RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 METP08581 1390 aa22.03■■□□□ 1.12
PTCH1-217ENST00000548420 SENP3-EIF4A1A0A087X0R7 540 aa22.03■■□□□ 1.12
PTCH1-217ENST00000548420 KRT27Q7Z3Y8 459 aa22.01■■□□□ 1.11
PTCH1-217ENST00000548420 ONECUT3O60422 494 aaPredicted RBP22■■□□□ 1.11
PTCH1-217ENST00000548420 ZNF784Q8NCA9 323 aaPredicted RBP21.95■■□□□ 1.1
PTCH1-217ENST00000548420 VPS8Q8N3P4 1428 aa21.95■■□□□ 1.1
PTCH1-217ENST00000548420 PXDNQ92626 1479 aa21.95■■□□□ 1.1
PTCH1-217ENST00000548420 CHIC2Q9UKJ5 165 aa21.94■■□□□ 1.1
PTCH1-217ENST00000548420 DAPK1P53355 1430 aa21.93■■□□□ 1.1
PTCH1-217ENST00000548420 XPCQ01831 940 aaPredicted RBP21.93■■□□□ 1.1
PTCH1-217ENST00000548420 KANK4Q5T7N3 995 aaPredicted RBP21.92■■□□□ 1.1
PTCH1-217ENST00000548420 VPS72Q15906 364 aa21.91■■□□□ 1.1
PTCH1-217ENST00000548420 EZH2Q15910 746 aaKnown RBP21.91■■□□□ 1.1
PTCH1-217ENST00000548420 CAMTA1Q9Y6Y1 1673 aa21.91■■□□□ 1.1
PTCH1-217ENST00000548420 FAM182BQ5T319 152 aa21.89■■□□□ 1.09
PTCH1-217ENST00000548420 C1QTNF8P60827 252 aa21.88■■□□□ 1.09
PTCH1-217ENST00000548420 RGPD1P0DJD0 1748 aa21.88■■□□□ 1.09
PTCH1-217ENST00000548420 ANKRD30AQ9BXX3 1397 aa21.87■■□□□ 1.09
PTCH1-217ENST00000548420 DISP2A7MBM2 1401 aa21.87■■□□□ 1.09
PTCH1-217ENST00000548420 PTPN23Q9H3S7 1636 aa21.87■■□□□ 1.09
PTCH1-217ENST00000548420 TNS1Q9HBL0 1735 aaKnown RBP21.86■■□□□ 1.09
PTCH1-217ENST00000548420 NPHP3Q7Z494 1330 aa21.85■■□□□ 1.09
PTCH1-217ENST00000548420 FOXO3O43524 673 aa21.85■■□□□ 1.09
PTCH1-217ENST00000548420 E9PCH4 1651 aa21.85■■□□□ 1.09
PTCH1-217ENST00000548420 CAMKK2Q96RR4 588 aa21.84■■□□□ 1.09
PTCH1-217ENST00000548420 USP32Q8NFA0 1604 aa21.84■■□□□ 1.09
PTCH1-217ENST00000548420 ROBO2Q9HCK4 1378 aa21.83■■□□□ 1.08
PTCH1-217ENST00000548420 ESCO1Q5FWF5 840 aa21.82■■□□□ 1.08
PTCH1-217ENST00000548420 CCDC9Q9Y3X0 531 aaKnown RBP21.82■■□□□ 1.08
PTCH1-217ENST00000548420 ADGRL2O95490 1459 aa21.82■■□□□ 1.08
PTCH1-217ENST00000548420 PLCH1Q4KWH8 1693 aa21.8■■□□□ 1.08
PTCH1-217ENST00000548420 CEP350Q5VT06 3117 aa21.8■■□□□ 1.08
PTCH1-217ENST00000548420 NINLQ9Y2I6 1382 aa21.78■■□□□ 1.08
PTCH1-217ENST00000548420 DCAF8L1A6NGE4 600 aa21.78■■□□□ 1.08
PTCH1-217ENST00000548420 FAM98CQ17RN3 349 aaKnown RBP21.78■■□□□ 1.08
PTCH1-217ENST00000548420 IQGAP3Q86VI3 1631 aa21.77■■□□□ 1.08
PTCH1-217ENST00000548420 A0A0G2JS52 829 aa21.77■■□□□ 1.08
PTCH1-217ENST00000548420 MYT1Q01538 1121 aa21.77■■□□□ 1.08
PTCH1-217ENST00000548420 UTRNP46939 3433 aa21.77■■□□□ 1.08
PTCH1-217ENST00000548420 NWD2Q9ULI1 1742 aa21.77■■□□□ 1.08
PTCH1-217ENST00000548420 SPATA31A3Q5VYP0 1347 aa21.77■■□□□ 1.07
PTCH1-217ENST00000548420 PPP1R1BQ9UD71 204 aaPredicted RBP21.76■■□□□ 1.07
PTCH1-217ENST00000548420 CABLES1Q8TDN4 633 aa21.75■■□□□ 1.07
PTCH1-217ENST00000548420 ANKRD50Q9ULJ7 1429 aa21.74■■□□□ 1.07
PTCH1-217ENST00000548420 SPON1Q9HCB6 807 aa21.73■■□□□ 1.07
PTCH1-217ENST00000548420 KCNQ2O43526 872 aa21.72■■□□□ 1.07
PTCH1-217ENST00000548420 NUP188Q5SRE5 1749 aa21.71■■□□□ 1.07
PTCH1-217ENST00000548420 RREB1Q92766 1687 aa21.7■■□□□ 1.06
PTCH1-217ENST00000548420 FAM83GA6ND36 823 aa21.7■■□□□ 1.06
PTCH1-217ENST00000548420 TRIM37O94972 964 aa21.69■■□□□ 1.06
PTCH1-217ENST00000548420 ZNF326Q5BKZ1 582 aaKnown RBP21.68■■□□□ 1.06
PTCH1-217ENST00000548420 NRAPQ86VF7 1730 aa21.68■■□□□ 1.06
PTCH1-217ENST00000548420 NUTM2FA1L443 756 aa21.67■■□□□ 1.06
PTCH1-217ENST00000548420 PLEKHG5O94827 1062 aa21.67■■□□□ 1.06
PTCH1-217ENST00000548420 CDC42BPGQ6DT37 1551 aa21.66■■□□□ 1.06
PTCH1-217ENST00000548420 NEXMIFQ5QGS0 1516 aa21.66■■□□□ 1.06
PTCH1-217ENST00000548420 PRAG1Q86YV5 1406 aa21.66■■□□□ 1.06
PTCH1-217ENST00000548420 LRPPRCP42704 1394 aaKnown RBP21.66■■□□□ 1.06
PTCH1-217ENST00000548420 APBA3O96018 575 aa21.65■■□□□ 1.06
PTCH1-217ENST00000548420 ABCA3Q99758 1704 aa21.64■■□□□ 1.06
PTCH1-217ENST00000548420 THSD7AQ9UPZ6 1657 aa21.64■■□□□ 1.05
PTCH1-217ENST00000548420 ADGRB2O60241 1585 aa21.64■■□□□ 1.05
PTCH1-217ENST00000548420 HFM1A2PYH4 1435 aa21.63■■□□□ 1.05
PTCH1-217ENST00000548420 PARD3Q8TEW0 1356 aa21.63■■□□□ 1.05
PTCH1-217ENST00000548420 CHD4Q14839 1912 aa21.63■■□□□ 1.05
PTCH1-217ENST00000548420 HAP1P54257 671 aaPredicted RBP21.62■■□□□ 1.05
PTCH1-217ENST00000548420 APLP2Q06481 763 aa21.62■■□□□ 1.05
PTCH1-217ENST00000548420 KRT28Q7Z3Y7 464 aa21.62■■□□□ 1.05
PTCH1-217ENST00000548420 NBPF8Q3BBV2 869 aa21.59■■□□□ 1.05
PTCH1-217ENST00000548420 NBPF14Q5TI25 921 aa21.59■■□□□ 1.05
PTCH1-217ENST00000548420 BTG4Q9NY30 223 aa21.59■■□□□ 1.05
PTCH1-217ENST00000548420 SPATA31A5Q5VU36 1347 aa21.58■■□□□ 1.05
PTCH1-217ENST00000548420 SPATA31A7Q8IWB4 1347 aa21.58■■□□□ 1.05
PTCH1-217ENST00000548420 NRKQ7Z2Y5 1582 aa21.57■■□□□ 1.04
PTCH1-217ENST00000548420 CCDC144AA2RUR9 1427 aa21.57■■□□□ 1.04
PTCH1-217ENST00000548420 NAIPQ13075 1403 aa21.57■■□□□ 1.04
PTCH1-217ENST00000548420 TNS3Q68CZ2 1445 aa21.57■■□□□ 1.04
PTCH1-217ENST00000548420 FAM196AQ6ZSG2 479 aa21.56■■□□□ 1.04
PTCH1-217ENST00000548420 PDGFDQ9GZP0 370 aaPredicted RBP21.55■■□□□ 1.04
PTCH1-217ENST00000548420 MYOM1P52179 1685 aa21.53■■□□□ 1.04
PTCH1-217ENST00000548420 CASZ1Q86V15 1759 aa21.52■■□□□ 1.04
PTCH1-217ENST00000548420 KIF1AQ12756 1690 aa21.51■■□□□ 1.03
PTCH1-217ENST00000548420 GIGYF1O75420 1035 aaPredicted RBP21.51■■□□□ 1.03
PTCH1-217ENST00000548420 PTGER2P43116 358 aa21.5■■□□□ 1.03
PTCH1-217ENST00000548420 WAPLQ7Z5K2 1190 aa21.5■■□□□ 1.03
PTCH1-217ENST00000548420 FMN2Q9NZ56 1722 aa21.49■■□□□ 1.03
PTCH1-217ENST00000548420 CLTCL1P53675 1640 aa21.48■■□□□ 1.03
PTCH1-217ENST00000548420 SYT17Q9BSW7 474 aa21.48■■□□□ 1.03
PTCH1-217ENST00000548420 RGPD8O14715 1765 aaPredicted RBP21.48■■□□□ 1.03
PTCH1-217ENST00000548420 NUP155O75694 1391 aa21.48■■□□□ 1.03
PTCH1-217ENST00000548420 COL14A1Q05707 1796 aaKnown RBP21.47■■□□□ 1.03
PTCH1-217ENST00000548420 LMOD2Q6P5Q4 547 aa21.47■■□□□ 1.03
PTCH1-217ENST00000548420 FHDC1Q9C0D6 1143 aaPredicted RBP21.46■■□□□ 1.03
PTCH1-217ENST00000548420 ANO8Q9HCE9 1232 aaPredicted RBP21.46■■□□□ 1.03
PTCH1-217ENST00000548420 SBNO1A3KN83 1393 aa21.46■■□□□ 1.03
PTCH1-217ENST00000548420 PLEKHH1Q9ULM0 1364 aa21.45■■□□□ 1.02
PTCH1-217ENST00000548420 ZBTB7AO95365 584 aa21.44■■□□□ 1.02
PTCH1-217ENST00000548420 PSME1Q06323 249 aa21.44■■□□□ 1.02
PTCH1-217ENST00000548420 SPATA31A1Q5TZJ5 1347 aa21.44■■□□□ 1.02
PTCH1-217ENST00000548420 ARHGEF10O15013 1369 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms