RNA–Protein interactions for RNA: ENST00000546816.5

CCDC38-204, Transcript of coiled-coil domain containing 38, humanhuman

TSL 2

Gene CCDC38, Length 465 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC38-204ENST00000546816 MMP16P51512 607 aa11.65□□□□□ -0.54
CCDC38-204ENST00000546816 MDM2Q00987 491 aaPredicted RBP11.64□□□□□ -0.55
CCDC38-204ENST00000546816 TULP1O00294 542 aaPredicted RBP11.63□□□□□ -0.55
CCDC38-204ENST00000546816 AVPP01185 164 aa11.63□□□□□ -0.55
CCDC38-204ENST00000546816 CRIPAKQ8N1N5 446 aa11.63□□□□□ -0.55
CCDC38-204ENST00000546816 ZBTB24O43167 697 aaPredicted RBP11.61□□□□□ -0.55
CCDC38-204ENST00000546816 USP46P62068 366 aa11.61□□□□□ -0.55
CCDC38-204ENST00000546816 CYP4X1Q8N118 509 aa11.61□□□□□ -0.55
CCDC38-204ENST00000546816 HLA-CQ95604 372 aa11.61□□□□□ -0.55
CCDC38-204ENST00000546816 CCDC102AQ96A19 550 aa11.61□□□□□ -0.55
CCDC38-204ENST00000546816 DXOO77932 396 aaKnown RBP11.6□□□□□ -0.55
CCDC38-204ENST00000546816 USB1Q9BQ65 265 aaKnown RBP11.6□□□□□ -0.55
CCDC38-204ENST00000546816 HOXA2O43364 376 aa11.58□□□□□ -0.56
CCDC38-204ENST00000546816 DACH1Q9UI36 760 aa11.58□□□□□ -0.56
CCDC38-204ENST00000546816 WNT7AO00755 349 aa11.57□□□□□ -0.56
CCDC38-204ENST00000546816 TRIM32Q13049 653 aa11.57□□□□□ -0.56
CCDC38-204ENST00000546816 GPCPD1Q9NPB8 672 aa11.56□□□□□ -0.56
CCDC38-204ENST00000546816 FAM217BQ9NTX9 383 aaPredicted RBP11.56□□□□□ -0.56
CCDC38-204ENST00000546816 SMCPP49901 116 aaPredicted RBP11.55□□□□□ -0.56
CCDC38-204ENST00000546816 CTC1Q2NKJ3 1217 aa11.55□□□□□ -0.56
CCDC38-204ENST00000546816 CLCN1P35523 988 aa11.54□□□□□ -0.56
CCDC38-204ENST00000546816 TTC24A2A3L6 582 aaPredicted RBP11.53□□□□□ -0.56
CCDC38-204ENST00000546816 AXIN1O15169 862 aa11.53□□□□□ -0.56
CCDC38-204ENST00000546816 GUCA2AQ02747 115 aa11.53□□□□□ -0.56
CCDC38-204ENST00000546816 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.53□□□□□ -0.56
CCDC38-204ENST00000546816 SNIP1Q8TAD8 396 aaKnown RBP11.53□□□□□ -0.56
CCDC38-204ENST00000546816 SMPD1P17405 629 aa11.52□□□□□ -0.57
CCDC38-204ENST00000546816 MRGPRX2Q96LB1 330 aa11.51□□□□□ -0.57
CCDC38-204ENST00000546816 JUNDP17535 347 aa11.49□□□□□ -0.57
CCDC38-204ENST00000546816 LCE2AQ5TA79 106 aaPredicted RBP11.49□□□□□ -0.57
CCDC38-204ENST00000546816 SYMPKQ92797 1274 aaKnown RBP11.49□□□□□ -0.57
CCDC38-204ENST00000546816 REPIN1Q9BWE0 567 aaKnown RBP11.49□□□□□ -0.57
CCDC38-204ENST00000546816 GMPR2Q9P2T1 348 aaKnown RBP11.49□□□□□ -0.57
CCDC38-204ENST00000546816 SKOR1P84550 965 aa11.48□□□□□ -0.57
CCDC38-204ENST00000546816 CCDC24Q8N4L8 307 aa11.48□□□□□ -0.57
CCDC38-204ENST00000546816 J3QL48 77 aa11.47□□□□□ -0.57
CCDC38-204ENST00000546816 TREML4Q6UXN2 200 aa11.46□□□□□ -0.57
CCDC38-204ENST00000546816 WNT7BP56706 349 aa11.45□□□□□ -0.58
CCDC38-204ENST00000546816 RC3H1Q5TC82 1133 aaKnown RBP11.45□□□□□ -0.58
CCDC38-204ENST00000546816 RETREG3Q86VR2 466 aa11.45□□□□□ -0.58
CCDC38-204ENST00000546816 NUTM1Q86Y26 1132 aa11.45□□□□□ -0.58
CCDC38-204ENST00000546816 PCDHGC3Q9UN70 934 aa11.45□□□□□ -0.58
CCDC38-204ENST00000546816 KRI1Q8N9T8 703 aaKnown RBP11.44□□□□□ -0.58
CCDC38-204ENST00000546816 C11orf95C9JLR9 678 aaPredicted RBP11.43□□□□□ -0.58
CCDC38-204ENST00000546816 FDX1P10109 184 aa11.42□□□□□ -0.58
CCDC38-204ENST00000546816 SSTR3P32745 418 aaPredicted RBP11.42□□□□□ -0.58
CCDC38-204ENST00000546816 PTCRAQ6ISU1 281 aaPredicted RBP11.41□□□□□ -0.58
CCDC38-204ENST00000546816 BARGINQ6ZT62 677 aa11.41□□□□□ -0.58
CCDC38-204ENST00000546816 HPS1Q92902 700 aa11.41□□□□□ -0.58
CCDC38-204ENST00000546816 NUDT12Q9BQG2 462 aa11.41□□□□□ -0.58
CCDC38-204ENST00000546816 SPIRE2Q8WWL2 714 aa11.4□□□□□ -0.58
CCDC38-204ENST00000546816 ATP13A2Q9NQ11 1180 aa11.4□□□□□ -0.58
CCDC38-204ENST00000546816 ZMYND10O75800 440 aa11.39□□□□□ -0.59
CCDC38-204ENST00000546816 AMHR2Q16671 573 aa11.38□□□□□ -0.59
CCDC38-204ENST00000546816 C6orf229H3BNL8 230 aa11.37□□□□□ -0.59
CCDC38-204ENST00000546816 SIAH2O43255 324 aa11.37□□□□□ -0.59
CCDC38-204ENST00000546816 NDUFV2P19404 249 aa11.36□□□□□ -0.59
CCDC38-204ENST00000546816 MOXD2PA6NHM9 499 aa11.35□□□□□ -0.59
CCDC38-204ENST00000546816 MS4A1P11836 297 aa11.35□□□□□ -0.59
CCDC38-204ENST00000546816 CCNYL3P0C7X3 344 aa11.34□□□□□ -0.59
CCDC38-204ENST00000546816 SNRPBP14678 240 aaKnown RBP11.34□□□□□ -0.59
CCDC38-204ENST00000546816 NFX1Q12986 1120 aaKnown RBP11.34□□□□□ -0.59
CCDC38-204ENST00000546816 ZC3H15Q8WU90 426 aaKnown RBP11.34□□□□□ -0.59
CCDC38-204ENST00000546816 WFS1O76024 890 aa11.33□□□□□ -0.6
CCDC38-204ENST00000546816 TTLL12Q14166 644 aaPredicted RBP11.33□□□□□ -0.6
CCDC38-204ENST00000546816 PTPRNQ16849 979 aa11.33□□□□□ -0.6
CCDC38-204ENST00000546816 GIGYF2Q6Y7W6 1299 aaKnown RBP11.33□□□□□ -0.6
CCDC38-204ENST00000546816 TRIM47Q96LD4 638 aa11.33□□□□□ -0.6
CCDC38-204ENST00000546816 ALDH1A1P00352 501 aa11.32□□□□□ -0.6
CCDC38-204ENST00000546816 SH3BP2P78314 561 aa11.32□□□□□ -0.6
CCDC38-204ENST00000546816 SENP2Q9HC62 589 aa11.32□□□□□ -0.6
CCDC38-204ENST00000546816 EHBP1Q8NDI1 1231 aa11.31□□□□□ -0.6
CCDC38-204ENST00000546816 EVA1BQ9NVM1 165 aa11.31□□□□□ -0.6
CCDC38-204ENST00000546816 DESI1Q6ICB0 168 aa11.29□□□□□ -0.6
CCDC38-204ENST00000546816 PRR7Q8TB68 274 aa11.29□□□□□ -0.6
CCDC38-204ENST00000546816 BEGAINQ9BUH8 593 aa11.29□□□□□ -0.6
CCDC38-204ENST00000546816 UNC93B1Q9H1C4 597 aa11.29□□□□□ -0.6
CCDC38-204ENST00000546816 KCNH2Q12809 1159 aa11.28□□□□□ -0.6
CCDC38-204ENST00000546816 MTMR2Q13614 643 aa11.28□□□□□ -0.6
CCDC38-204ENST00000546816 SPDYE5A6NIY4 337 aa11.27□□□□□ -0.61
CCDC38-204ENST00000546816 GJA5P36382 358 aa11.27□□□□□ -0.61
CCDC38-204ENST00000546816 LCE2CQ5TA81 110 aa11.27□□□□□ -0.61
CCDC38-204ENST00000546816 KIFC2Q96AC6 838 aa11.27□□□□□ -0.61
CCDC38-204ENST00000546816 WIPF1O43516 503 aa11.25□□□□□ -0.61
CCDC38-204ENST00000546816 PARP9Q8IXQ6 854 aa11.25□□□□□ -0.61
CCDC38-204ENST00000546816 BAP1Q92560 729 aa11.25□□□□□ -0.61
CCDC38-204ENST00000546816 TBC1D2Q9BYX2 928 aa11.25□□□□□ -0.61
CCDC38-204ENST00000546816 TERTO14746 1132 aaKnown RBP11.24□□□□□ -0.61
CCDC38-204ENST00000546816 RSBN1LQ6PCB5 846 aaPredicted RBP11.24□□□□□ -0.61
CCDC38-204ENST00000546816 TRIM66O15016 1216 aa11.23□□□□□ -0.61
CCDC38-204ENST00000546816 LINC01559Q495D7 138 aa11.23□□□□□ -0.61
CCDC38-204ENST00000546816 WASF2Q9Y6W5 498 aa11.23□□□□□ -0.61
CCDC38-204ENST00000546816 TRIM46Q7Z4K8 759 aa11.22□□□□□ -0.61
CCDC38-204ENST00000546816 ZNF511Q8NB15 262 aa11.22□□□□□ -0.61
CCDC38-204ENST00000546816 PCDHB15Q9Y5E8 787 aa11.22□□□□□ -0.61
CCDC38-204ENST00000546816 SPTLC1O15269 473 aa11.21□□□□□ -0.61
CCDC38-204ENST00000546816 CAPN5O15484 640 aaPredicted RBP11.21□□□□□ -0.61
CCDC38-204ENST00000546816 DIXDC1Q155Q3 683 aa11.21□□□□□ -0.61
CCDC38-204ENST00000546816 LYPD8Q6UX82 237 aa11.21□□□□□ -0.61
CCDC38-204ENST00000546816 MPNDQ8N594 471 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms