ENST00000553340 U2SURPO15042 1029 aaKnown RBP22.13■■□□□ 1.13
SYNE3-202ENST00000553340 XRCC6P12956 609 aaKnown RBP eCLIP22.13■■□□□ 1.13
SYNE3-202ENST00000553340 HSCBQ8IWL3 235 aa22.13■■□□□ 1.13
SYNE3-202ENST00000553340 PLEKHF1Q96S99 279 aa22.13■■□□□ 1.13
SYNE3-202ENST00000553340 RRAGDQ9NQL2 400 aaPredicted RBP22.13■■□□□ 1.13
SYNE3-202ENST00000553340 CD109Q6YHK3 1445 aa22.12■■□□□ 1.13
SYNE3-202ENST00000553340 TRIM35Q9UPQ4 493 aa22.11■■□□□ 1.13
SYNE3-202ENST00000553340 IL16Q14005 1332 aa22.11■■□□□ 1.13
SYNE3-202ENST00000553340 NOB1Q9ULX3 412 aaKnown RBP22.11■■□□□ 1.13
SYNE3-202ENST00000553340 ABCC11Q96J66 1382 aa22.11■■□□□ 1.13
SYNE3-202ENST00000553340 TRAK2O60296 914 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms