RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 PRR14Q9BWN1 585 aa9.56□□□□□ -0.88
LIMA1-205ENST00000550592 COG6Q9Y2V7 657 aa9.56□□□□□ -0.88
LIMA1-205ENST00000550592 MORN1Q5T089 497 aa9.55□□□□□ -0.88
LIMA1-205ENST00000550592 FNBP4Q8N3X1 1017 aaPredicted RBP9.55□□□□□ -0.88
LIMA1-205ENST00000550592 PPP4CP60510 307 aa9.54□□□□□ -0.88
LIMA1-205ENST00000550592 PROSER2Q86WR7 435 aaPredicted RBP9.54□□□□□ -0.88
LIMA1-205ENST00000550592 C6orf229H3BNL8 230 aa9.53□□□□□ -0.88
LIMA1-205ENST00000550592 APBB1O00213 710 aa9.53□□□□□ -0.88
LIMA1-205ENST00000550592 USP17L8P0C7I0 530 aa9.53□□□□□ -0.88
LIMA1-205ENST00000550592 KRTAP3-3Q9BYR6 98 aa9.53□□□□□ -0.88
LIMA1-205ENST00000550592 KRTAP3-2Q9BYR7 98 aa9.53□□□□□ -0.88
LIMA1-205ENST00000550592 C1orf115Q9H7X2 142 aa9.53□□□□□ -0.88
LIMA1-205ENST00000550592 TSR3Q9UJK0 312 aaKnown RBP9.53□□□□□ -0.88
LIMA1-205ENST00000550592 BCAMP50895 628 aa9.52□□□□□ -0.89
LIMA1-205ENST00000550592 CTDSPL2Q05D32 466 aa9.52□□□□□ -0.89
LIMA1-205ENST00000550592 WNT2BQ93097 391 aa9.52□□□□□ -0.89
LIMA1-205ENST00000550592 HPS5Q9UPZ3 1129 aa9.52□□□□□ -0.89
LIMA1-205ENST00000550592 SLC27A5Q9Y2P5 690 aa9.52□□□□□ -0.89
LIMA1-205ENST00000550592 CFAP99D6REC4 459 aa9.51□□□□□ -0.89
LIMA1-205ENST00000550592 Q3C1V9 767 aa9.51□□□□□ -0.89
LIMA1-205ENST00000550592 PUS10Q3MIT2 529 aaKnown RBP9.51□□□□□ -0.89
LIMA1-205ENST00000550592 SYMPKQ92797 1274 aaKnown RBP9.51□□□□□ -0.89
LIMA1-205ENST00000550592 APLP1P51693 650 aa9.5□□□□□ -0.89
LIMA1-205ENST00000550592 HELBQ8NG08 1087 aaPredicted RBP9.5□□□□□ -0.89
LIMA1-205ENST00000550592 PRM3Q9NNZ6 103 aa9.5□□□□□ -0.89
LIMA1-205ENST00000550592 SALL2Q9Y467 1007 aaPredicted RBP9.5□□□□□ -0.89
LIMA1-205ENST00000550592 ARID3CA6NKF2 412 aa9.49□□□□□ -0.89
LIMA1-205ENST00000550592 RETREG3Q86VR2 466 aa9.49□□□□□ -0.89
LIMA1-205ENST00000550592 GJD4Q96KN9 370 aaPredicted RBP9.49□□□□□ -0.89
LIMA1-205ENST00000550592 GDPD2Q9HCC8 539 aa9.49□□□□□ -0.89
LIMA1-205ENST00000550592 PRR7Q8TB68 274 aa9.48□□□□□ -0.89
LIMA1-205ENST00000550592 POTEMA6NI47 508 aa9.47□□□□□ -0.89
LIMA1-205ENST00000550592 DESI1Q6ICB0 168 aa9.47□□□□□ -0.89
LIMA1-205ENST00000550592 BRICD5Q6PL45 260 aa9.47□□□□□ -0.89
LIMA1-205ENST00000550592 POTEGQ6S5H5 508 aa9.46□□□□□ -0.9
LIMA1-205ENST00000550592 SCUBE3Q8IX30 993 aa9.46□□□□□ -0.9
LIMA1-205ENST00000550592 HMX1Q9NP08 348 aaPredicted RBP9.46□□□□□ -0.9
LIMA1-205ENST00000550592 WBP1LQ9NX94 342 aa9.46□□□□□ -0.9
LIMA1-205ENST00000550592 ZNF777Q9ULD5 760 aaPredicted RBP9.46□□□□□ -0.9
LIMA1-205ENST00000550592 TBC1D2BQ9UPU7 963 aa9.46□□□□□ -0.9
LIMA1-205ENST00000550592 PCDHB3Q9Y5E6 796 aa9.46□□□□□ -0.9
LIMA1-205ENST00000550592 THSD4Q6ZMP0 1018 aa9.45□□□□□ -0.9
LIMA1-205ENST00000550592 LRRN4Q8WUT4 740 aa9.45□□□□□ -0.9
LIMA1-205ENST00000550592 TSC1Q92574 1164 aa9.45□□□□□ -0.9
LIMA1-205ENST00000550592 TRIM34Q9BYJ4 488 aa9.45□□□□□ -0.9
LIMA1-205ENST00000550592 PLSCR2Q9NRY7 297 aa9.45□□□□□ -0.9
LIMA1-205ENST00000550592 NR1I2O75469 434 aa9.44□□□□□ -0.9
LIMA1-205ENST00000550592 BLOC1S3Q6QNY0 202 aa9.44□□□□□ -0.9
LIMA1-205ENST00000550592 RNF19BQ6ZMZ0 732 aa9.44□□□□□ -0.9
LIMA1-205ENST00000550592 HOMEZQ8IX15 550 aa9.44□□□□□ -0.9
LIMA1-205ENST00000550592 THAP11Q96EK4 314 aa9.44□□□□□ -0.9
LIMA1-205ENST00000550592 USB1Q9BQ65 265 aaKnown RBP9.44□□□□□ -0.9
LIMA1-205ENST00000550592 ZNF330Q9Y3S2 320 aaPredicted RBP9.44□□□□□ -0.9
LIMA1-205ENST00000550592 NDUFB9Q9Y6M9 179 aa9.44□□□□□ -0.9
LIMA1-205ENST00000550592 WWC1Q8IX03 1113 aa9.43□□□□□ -0.9
LIMA1-205ENST00000550592 PER1O15534 1290 aaPredicted RBP9.42□□□□□ -0.9
LIMA1-205ENST00000550592 FMNL1O95466 1100 aaPredicted RBP9.42□□□□□ -0.9
LIMA1-205ENST00000550592 ABL2P42684 1182 aa9.42□□□□□ -0.9
LIMA1-205ENST00000550592 LYPD8Q6UX82 237 aa9.41□□□□□ -0.9
LIMA1-205ENST00000550592 NYAP1Q6ZVC0 841 aa9.41□□□□□ -0.9
LIMA1-205ENST00000550592 IRF5Q13568 498 aa9.4□□□□□ -0.9
LIMA1-205ENST00000550592 GPR37L1O60883 481 aa9.39□□□□□ -0.91
LIMA1-205ENST00000550592 CDAN1Q8IWY9 1227 aa9.39□□□□□ -0.91
LIMA1-205ENST00000550592 EPS8L1Q8TE68 723 aa9.39□□□□□ -0.91
LIMA1-205ENST00000550592 KCTD12Q96CX2 325 aaKnown RBP9.39□□□□□ -0.91
LIMA1-205ENST00000550592 ARID3AQ99856 593 aa9.39□□□□□ -0.91
LIMA1-205ENST00000550592 CCDC82Q8N4S0 544 aa9.38□□□□□ -0.91
LIMA1-205ENST00000550592 NR6A1Q15406 480 aa9.37□□□□□ -0.91
LIMA1-205ENST00000550592 SERPINA10Q9UK55 444 aa9.37□□□□□ -0.91
LIMA1-205ENST00000550592 JUNDP17535 347 aa9.36□□□□□ -0.91
LIMA1-205ENST00000550592 WASHC4Q2M389 1173 aa9.36□□□□□ -0.91
LIMA1-205ENST00000550592 MSS51Q4VC12 460 aa9.36□□□□□ -0.91
LIMA1-205ENST00000550592 COPS2P61201 443 aa9.35□□□□□ -0.91
LIMA1-205ENST00000550592 FAM160A2Q8N612 972 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-205ENST00000550592 SPSB2Q99619 263 aa9.35□□□□□ -0.91
LIMA1-205ENST00000550592 POM121CA8CG34 1229 aa9.34□□□□□ -0.91
LIMA1-205ENST00000550592 PTPRNQ16849 979 aa9.34□□□□□ -0.91
LIMA1-205ENST00000550592 ZPR1O75312 459 aa9.33□□□□□ -0.92
LIMA1-205ENST00000550592 F12P00748 615 aaPredicted RBP9.33□□□□□ -0.92
LIMA1-205ENST00000550592 CCDC97Q96F63 343 aaPredicted RBP9.33□□□□□ -0.92
LIMA1-205ENST00000550592 DXOO77932 396 aaKnown RBP9.32□□□□□ -0.92
LIMA1-205ENST00000550592 MMP16P51512 607 aa9.32□□□□□ -0.92
LIMA1-205ENST00000550592 PNMA1Q8ND90 353 aa9.32□□□□□ -0.92
LIMA1-205ENST00000550592 PTPN5P54829 565 aa9.31□□□□□ -0.92
LIMA1-205ENST00000550592 TJAP1Q5JTD0 557 aa9.31□□□□□ -0.92
LIMA1-205ENST00000550592 CALR3Q96L12 384 aaKnown RBP9.31□□□□□ -0.92
LIMA1-205ENST00000550592 MTRQ99707 1265 aa9.31□□□□□ -0.92
LIMA1-205ENST00000550592 ADH1BP00325 375 aa9.3□□□□□ -0.92
LIMA1-205ENST00000550592 GLMNQ92990 594 aa9.3□□□□□ -0.92
LIMA1-205ENST00000550592 EVA1BQ9NVM1 165 aa9.3□□□□□ -0.92
LIMA1-205ENST00000550592 VAC14Q08AM6 782 aa9.29□□□□□ -0.92
LIMA1-205ENST00000550592 HDGFL1Q5TGJ6 251 aa9.29□□□□□ -0.92
LIMA1-205ENST00000550592 IL21Q9HBE4 155 aa9.29□□□□□ -0.92
LIMA1-205ENST00000550592 CCNYL3P0C7X3 344 aa9.28□□□□□ -0.92
LIMA1-205ENST00000550592 ADAMTS19Q8TE59 1207 aa9.28□□□□□ -0.92
LIMA1-205ENST00000550592 ALG2Q9H553 416 aa9.28□□□□□ -0.92
LIMA1-205ENST00000550592 MAP10Q9P2G4 905 aa9.28□□□□□ -0.92
LIMA1-205ENST00000550592 FKBPLQ9UIM3 349 aa9.28□□□□□ -0.92
LIMA1-205ENST00000550592 MYT1LQ9UL68 1186 aa9.28□□□□□ -0.92
LIMA1-205ENST00000550592 TLL1O43897 1013 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms