RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 HLA-CQ95604 372 aa11□□□□□ -0.65
LIMA1-210ENST00000552045 SLC4A5Q9BY07 1137 aa11□□□□□ -0.65
LIMA1-210ENST00000552045 AXIN2Q9Y2T1 843 aa11□□□□□ -0.65
LIMA1-210ENST00000552045 HMX1Q9NP08 348 aaPredicted RBP10.99□□□□□ -0.65
LIMA1-210ENST00000552045 RABGEF1Q9UJ41 708 aa10.99□□□□□ -0.65
LIMA1-210ENST00000552045 WASHC4Q2M389 1173 aa10.98□□□□□ -0.65
LIMA1-210ENST00000552045 HELBQ8NG08 1087 aaPredicted RBP10.98□□□□□ -0.65
LIMA1-210ENST00000552045 TRIM34Q9BYJ4 488 aa10.98□□□□□ -0.65
LIMA1-210ENST00000552045 CCDC9Q9Y3X0 531 aaKnown RBP10.98□□□□□ -0.65
LIMA1-210ENST00000552045 RANGAP1P46060 587 aaPredicted RBP10.97□□□□□ -0.65
LIMA1-210ENST00000552045 HDGFP51858 240 aaKnown RBP10.97□□□□□ -0.65
LIMA1-210ENST00000552045 DMRTA1Q5VZB9 504 aa10.97□□□□□ -0.65
LIMA1-210ENST00000552045 SEPT9Q9UHD8 586 aaPredicted RBP10.97□□□□□ -0.65
LIMA1-210ENST00000552045 ACIN1Q9UKV3 1341 aaKnown RBP10.96□□□□□ -0.65
LIMA1-210ENST00000552045 GPR37L1O60883 481 aa10.96□□□□□ -0.65
LIMA1-210ENST00000552045 HDGFL1Q5TGJ6 251 aa10.96□□□□□ -0.65
LIMA1-210ENST00000552045 SLC4A3P48751 1232 aa10.95□□□□□ -0.66
LIMA1-210ENST00000552045 GRIPAP1Q4V328 841 aa10.95□□□□□ -0.66
LIMA1-210ENST00000552045 POTEGQ6S5H5 508 aa10.95□□□□□ -0.66
LIMA1-210ENST00000552045 ADAMTS19Q8TE59 1207 aa10.95□□□□□ -0.66
LIMA1-210ENST00000552045 CFAP99D6REC4 459 aa10.94□□□□□ -0.66
LIMA1-210ENST00000552045 AEBP1Q8IUX7 1158 aa10.94□□□□□ -0.66
LIMA1-210ENST00000552045 LRRN4Q8WUT4 740 aa10.94□□□□□ -0.66
LIMA1-210ENST00000552045 TSC1Q92574 1164 aa10.94□□□□□ -0.66
LIMA1-210ENST00000552045 POTEMA6NI47 508 aa10.93□□□□□ -0.66
LIMA1-210ENST00000552045 TK2O00142 265 aa10.93□□□□□ -0.66
LIMA1-210ENST00000552045 LSM11P83369 360 aaKnown RBP eCLIP10.93□□□□□ -0.66
LIMA1-210ENST00000552045 FUT2Q10981 343 aa10.93□□□□□ -0.66
LIMA1-210ENST00000552045 FAM98CQ17RN3 349 aaKnown RBP10.93□□□□□ -0.66
LIMA1-210ENST00000552045 NPM2Q86SE8 214 aaKnown RBP10.93□□□□□ -0.66
LIMA1-210ENST00000552045 SLF2Q8IX21 1173 aa10.93□□□□□ -0.66
LIMA1-210ENST00000552045 VPS9D1Q9Y2B5 631 aa10.93□□□□□ -0.66
LIMA1-210ENST00000552045 C6orf229H3BNL8 230 aa10.92□□□□□ -0.66
LIMA1-210ENST00000552045 PBXIP1Q96AQ6 731 aa10.91□□□□□ -0.66
LIMA1-210ENST00000552045 CFHP08603 1231 aa10.9□□□□□ -0.66
LIMA1-210ENST00000552045 PDE4CQ08493 712 aa10.9□□□□□ -0.66
LIMA1-210ENST00000552045 VAC14Q08AM6 782 aa10.9□□□□□ -0.66
LIMA1-210ENST00000552045 ATP6V1AP38606 617 aa10.89□□□□□ -0.67
LIMA1-210ENST00000552045 SAMD7Q7Z3H4 446 aa10.89□□□□□ -0.67
LIMA1-210ENST00000552045 EPS8L1Q8TE68 723 aa10.89□□□□□ -0.67
LIMA1-210ENST00000552045 CFAP70Q5T0N1 1121 aa10.88□□□□□ -0.67
LIMA1-210ENST00000552045 ADGRD1Q6QNK2 874 aa10.88□□□□□ -0.67
LIMA1-210ENST00000552045 KRTAP3-3Q9BYR6 98 aa10.88□□□□□ -0.67
LIMA1-210ENST00000552045 KRTAP3-2Q9BYR7 98 aa10.88□□□□□ -0.67
LIMA1-210ENST00000552045 ALG2Q9H553 416 aa10.88□□□□□ -0.67
LIMA1-210ENST00000552045 RFX1P22670 979 aa10.87□□□□□ -0.67
LIMA1-210ENST00000552045 LAPTM4BQ86VI4 370 aa10.87□□□□□ -0.67
LIMA1-210ENST00000552045 PRR7Q8TB68 274 aa10.87□□□□□ -0.67
LIMA1-210ENST00000552045 SYMPKQ92797 1274 aaKnown RBP10.87□□□□□ -0.67
LIMA1-210ENST00000552045 PPP1R12CQ9BZL4 782 aa10.87□□□□□ -0.67
LIMA1-210ENST00000552045 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.86□□□□□ -0.67
LIMA1-210ENST00000552045 BHMG1C9JSJ3 638 aaPredicted RBP10.85□□□□□ -0.67
LIMA1-210ENST00000552045 SRPK2P78362 688 aaKnown RBP10.85□□□□□ -0.67
LIMA1-210ENST00000552045 CDAN1Q8IWY9 1227 aa10.85□□□□□ -0.67
LIMA1-210ENST00000552045 NBPF3Q9H094 633 aa10.85□□□□□ -0.67
LIMA1-210ENST00000552045 NR6A1Q15406 480 aa10.84□□□□□ -0.67
LIMA1-210ENST00000552045 ANKRD13DQ6ZTN6 518 aa10.84□□□□□ -0.67
LIMA1-210ENST00000552045 HRO43593 1189 aa10.83□□□□□ -0.68
LIMA1-210ENST00000552045 RNF40O75150 1001 aa10.83□□□□□ -0.68
LIMA1-210ENST00000552045 SOX11P35716 441 aa10.83□□□□□ -0.68
LIMA1-210ENST00000552045 KMT5BQ4FZB7 885 aa10.83□□□□□ -0.68
LIMA1-210ENST00000552045 PALM3A6NDB9 673 aaPredicted RBP10.82□□□□□ -0.68
LIMA1-210ENST00000552045 PER1O15534 1290 aaPredicted RBP10.82□□□□□ -0.68
LIMA1-210ENST00000552045 RETREG3Q86VR2 466 aa10.82□□□□□ -0.68
LIMA1-210ENST00000552045 MORN1Q5T089 497 aa10.81□□□□□ -0.68
LIMA1-210ENST00000552045 USTQ9Y2C2 406 aa10.81□□□□□ -0.68
LIMA1-210ENST00000552045 DESI1Q6ICB0 168 aa10.8□□□□□ -0.68
LIMA1-210ENST00000552045 ZFRQ96KR1 1074 aaKnown RBP10.8□□□□□ -0.68
LIMA1-210ENST00000552045 UCN2Q96RP3 112 aa10.8□□□□□ -0.68
LIMA1-210ENST00000552045 CSB-PGBD3P0DP91 1061 aa10.79□□□□□ -0.68
LIMA1-210ENST00000552045 LMOD1P29536 600 aaPredicted RBP10.79□□□□□ -0.68
LIMA1-210ENST00000552045 Q3C1V9 767 aa10.79□□□□□ -0.68
LIMA1-210ENST00000552045 GZF1Q9H116 711 aaPredicted RBP10.79□□□□□ -0.68
LIMA1-210ENST00000552045 TFIP11Q9UBB9 837 aaKnown RBP10.79□□□□□ -0.68
LIMA1-210ENST00000552045 SLC27A5Q9Y2P5 690 aa10.79□□□□□ -0.68
LIMA1-210ENST00000552045 ACTN4O43707 911 aaKnown RBP10.78□□□□□ -0.68
LIMA1-210ENST00000552045 SEMA3FQ13275 785 aa10.78□□□□□ -0.68
LIMA1-210ENST00000552045 PUS10Q3MIT2 529 aaKnown RBP10.78□□□□□ -0.68
LIMA1-210ENST00000552045 MRPL50Q8N5N7 158 aaKnown RBP10.78□□□□□ -0.68
LIMA1-210ENST00000552045 PNMA1Q8ND90 353 aa10.78□□□□□ -0.68
LIMA1-210ENST00000552045 PATL2C9JE40 543 aaKnown RBP10.77□□□□□ -0.69
LIMA1-210ENST00000552045 PCDH10Q9P2E7 1040 aa10.77□□□□□ -0.69
LIMA1-210ENST00000552045 TMCO4Q5TGY1 634 aa10.76□□□□□ -0.69
LIMA1-210ENST00000552045 LYPD8Q6UX82 237 aa10.76□□□□□ -0.69
LIMA1-210ENST00000552045 STAC3Q96MF2 364 aa10.76□□□□□ -0.69
LIMA1-210ENST00000552045 BRD1O95696 1058 aa10.75□□□□□ -0.69
LIMA1-210ENST00000552045 EIF4G2P78344 907 aaKnown RBP eCLIP10.74□□□□□ -0.69
LIMA1-210ENST00000552045 LRCH3Q96II8 777 aa10.74□□□□□ -0.69
LIMA1-210ENST00000552045 MAFBQ9Y5Q3 323 aaPredicted RBP10.74□□□□□ -0.69
LIMA1-210ENST00000552045 KCNA1Q09470 495 aa10.73□□□□□ -0.69
LIMA1-210ENST00000552045 PRR14Q9BWN1 585 aa10.73□□□□□ -0.69
LIMA1-210ENST00000552045 ATG7O95352 703 aa10.72□□□□□ -0.69
LIMA1-210ENST00000552045 NR1H3Q13133 447 aa10.72□□□□□ -0.69
LIMA1-210ENST00000552045 TBC1D9Q6ZT07 1266 aa10.72□□□□□ -0.69
LIMA1-210ENST00000552045 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-210ENST00000552045 BLOC1S3Q6QNY0 202 aa10.71□□□□□ -0.69
LIMA1-210ENST00000552045 RNF19BQ6ZMZ0 732 aa10.71□□□□□ -0.69
LIMA1-210ENST00000552045 USB1Q9BQ65 265 aaKnown RBP10.71□□□□□ -0.69
LIMA1-210ENST00000552045 CARNS1A5YM72 827 aa10.7□□□□□ -0.7
LIMA1-210ENST00000552045 GOLGA8CPA6NN73 597 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms