RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 BAZ1AQ9NRL2 1556 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-208ENST00000551691 FAM160A2Q8N612 972 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-208ENST00000551691 ATP6V1AP38606 617 aa7.11□□□□□ -1.27
LIMA1-208ENST00000551691 GCGRP47871 477 aa7.11□□□□□ -1.27
LIMA1-208ENST00000551691 PRR20EP86478 221 aa7.11□□□□□ -1.27
LIMA1-208ENST00000551691 PRR20CP86479 221 aa7.11□□□□□ -1.27
LIMA1-208ENST00000551691 PRR20DP86480 221 aa7.11□□□□□ -1.27
LIMA1-208ENST00000551691 PRR20BP86481 221 aa7.11□□□□□ -1.27
LIMA1-208ENST00000551691 PRR20AP86496 221 aa7.11□□□□□ -1.27
LIMA1-208ENST00000551691 RNF19BQ6ZMZ0 732 aa7.11□□□□□ -1.27
LIMA1-208ENST00000551691 ZNF775Q96BV0 537 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-208ENST00000551691 THAP11Q96EK4 314 aa7.11□□□□□ -1.27
LIMA1-208ENST00000551691 KIF21AQ7Z4S6 1674 aa7.1□□□□□ -1.27
LIMA1-208ENST00000551691 DGAT1O75907 488 aa7.1□□□□□ -1.27
LIMA1-208ENST00000551691 PKD2L1Q9P0L9 805 aa7.1□□□□□ -1.27
LIMA1-208ENST00000551691 TIMELESSQ9UNS1 1208 aa7.1□□□□□ -1.27
LIMA1-208ENST00000551691 ATAD2BQ9ULI0 1458 aa7.1□□□□□ -1.27
LIMA1-208ENST00000551691 HLA-CQ95604 372 aa7.09□□□□□ -1.27
LIMA1-208ENST00000551691 ZCCHC6Q5VYS8 1495 aaKnown RBP7.09□□□□□ -1.27
LIMA1-208ENST00000551691 FMNL1O95466 1100 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-208ENST00000551691 DCAF1Q9Y4B6 1507 aa7.07□□□□□ -1.28
LIMA1-208ENST00000551691 SULF1Q8IWU6 871 aa7.07□□□□□ -1.28
LIMA1-208ENST00000551691 ARHGEF11O15085 1522 aa7.06□□□□□ -1.28
LIMA1-208ENST00000551691 MDM2Q00987 491 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-208ENST00000551691 TMEM132AQ24JP5 1023 aa7.06□□□□□ -1.28
LIMA1-208ENST00000551691 BRICD5Q6PL45 260 aa7.06□□□□□ -1.28
LIMA1-208ENST00000551691 DACH1Q9UI36 760 aa7.06□□□□□ -1.28
LIMA1-208ENST00000551691 PDS5BQ9NTI5 1447 aa7.05□□□□□ -1.28
LIMA1-208ENST00000551691 AAASQ9NRG9 546 aa7.05□□□□□ -1.28
LIMA1-208ENST00000551691 GUCA2AQ02747 115 aa7.04□□□□□ -1.28
LIMA1-208ENST00000551691 C14orf37Q86TY3 774 aa7.04□□□□□ -1.28
LIMA1-208ENST00000551691 CD46P15529 392 aa7.03□□□□□ -1.28
LIMA1-208ENST00000551691 RPIAP49247 311 aa7.03□□□□□ -1.28
LIMA1-208ENST00000551691 MAP2K5Q13163 448 aa7.03□□□□□ -1.28
LIMA1-208ENST00000551691 CYP4X1Q8N118 509 aa7.03□□□□□ -1.28
LIMA1-208ENST00000551691 CD2BP2O95400 341 aaKnown RBP7.02□□□□□ -1.29
LIMA1-208ENST00000551691 LAMC3Q9Y6N6 1575 aa7.01□□□□□ -1.29
LIMA1-208ENST00000551691 MRC2Q9UBG0 1479 aa7.01□□□□□ -1.29
LIMA1-208ENST00000551691 IRF6O14896 467 aa7.01□□□□□ -1.29
LIMA1-208ENST00000551691 ZBTB24O43167 697 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-208ENST00000551691 KDM4AO75164 1064 aa7.01□□□□□ -1.29
LIMA1-208ENST00000551691 MSS51Q4VC12 460 aa7.01□□□□□ -1.29
LIMA1-208ENST00000551691 CCDC102AQ96A19 550 aa7.01□□□□□ -1.29
LIMA1-208ENST00000551691 TOR4AQ9NXH8 423 aa7.01□□□□□ -1.29
LIMA1-208ENST00000551691 TTC24A2A3L6 582 aaPredicted RBP7□□□□□ -1.29
LIMA1-208ENST00000551691 GRIPAP1Q4V328 841 aa7□□□□□ -1.29
LIMA1-208ENST00000551691 LMOD2Q6P5Q4 547 aa7□□□□□ -1.29
LIMA1-208ENST00000551691 CCDC24Q8N4L8 307 aa7□□□□□ -1.29
LIMA1-208ENST00000551691 SYMPKQ92797 1274 aaKnown RBP7□□□□□ -1.29
LIMA1-208ENST00000551691 ARXQ96QS3 562 aa7□□□□□ -1.29
LIMA1-208ENST00000551691 SALL2Q9Y467 1007 aaPredicted RBP7□□□□□ -1.29
LIMA1-208ENST00000551691 TRIM32Q13049 653 aa6.99□□□□□ -1.29
LIMA1-208ENST00000551691 GMPR2Q9P2T1 348 aaKnown RBP6.99□□□□□ -1.29
LIMA1-208ENST00000551691 ARAP1Q96P48 1450 aa6.98□□□□□ -1.29
LIMA1-208ENST00000551691 WDR62O43379 1518 aa6.98□□□□□ -1.29
LIMA1-208ENST00000551691 USB1Q9BQ65 265 aaKnown RBP6.98□□□□□ -1.29
LIMA1-208ENST00000551691 J3QL48 77 aa6.97□□□□□ -1.29
LIMA1-208ENST00000551691 AXIN1O15169 862 aa6.97□□□□□ -1.29
LIMA1-208ENST00000551691 HOXA2O43364 376 aa6.97□□□□□ -1.29
LIMA1-208ENST00000551691 Q3C1V9 767 aa6.97□□□□□ -1.29
LIMA1-208ENST00000551691 MRGPRX2Q96LB1 330 aa6.97□□□□□ -1.29
LIMA1-208ENST00000551691 BAZ1BQ9UIG0 1483 aaKnown RBP6.97□□□□□ -1.29
LIMA1-208ENST00000551691 HMGXB3Q12766 1538 aa6.96□□□□□ -1.29
LIMA1-208ENST00000551691 MMP16P51512 607 aa6.96□□□□□ -1.3
LIMA1-208ENST00000551691 MINK1Q8N4C8 1332 aaPredicted RBP6.96□□□□□ -1.3
LIMA1-208ENST00000551691 CADPSQ9ULU8 1353 aa6.95□□□□□ -1.3
LIMA1-208ENST00000551691 DXOO77932 396 aaKnown RBP6.95□□□□□ -1.3
LIMA1-208ENST00000551691 SMPD1P17405 629 aa6.95□□□□□ -1.3
LIMA1-208ENST00000551691 REPIN1Q9BWE0 567 aaKnown RBP6.95□□□□□ -1.3
LIMA1-208ENST00000551691 C11orf95C9JLR9 678 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-208ENST00000551691 WNT7AO00755 349 aa6.94□□□□□ -1.3
LIMA1-208ENST00000551691 AVPP01185 164 aa6.94□□□□□ -1.3
LIMA1-208ENST00000551691 FAM217BQ9NTX9 383 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-208ENST00000551691 SKOR1P84550 965 aa6.93□□□□□ -1.3
LIMA1-208ENST00000551691 CRIPAKQ8N1N5 446 aa6.93□□□□□ -1.3
LIMA1-208ENST00000551691 KRI1Q8N9T8 703 aaKnown RBP6.93□□□□□ -1.3
LIMA1-208ENST00000551691 HPS1Q92902 700 aa6.93□□□□□ -1.3
LIMA1-208ENST00000551691 GPCPD1Q9NPB8 672 aa6.93□□□□□ -1.3
LIMA1-208ENST00000551691 USP46P62068 366 aa6.92□□□□□ -1.3
LIMA1-208ENST00000551691 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.92□□□□□ -1.3
LIMA1-208ENST00000551691 NUTM1Q86Y26 1132 aa6.92□□□□□ -1.3
LIMA1-208ENST00000551691 HOMEZQ8IX15 550 aa6.92□□□□□ -1.3
LIMA1-208ENST00000551691 SNIP1Q8TAD8 396 aaKnown RBP6.92□□□□□ -1.3
LIMA1-208ENST00000551691 ZNF608Q9ULD9 1512 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-208ENST00000551691 CLCN1P35523 988 aa6.91□□□□□ -1.3
LIMA1-208ENST00000551691 NEUROD2Q15784 382 aa6.91□□□□□ -1.3
LIMA1-208ENST00000551691 RC3H1Q5TC82 1133 aaKnown RBP6.91□□□□□ -1.3
LIMA1-208ENST00000551691 PTCRAQ6ISU1 281 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-208ENST00000551691 PCDHGC3Q9UN70 934 aa6.91□□□□□ -1.3
LIMA1-208ENST00000551691 SMARCA4P51532 1647 aa6.9□□□□□ -1.3
LIMA1-208ENST00000551691 SNRPBP14678 240 aaKnown RBP6.9□□□□□ -1.3
LIMA1-208ENST00000551691 JUNDP17535 347 aa6.9□□□□□ -1.3
LIMA1-208ENST00000551691 NDUFV2P19404 249 aa6.9□□□□□ -1.3
LIMA1-208ENST00000551691 TREML4Q6UXN2 200 aa6.9□□□□□ -1.3
LIMA1-208ENST00000551691 C6orf229H3BNL8 230 aa6.89□□□□□ -1.31
LIMA1-208ENST00000551691 FDX1P10109 184 aa6.89□□□□□ -1.31
LIMA1-208ENST00000551691 CTC1Q2NKJ3 1217 aa6.89□□□□□ -1.31
LIMA1-208ENST00000551691 ATP13A2Q9NQ11 1180 aa6.89□□□□□ -1.31
LIMA1-208ENST00000551691 CEP164Q9UPV0 1460 aa6.88□□□□□ -1.31
LIMA1-208ENST00000551691 ALDH1A1P00352 501 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms