RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 BRD4O60885 1362 aaPredicted RBP19.37■□□□□ 0.69
VPS33A-209ENST00000544349 AMER1Q5JTC6 1135 aaPredicted RBP19.36■□□□□ 0.69
VPS33A-209ENST00000544349 TXNDC2Q86VQ3 553 aa19.36■□□□□ 0.69
VPS33A-209ENST00000544349 PLEKHG1Q9ULL1 1385 aa19.36■□□□□ 0.69
VPS33A-209ENST00000544349 THEMISQ8N1K5 641 aaPredicted RBP19.36■□□□□ 0.69
VPS33A-209ENST00000544349 TMC1Q8TDI8 760 aa19.36■□□□□ 0.69
VPS33A-209ENST00000544349 EID1Q9Y6B2 187 aa19.35■□□□□ 0.69
VPS33A-209ENST00000544349 ADAMTS13Q76LX8 1427 aa19.35■□□□□ 0.69
VPS33A-209ENST00000544349 NPC1L1Q9UHC9 1359 aa19.34■□□□□ 0.69
VPS33A-209ENST00000544349 NLRP13Q86W25 1043 aa19.34■□□□□ 0.69
VPS33A-209ENST00000544349 MINK1Q8N4C8 1332 aaPredicted RBP19.34■□□□□ 0.69
VPS33A-209ENST00000544349 CARD14Q9BXL6 1004 aa19.33■□□□□ 0.69
VPS33A-209ENST00000544349 SLC12A5Q9H2X9 1139 aa19.33■□□□□ 0.69
VPS33A-209ENST00000544349 KNDC1Q76NI1 1749 aa19.33■□□□□ 0.68
VPS33A-209ENST00000544349 IRX6P78412 446 aaPredicted RBP19.33■□□□□ 0.68
VPS33A-209ENST00000544349 CABP2Q9NPB3 220 aa19.33■□□□□ 0.68
VPS33A-209ENST00000544349 CEP170BQ9Y4F5 1589 aaPredicted RBP19.32■□□□□ 0.68
VPS33A-209ENST00000544349 PNISRQ8TF01 805 aaKnown RBP19.31■□□□□ 0.68
VPS33A-209ENST00000544349 WAPLQ7Z5K2 1190 aa19.31■□□□□ 0.68
VPS33A-209ENST00000544349 ZBED9Q6R2W3 1325 aa19.31■□□□□ 0.68
VPS33A-209ENST00000544349 TECPR2O15040 1411 aa19.3■□□□□ 0.68
VPS33A-209ENST00000544349 SIRT1Q96EB6 747 aa19.3■□□□□ 0.68
VPS33A-209ENST00000544349 PLEKHH1Q9ULM0 1364 aa19.3■□□□□ 0.68
VPS33A-209ENST00000544349 MED14O60244 1454 aa19.3■□□□□ 0.68
VPS33A-209ENST00000544349 SRPK2P78362 688 aaKnown RBP19.3■□□□□ 0.68
VPS33A-209ENST00000544349 CPS1P31327 1500 aa19.28■□□□□ 0.68
VPS33A-209ENST00000544349 FAM135BQ49AJ0 1406 aa19.28■□□□□ 0.68
VPS33A-209ENST00000544349 SETD1BQ9UPS6 1966 aaKnown RBP19.27■□□□□ 0.68
VPS33A-209ENST00000544349 ATAD2Q6PL18 1390 aa19.27■□□□□ 0.68
VPS33A-209ENST00000544349 NINLQ9Y2I6 1382 aa19.27■□□□□ 0.67
VPS33A-209ENST00000544349 CDK19Q9BWU1 502 aa19.27■□□□□ 0.67
VPS33A-209ENST00000544349 NSD3Q9BZ95 1437 aa19.26■□□□□ 0.67
VPS33A-209ENST00000544349 ANKRD36BQ8N2N9 1353 aa19.26■□□□□ 0.67
VPS33A-209ENST00000544349 ZNF142P52746 1687 aaPredicted RBP19.26■□□□□ 0.67
VPS33A-209ENST00000544349 SLC26A8Q96RN1 970 aa19.25■□□□□ 0.67
VPS33A-209ENST00000544349 PPP2R1AP30153 589 aa19.24■□□□□ 0.67
VPS33A-209ENST00000544349 TBX22Q9Y458 520 aa19.24■□□□□ 0.67
VPS33A-209ENST00000544349 USP32Q8NFA0 1604 aa19.23■□□□□ 0.67
VPS33A-209ENST00000544349 DIP2AQ14689 1571 aa19.22■□□□□ 0.67
VPS33A-209ENST00000544349 ROBO2Q9HCK4 1378 aa19.22■□□□□ 0.67
VPS33A-209ENST00000544349 PTPRUQ92729 1446 aa19.21■□□□□ 0.67
VPS33A-209ENST00000544349 WASLO00401 505 aaPredicted RBP19.2■□□□□ 0.66
VPS33A-209ENST00000544349 A0A1W2PP64 1363 aa19.19■□□□□ 0.66
VPS33A-209ENST00000544349 CGNL1Q0VF96 1302 aa19.19■□□□□ 0.66
VPS33A-209ENST00000544349 CD163L1Q9NR16 1453 aa19.18■□□□□ 0.66
VPS33A-209ENST00000544349 TERF2IPQ9NYB0 399 aa19.18■□□□□ 0.66
VPS33A-209ENST00000544349 ANKLE2Q86XL3 938 aa19.18■□□□□ 0.66
VPS33A-209ENST00000544349 AMOTL2Q9Y2J4 779 aa19.17■□□□□ 0.66
VPS33A-209ENST00000544349 SENP3-EIF4A1A0A087X0R7 540 aa19.16■□□□□ 0.66
VPS33A-209ENST00000544349 CABP1Q9NZU7 370 aa19.16■□□□□ 0.66
VPS33A-209ENST00000544349 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.15■□□□□ 0.66
VPS33A-209ENST00000544349 NSD2O96028 1365 aa19.15■□□□□ 0.66
VPS33A-209ENST00000544349 MORC1Q86VD1 984 aa19.15■□□□□ 0.66
VPS33A-209ENST00000544349 HDGFL2Q7Z4V5 671 aaPredicted RBP19.14■□□□□ 0.65
VPS33A-209ENST00000544349 SMG6Q86US8 1419 aaKnown RBP19.14■□□□□ 0.65
VPS33A-209ENST00000544349 ADGRB2O60241 1585 aa19.14■□□□□ 0.65
VPS33A-209ENST00000544349 KDM4FA0A1W2PPD8 638 aa19.13■□□□□ 0.65
VPS33A-209ENST00000544349 INSRP06213 1382 aa19.13■□□□□ 0.65
VPS33A-209ENST00000544349 PTCH1Q13635 1447 aa19.13■□□□□ 0.65
VPS33A-209ENST00000544349 PIK3R4Q99570 1358 aa19.13■□□□□ 0.65
VPS33A-209ENST00000544349 XRN1Q8IZH2 1706 aaKnown RBP19.12■□□□□ 0.65
VPS33A-209ENST00000544349 ATP7BP35670 1465 aa19.12■□□□□ 0.65
VPS33A-209ENST00000544349 NUDT16Q96DE0 195 aaKnown RBP19.12■□□□□ 0.65
VPS33A-209ENST00000544349 PPIP5K1Q6PFW1 1433 aa19.1■□□□□ 0.65
VPS33A-209ENST00000544349 CCDC61Q9Y6R9 512 aa19.09■□□□□ 0.65
VPS33A-209ENST00000544349 RBM19Q9Y4C8 960 aaKnown RBP19.08■□□□□ 0.64
VPS33A-209ENST00000544349 BLMP54132 1417 aaPredicted RBP19.08■□□□□ 0.64
VPS33A-209ENST00000544349 FYB1O15117 783 aa19.07■□□□□ 0.64
VPS33A-209ENST00000544349 CPSF1Q10570 1443 aaKnown RBP19.07■□□□□ 0.64
VPS33A-209ENST00000544349 ADAMTS8Q9UP79 889 aa19.07■□□□□ 0.64
VPS33A-209ENST00000544349 PRR36Q9H6K5 1346 aa19.07■□□□□ 0.64
VPS33A-209ENST00000544349 ANKRD26Q9UPS8 1709 aa19.07■□□□□ 0.64
VPS33A-209ENST00000544349 POLR3AO14802 1390 aaPredicted RBP19.07■□□□□ 0.64
VPS33A-209ENST00000544349 CHD2O14647 1828 aaKnown RBP19.06■□□□□ 0.64
VPS33A-209ENST00000544349 KCNA6P17658 529 aa19.06■□□□□ 0.64
VPS33A-209ENST00000544349 TNNT2P45379 298 aaPredicted RBP19.06■□□□□ 0.64
VPS33A-209ENST00000544349 WDR43Q15061 677 aaKnown RBP eCLIP19.06■□□□□ 0.64
VPS33A-209ENST00000544349 ERICH6BQ5W0A0 696 aa19.06■□□□□ 0.64
VPS33A-209ENST00000544349 PPP4R2Q9NY27 417 aa19.06■□□□□ 0.64
VPS33A-209ENST00000544349 NUDCQ9Y266 331 aa19.06■□□□□ 0.64
VPS33A-209ENST00000544349 NCKAP5LQ9HCH0 1330 aa19.06■□□□□ 0.64
VPS33A-209ENST00000544349 GGNBP2Q9H3C7 697 aa19.06■□□□□ 0.64
VPS33A-209ENST00000544349 CDC42BPGQ6DT37 1551 aa19.05■□□□□ 0.64
VPS33A-209ENST00000544349 KIF20BQ96Q89 1820 aa19.05■□□□□ 0.64
VPS33A-209ENST00000544349 NPHP4O75161 1426 aaPredicted RBP19.04■□□□□ 0.64
VPS33A-209ENST00000544349 AKAP12Q02952 1782 aa19.03■□□□□ 0.64
VPS33A-209ENST00000544349 TOPAZ1Q8N9V7 1692 aa19.03■□□□□ 0.64
VPS33A-209ENST00000544349 MON2Q7Z3U7 1717 aa19.02■□□□□ 0.64
VPS33A-209ENST00000544349 EDC4Q6P2E9 1401 aaKnown RBP19.02■□□□□ 0.64
VPS33A-209ENST00000544349 B4GALNT3Q6L9W6 998 aa19.02■□□□□ 0.64
VPS33A-209ENST00000544349 ITSN1Q15811 1721 aa19.02■□□□□ 0.63
VPS33A-209ENST00000544349 MTHFSP49914 203 aa19.01■□□□□ 0.63
VPS33A-209ENST00000544349 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.01■□□□□ 0.63
VPS33A-209ENST00000544349 ZNF692Q9BU19 519 aaPredicted RBP19.01■□□□□ 0.63
VPS33A-209ENST00000544349 PLEKHG3A1L390 1219 aa19■□□□□ 0.63
VPS33A-209ENST00000544349 NUTM2FA1L443 756 aa19■□□□□ 0.63
VPS33A-209ENST00000544349 RNF123Q5XPI4 1314 aa19■□□□□ 0.63
VPS33A-209ENST00000544349 SHPRHQ149N8 1683 aa18.98■□□□□ 0.63
VPS33A-209ENST00000544349 CFAP53Q96M91 514 aa18.97■□□□□ 0.63
VPS33A-209ENST00000544349 SALL2Q9Y467 1007 aaPredicted RBP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms