RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 CCDC88BA6NC98 1476 aa10.05□□□□□ -0.8
SCAF11-213ENST00000550629 PUS10Q3MIT2 529 aaKnown RBP10.04□□□□□ -0.8
SCAF11-213ENST00000550629 CLCN1P35523 988 aa10.03□□□□□ -0.8
SCAF11-213ENST00000550629 GCGRP47871 477 aa10.03□□□□□ -0.8
SCAF11-213ENST00000550629 PRR20EP86478 221 aa10.03□□□□□ -0.8
SCAF11-213ENST00000550629 PRR20CP86479 221 aa10.03□□□□□ -0.8
SCAF11-213ENST00000550629 PRR20DP86480 221 aa10.03□□□□□ -0.8
SCAF11-213ENST00000550629 PRR20BP86481 221 aa10.03□□□□□ -0.8
SCAF11-213ENST00000550629 PRR20AP86496 221 aa10.03□□□□□ -0.8
SCAF11-213ENST00000550629 LIAT1Q6ZQX7 453 aa10.03□□□□□ -0.8
SCAF11-213ENST00000550629 REPIN1Q9BWE0 567 aaKnown RBP10.03□□□□□ -0.8
SCAF11-213ENST00000550629 GPCPD1Q9NPB8 672 aa10.03□□□□□ -0.8
SCAF11-213ENST00000550629 CD46P15529 392 aa10.02□□□□□ -0.81
SCAF11-213ENST00000550629 LCE2AQ5TA79 106 aaPredicted RBP10.02□□□□□ -0.81
SCAF11-213ENST00000550629 SCUBE3Q8IX30 993 aa10.02□□□□□ -0.81
SCAF11-213ENST00000550629 SPSB2Q99619 263 aa10.02□□□□□ -0.81
SCAF11-213ENST00000550629 TNFRSF10AO00220 468 aa10.01□□□□□ -0.81
SCAF11-213ENST00000550629 FAM187AA6NFU0 413 aa10□□□□□ -0.81
SCAF11-213ENST00000550629 DGAT1O75907 488 aa10□□□□□ -0.81
SCAF11-213ENST00000550629 FUT2Q10981 343 aa10□□□□□ -0.81
SCAF11-213ENST00000550629 AMHR2Q16671 573 aa10□□□□□ -0.81
SCAF11-213ENST00000550629 AK7Q96M32 723 aa10□□□□□ -0.81
SCAF11-213ENST00000550629 FAM217BQ9NTX9 383 aaPredicted RBP10□□□□□ -0.81
SCAF11-213ENST00000550629 TRIM66O15016 1216 aa9.99□□□□□ -0.81
SCAF11-213ENST00000550629 TREML4Q6UXN2 200 aa9.99□□□□□ -0.81
SCAF11-213ENST00000550629 SLC24A3Q9HC58 644 aa9.99□□□□□ -0.81
SCAF11-213ENST00000550629 LAMC3Q9Y6N6 1575 aa9.99□□□□□ -0.81
SCAF11-213ENST00000550629 CADPSQ9ULU8 1353 aa9.99□□□□□ -0.81
SCAF11-213ENST00000550629 CFTRP13569 1480 aa9.98□□□□□ -0.81
SCAF11-213ENST00000550629 ATP6V1AP38606 617 aa9.97□□□□□ -0.81
SCAF11-213ENST00000550629 TTLL12Q14166 644 aaPredicted RBP9.97□□□□□ -0.81
SCAF11-213ENST00000550629 PLA2G2CQ5R387 149 aa9.97□□□□□ -0.81
SCAF11-213ENST00000550629 MYT1Q01538 1121 aa9.96□□□□□ -0.82
SCAF11-213ENST00000550629 MORN1Q5T089 497 aa9.96□□□□□ -0.82
SCAF11-213ENST00000550629 GDF9O60383 454 aa9.95□□□□□ -0.82
SCAF11-213ENST00000550629 SSTR3P32745 418 aaPredicted RBP9.95□□□□□ -0.82
SCAF11-213ENST00000550629 KDM4AO75164 1064 aa9.94□□□□□ -0.82
SCAF11-213ENST00000550629 FOXC1Q12948 553 aa9.94□□□□□ -0.82
SCAF11-213ENST00000550629 GIGYF2Q6Y7W6 1299 aaKnown RBP9.94□□□□□ -0.82
SCAF11-213ENST00000550629 PARP9Q8IXQ6 854 aa9.94□□□□□ -0.82
SCAF11-213ENST00000550629 FMNL1O95466 1100 aaPredicted RBP9.93□□□□□ -0.82
SCAF11-213ENST00000550629 SLC27A5Q9Y2P5 690 aa9.93□□□□□ -0.82
SCAF11-213ENST00000550629 FCF1Q9Y324 198 aaKnown RBP9.93□□□□□ -0.82
SCAF11-213ENST00000550629 PDS5BQ9NTI5 1447 aa9.91□□□□□ -0.82
SCAF11-213ENST00000550629 RPIAP49247 311 aa9.91□□□□□ -0.82
SCAF11-213ENST00000550629 GRIPAP1Q4V328 841 aa9.91□□□□□ -0.82
SCAF11-213ENST00000550629 NESP48681 1621 aa9.91□□□□□ -0.82
SCAF11-213ENST00000550629 PDE4DQ08499 809 aa9.9□□□□□ -0.82
SCAF11-213ENST00000550629 THAP11Q96EK4 314 aa9.9□□□□□ -0.82
SCAF11-213ENST00000550629 USP46P62068 366 aa9.89□□□□□ -0.83
SCAF11-213ENST00000550629 HLA-CQ95604 372 aa9.89□□□□□ -0.83
SCAF11-213ENST00000550629 PRDM9Q9NQV7 894 aa9.89□□□□□ -0.83
SCAF11-213ENST00000550629 PKD2L1Q9P0L9 805 aa9.89□□□□□ -0.83
SCAF11-213ENST00000550629 PRDM2Q13029 1718 aa9.88□□□□□ -0.83
SCAF11-213ENST00000550629 HOXA2O43364 376 aa9.88□□□□□ -0.83
SCAF11-213ENST00000550629 CD2BP2O95400 341 aaKnown RBP9.88□□□□□ -0.83
SCAF11-213ENST00000550629 MS4A1P11836 297 aa9.88□□□□□ -0.83
SCAF11-213ENST00000550629 NUTM1Q86Y26 1132 aa9.88□□□□□ -0.83
SCAF11-213ENST00000550629 ST8SIA5O15466 376 aa9.87□□□□□ -0.83
SCAF11-213ENST00000550629 FAM160A2Q8N612 972 aaPredicted RBP9.87□□□□□ -0.83
SCAF11-213ENST00000550629 FANCD2Q9BXW9 1451 aa9.86□□□□□ -0.83
SCAF11-213ENST00000550629 GUCA2AQ02747 115 aa9.86□□□□□ -0.83
SCAF11-213ENST00000550629 BRICD5Q6PL45 260 aa9.86□□□□□ -0.83
SCAF11-213ENST00000550629 RNF19BQ6ZMZ0 732 aa9.86□□□□□ -0.83
SCAF11-213ENST00000550629 BEGAINQ9BUH8 593 aa9.86□□□□□ -0.83
SCAF11-213ENST00000550629 STK17AQ9UEE5 414 aa9.86□□□□□ -0.83
SCAF11-213ENST00000550629 SALL2Q9Y467 1007 aaPredicted RBP9.86□□□□□ -0.83
SCAF11-213ENST00000550629 ZBTB24O43167 697 aaPredicted RBP9.85□□□□□ -0.83
SCAF11-213ENST00000550629 MSS51Q4VC12 460 aa9.85□□□□□ -0.83
SCAF11-213ENST00000550629 CYP4X1Q8N118 509 aa9.85□□□□□ -0.83
SCAF11-213ENST00000550629 SPIRE2Q8WWL2 714 aa9.85□□□□□ -0.83
SCAF11-213ENST00000550629 Q3C1V9 767 aa9.84□□□□□ -0.83
SCAF11-213ENST00000550629 AAASQ9NRG9 546 aa9.84□□□□□ -0.83
SCAF11-213ENST00000550629 ERCC6Q03468 1493 aa9.84□□□□□ -0.83
SCAF11-213ENST00000550629 CEP164Q9UPV0 1460 aa9.84□□□□□ -0.83
SCAF11-213ENST00000550629 MOXD2PA6NHM9 499 aa9.8□□□□□ -0.84
SCAF11-213ENST00000550629 NDUFV2P19404 249 aa9.8□□□□□ -0.84
SCAF11-213ENST00000550629 TBC1D2Q9BYX2 928 aa9.8□□□□□ -0.84
SCAF11-213ENST00000550629 TOR4AQ9NXH8 423 aa9.8□□□□□ -0.84
SCAF11-213ENST00000550629 PCDHGC3Q9UN70 934 aa9.8□□□□□ -0.84
SCAF11-213ENST00000550629 KIF21AQ7Z4S6 1674 aa9.8□□□□□ -0.84
SCAF11-213ENST00000550629 TTC24A2A3L6 582 aaPredicted RBP9.79□□□□□ -0.84
SCAF11-213ENST00000550629 FDX1P10109 184 aa9.79□□□□□ -0.84
SCAF11-213ENST00000550629 CRIPAKQ8N1N5 446 aa9.79□□□□□ -0.84
SCAF11-213ENST00000550629 SYMPKQ92797 1274 aaKnown RBP9.79□□□□□ -0.84
SCAF11-213ENST00000550629 ABCC8Q09428 1581 aa9.79□□□□□ -0.84
SCAF11-213ENST00000550629 MRC2Q9UBG0 1479 aa9.79□□□□□ -0.84
SCAF11-213ENST00000550629 AXIN1O15169 862 aa9.78□□□□□ -0.84
SCAF11-213ENST00000550629 USB1Q9BQ65 265 aaKnown RBP9.78□□□□□ -0.84
SCAF11-213ENST00000550629 AVPP01185 164 aa9.77□□□□□ -0.85
SCAF11-213ENST00000550629 TRIM32Q13049 653 aa9.77□□□□□ -0.85
SCAF11-213ENST00000550629 CTC1Q2NKJ3 1217 aa9.77□□□□□ -0.85
SCAF11-213ENST00000550629 GPBP1L1Q9HC44 474 aaPredicted RBP9.77□□□□□ -0.85
SCAF11-213ENST00000550629 WFS1O76024 890 aa9.76□□□□□ -0.85
SCAF11-213ENST00000550629 DIXDC1Q155Q3 683 aa9.76□□□□□ -0.85
SCAF11-213ENST00000550629 TPRNQ4KMQ1 711 aa9.76□□□□□ -0.85
SCAF11-213ENST00000550629 WDR62O43379 1518 aa9.76□□□□□ -0.85
SCAF11-213ENST00000550629 THOC2Q8NI27 1593 aaKnown RBP9.75□□□□□ -0.85
SCAF11-213ENST00000550629 WNT7AO00755 349 aa9.75□□□□□ -0.85
SCAF11-213ENST00000550629 MMP16P51512 607 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms