RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	GGNBP2	Q9H3C7	697 aa		13.97	□□□□□ -0.17
SYNE2-208	ENST00000553289	CCDC73	Q6ZRK6	1079 aa		13.97	□□□□□ -0.17
SYNE2-208	ENST00000553289	PSMA5	P28066	241 aa		13.97	□□□□□ -0.17
SYNE2-208	ENST00000553289	PPP2R1A	P30153	589 aa		13.97	□□□□□ -0.17
SYNE2-208	ENST00000553289	GAS2L2	Q8NHY3	880 aa		13.97	□□□□□ -0.17
SYNE2-208	ENST00000553289	SAFB	Q15424	915 aa	Known RBP eCLIP	13.96	□□□□□ -0.17
SYNE2-208	ENST00000553289	PANK1	Q8TE04	598 aa		13.96	□□□□□ -0.17
SYNE2-208	ENST00000553289	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.96	□□□□□ -0.17
SYNE2-208	ENST00000553289	KIAA1107	Q9UPP5	1409 aa		13.96	□□□□□ -0.17
SYNE2-208	ENST00000553289	VPS37C	A5D8V6	355 aa	Predicted RBP	13.96	□□□□□ -0.17
SYNE2-208	ENST00000553289	CT47B1	P0C2W7	299 aa	Predicted RBP	13.96	□□□□□ -0.17
SYNE2-208	ENST00000553289	MCM2	P49736	904 aa		13.96	□□□□□ -0.17
SYNE2-208	ENST00000553289	MTHFS	P49914	203 aa		13.96	□□□□□ -0.17
SYNE2-208	ENST00000553289	TCP11L2	Q8N4U5	519 aa		13.96	□□□□□ -0.17
SYNE2-208	ENST00000553289	ARAP1	Q96P48	1450 aa		13.96	□□□□□ -0.18
SYNE2-208	ENST00000553289	HMOX1	P09601	288 aa		13.96	□□□□□ -0.18
SYNE2-208	ENST00000553289	NCBP3	Q53F19	620 aa	Known RBP	13.96	□□□□□ -0.18
SYNE2-208	ENST00000553289	CYB5RL	Q6IPT4	315 aa		13.96	□□□□□ -0.18
SYNE2-208	ENST00000553289	NECTIN2	Q92692	538 aa		13.95	□□□□□ -0.18
SYNE2-208	ENST00000553289	CCDC30	Q5VVM6	783 aa		13.95	□□□□□ -0.18
SYNE2-208	ENST00000553289	VPS37D	Q86XT2	251 aa		13.95	□□□□□ -0.18
SYNE2-208	ENST00000553289	CNTROB	Q8N137	903 aa		13.95	□□□□□ -0.18
SYNE2-208	ENST00000553289	AQR	O60306	1485 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
SYNE2-208	ENST00000553289	MRE11	P49959	708 aa		13.95	□□□□□ -0.18
SYNE2-208	ENST00000553289	GCC1	Q96CN9	775 aa		13.95	□□□□□ -0.18
SYNE2-208	ENST00000553289	NFXL1	Q6ZNB6	911 aa		13.94	□□□□□ -0.18
SYNE2-208	ENST00000553289	TRIM34	Q9BYJ4	488 aa		13.94	□□□□□ -0.18
SYNE2-208	ENST00000553289	CABP2	Q9NPB3	220 aa		13.94	□□□□□ -0.18
SYNE2-208	ENST00000553289	RIC3	Q7Z5B4	369 aa		13.94	□□□□□ -0.18
SYNE2-208	ENST00000553289	CCAR2	Q8N163	923 aa	Known RBP	13.94	□□□□□ -0.18
SYNE2-208	ENST00000553289	RALYL	Q86SE5	291 aa	Known RBP	13.94	□□□□□ -0.18
SYNE2-208	ENST00000553289	HIP1	O00291	1037 aa		13.94	□□□□□ -0.18
SYNE2-208	ENST00000553289	LETM1	O95202	739 aa	Predicted RBP	13.94	□□□□□ -0.18
SYNE2-208	ENST00000553289	NFKBIB	Q15653	356 aa		13.93	□□□□□ -0.18
SYNE2-208	ENST00000553289	SET	Q01105	290 aa	Predicted RBP	13.93	□□□□□ -0.18
SYNE2-208	ENST00000553289	CFTR	P13569	1480 aa		13.93	□□□□□ -0.18
SYNE2-208	ENST00000553289	MBD3	O95983	291 aa		13.92	□□□□□ -0.18
SYNE2-208	ENST00000553289	CLASRP	Q8N2M8	674 aa	Known RBP	13.92	□□□□□ -0.18
SYNE2-208	ENST00000553289	NAT10	Q9H0A0	1025 aa	Known RBP	13.92	□□□□□ -0.18
SYNE2-208	ENST00000553289	C9orf84	Q5VXU9	1444 aa		13.92	□□□□□ -0.18
SYNE2-208	ENST00000553289	FAM43A	Q8N2R8	423 aa		13.92	□□□□□ -0.18
SYNE2-208	ENST00000553289	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.92	□□□□□ -0.18
SYNE2-208	ENST00000553289	FAM69C	Q0P6D2	419 aa		13.91	□□□□□ -0.18
SYNE2-208	ENST00000553289	HOMER1	Q86YM7	354 aa		13.91	□□□□□ -0.18
SYNE2-208	ENST00000553289	RABEP1	Q15276	862 aa		13.91	□□□□□ -0.18
SYNE2-208	ENST00000553289	ZNF592	Q92610	1267 aa		13.91	□□□□□ -0.18
SYNE2-208	ENST00000553289	TCEAL9	Q9UHQ7	104 aa		13.91	□□□□□ -0.18
SYNE2-208	ENST00000553289	ERC1	Q8IUD2	1116 aa		13.91	□□□□□ -0.18
SYNE2-208	ENST00000553289	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
SYNE2-208	ENST00000553289	CCDC39	Q9UFE4	941 aa		13.91	□□□□□ -0.18
SYNE2-208	ENST00000553289	TEX35	Q5T0J7	233 aa		13.9	□□□□□ -0.18
SYNE2-208	ENST00000553289	CFAP70	Q5T0N1	1121 aa		13.9	□□□□□ -0.18
SYNE2-208	ENST00000553289	ATF3	P18847	181 aa		13.9	□□□□□ -0.18
SYNE2-208	ENST00000553289	GPRASP1	Q5JY77	1395 aa		13.9	□□□□□ -0.18
SYNE2-208	ENST00000553289	HECW1	Q76N89	1606 aa		13.9	□□□□□ -0.18
SYNE2-208	ENST00000553289	PRX	Q9BXM0	1461 aa		13.9	□□□□□ -0.18
SYNE2-208	ENST00000553289	PDC	P20941	246 aa		13.9	□□□□□ -0.18
SYNE2-208	ENST00000553289	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.9	□□□□□ -0.18
SYNE2-208	ENST00000553289	XBP1	P17861	261 aa		13.9	□□□□□ -0.18
SYNE2-208	ENST00000553289	NLRP6	P59044	892 aa		13.9	□□□□□ -0.18
SYNE2-208	ENST00000553289	WDR63	Q8IWG1	891 aa		13.9	□□□□□ -0.18
SYNE2-208	ENST00000553289	BRMS1	Q9HCU9	246 aa		13.9	□□□□□ -0.18
SYNE2-208	ENST00000553289	TMEM132E	Q6IEE7	984 aa		13.89	□□□□□ -0.19
SYNE2-208	ENST00000553289	TRO	Q12816	1431 aa	Predicted RBP	13.89	□□□□□ -0.19
SYNE2-208	ENST00000553289	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.89	□□□□□ -0.19
SYNE2-208	ENST00000553289	ARGLU1	Q9NWB6	273 aa	Predicted RBP	13.89	□□□□□ -0.19
SYNE2-208	ENST00000553289	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.88	□□□□□ -0.19
SYNE2-208	ENST00000553289	PRKAR2B	P31323	418 aa		13.88	□□□□□ -0.19
SYNE2-208	ENST00000553289	TWISTNB	Q3B726	338 aa	Predicted RBP	13.88	□□□□□ -0.19
SYNE2-208	ENST00000553289	NEUROD6	Q96NK8	337 aa		13.88	□□□□□ -0.19
SYNE2-208	ENST00000553289	SYNJ1	O43426	1573 aa		13.88	□□□□□ -0.19
SYNE2-208	ENST00000553289	DHX16	O60231	1041 aa	Known RBP	13.88	□□□□□ -0.19
SYNE2-208	ENST00000553289	EXOSC9	Q06265	439 aa	Known RBP	13.88	□□□□□ -0.19
SYNE2-208	ENST00000553289	PDZRN3	Q9UPQ7	1066 aa		13.88	□□□□□ -0.19
SYNE2-208	ENST00000553289	ZNF692	Q9BU19	519 aa	Predicted RBP	13.88	□□□□□ -0.19
SYNE2-208	ENST00000553289	SMG6	Q86US8	1419 aa	Known RBP	13.88	□□□□□ -0.19
SYNE2-208	ENST00000553289	FSD1	Q9BTV5	496 aa		13.87	□□□□□ -0.19
SYNE2-208	ENST00000553289	NASP	P49321	788 aa	Predicted RBP	13.87	□□□□□ -0.19
SYNE2-208	ENST00000553289	WASHC4	Q2M389	1173 aa		13.87	□□□□□ -0.19
SYNE2-208	ENST00000553289	OLFM4	Q6UX06	510 aa		13.87	□□□□□ -0.19
SYNE2-208	ENST00000553289	ACBD3	Q9H3P7	528 aa		13.87	□□□□□ -0.19
SYNE2-208	ENST00000553289	NLRP2	Q9NX02	1062 aa		13.87	□□□□□ -0.19
SYNE2-208	ENST00000553289	TIAM1	Q13009	1591 aa		13.87	□□□□□ -0.19
SYNE2-208	ENST00000553289	PDE4C	Q08493	712 aa		13.87	□□□□□ -0.19
SYNE2-208	ENST00000553289	CDCA7L	Q96GN5	454 aa		13.87	□□□□□ -0.19
SYNE2-208	ENST00000553289	TOP2B	Q02880	1626 aa		13.87	□□□□□ -0.19
SYNE2-208	ENST00000553289	RPGRIP1L	Q68CZ1	1315 aa		13.86	□□□□□ -0.19
SYNE2-208	ENST00000553289	GNAI2	P04899	355 aa		13.86	□□□□□ -0.19
SYNE2-208	ENST00000553289	PNISR	Q8TF01	805 aa	Known RBP	13.86	□□□□□ -0.19
SYNE2-208	ENST00000553289	IFT140	Q96RY7	1462 aa		13.86	□□□□□ -0.19
SYNE2-208	ENST00000553289	SURF6	O75683	361 aa	Known RBP	13.86	□□□□□ -0.19
SYNE2-208	ENST00000553289	MTERF4	Q7Z6M4	381 aa	Known RBP	13.86	□□□□□ -0.19
SYNE2-208	ENST00000553289	PRG4	Q92954	1404 aa	Predicted RBP	13.86	□□□□□ -0.19
SYNE2-208	ENST00000553289	CCT4	P50991	539 aa	Known RBP	13.86	□□□□□ -0.19
SYNE2-208	ENST00000553289	SART3	Q15020	963 aa	Known RBP	13.86	□□□□□ -0.19
SYNE2-208	ENST00000553289	AFAP1	Q8N556	730 aa		13.86	□□□□□ -0.19
SYNE2-208	ENST00000553289	SYTL4	Q96C24	671 aa	Predicted RBP	13.86	□□□□□ -0.19
SYNE2-208	ENST00000553289	ZNF428	Q96B54	188 aa		13.86	□□□□□ -0.19
SYNE2-208	ENST00000553289	CWC22	Q9HCG8	908 aa	Known RBP	13.86	□□□□□ -0.19
SYNE2-208	ENST00000553289	SLC52A1	Q9NWF4	448 aa		13.85	□□□□□ -0.19

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