RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 NUCB2P80303 420 aa12.53□□□□□ -0.4
PCDH9-204ENST00000544246 SMARCE1Q969G3 411 aa12.53□□□□□ -0.4
PCDH9-204ENST00000544246 ARHGAP35Q9NRY4 1499 aa12.53□□□□□ -0.4
PCDH9-204ENST00000544246 SAMD1Q6SPF0 538 aaPredicted RBP12.52□□□□□ -0.4
PCDH9-204ENST00000544246 TMEM132AQ24JP5 1023 aa12.52□□□□□ -0.4
PCDH9-204ENST00000544246 GOLGA6L7A0A1B0GV03 622 aa12.52□□□□□ -0.41
PCDH9-204ENST00000544246 RRP7AQ9Y3A4 280 aaKnown RBP12.52□□□□□ -0.41
PCDH9-204ENST00000544246 EVA1CP58658 441 aa12.52□□□□□ -0.41
PCDH9-204ENST00000544246 AXDND1Q5T1B0 1012 aaPredicted RBP12.52□□□□□ -0.41
PCDH9-204ENST00000544246 ANKRD62A6NC57 917 aa12.52□□□□□ -0.41
PCDH9-204ENST00000544246 KIF3BO15066 747 aa12.52□□□□□ -0.41
PCDH9-204ENST00000544246 SYCP1Q15431 976 aa12.52□□□□□ -0.41
PCDH9-204ENST00000544246 SEPT7Q16181 437 aaKnown RBP12.52□□□□□ -0.41
PCDH9-204ENST00000544246 NGEFQ8N5V2 710 aa12.51□□□□□ -0.41
PCDH9-204ENST00000544246 XBP1P17861 261 aa12.51□□□□□ -0.41
PCDH9-204ENST00000544246 FOXD1Q16676 465 aa12.51□□□□□ -0.41
PCDH9-204ENST00000544246 ROCK1Q13464 1354 aa12.51□□□□□ -0.41
PCDH9-204ENST00000544246 G3BP1Q13283 466 aaKnown RBP eCLIP12.51□□□□□ -0.41
PCDH9-204ENST00000544246 WASHC2CQ9Y4E1 1318 aa12.51□□□□□ -0.41
PCDH9-204ENST00000544246 GOLGA6L10A6NI86 522 aa12.5□□□□□ -0.41
PCDH9-204ENST00000544246 MAGEC2Q9UBF1 373 aaPredicted RBP12.5□□□□□ -0.41
PCDH9-204ENST00000544246 ELL2O00472 640 aaPredicted RBP12.5□□□□□ -0.41
PCDH9-204ENST00000544246 TEFQ10587 303 aa12.5□□□□□ -0.41
PCDH9-204ENST00000544246 KIAA0754O94854 1291 aa12.5□□□□□ -0.41
PCDH9-204ENST00000544246 INTS3Q68E01 1043 aaKnown RBP12.5□□□□□ -0.41
PCDH9-204ENST00000544246 E9PSI1 815 aa12.5□□□□□ -0.41
PCDH9-204ENST00000544246 DNMBPQ6XZF7 1577 aa12.5□□□□□ -0.41
PCDH9-204ENST00000544246 LETM1O95202 739 aaPredicted RBP12.49□□□□□ -0.41
PCDH9-204ENST00000544246 KIF15Q9NS87 1388 aa12.49□□□□□ -0.41
PCDH9-204ENST00000544246 CT47B1P0C2W7 299 aaPredicted RBP12.49□□□□□ -0.41
PCDH9-204ENST00000544246 ENOX2Q16206 610 aaKnown RBP12.49□□□□□ -0.41
PCDH9-204ENST00000544246 DDX58O95786 925 aaKnown RBP12.49□□□□□ -0.41
PCDH9-204ENST00000544246 EIF2S2P20042 333 aaKnown RBP12.49□□□□□ -0.41
PCDH9-204ENST00000544246 FILIP1LQ4L180 1135 aa12.49□□□□□ -0.41
PCDH9-204ENST00000544246 RALYLQ86SE5 291 aaKnown RBP12.49□□□□□ -0.41
PCDH9-204ENST00000544246 INCENPQ9NQS7 918 aa12.48□□□□□ -0.41
PCDH9-204ENST00000544246 RBM33Q96EV2 1170 aaKnown RBP12.48□□□□□ -0.41
PCDH9-204ENST00000544246 POLA1P09884 1462 aaPredicted RBP12.48□□□□□ -0.41
PCDH9-204ENST00000544246 BCL2L13Q9BXK5 485 aa12.48□□□□□ -0.41
PCDH9-204ENST00000544246 DDX19BQ9UMR2 479 aa12.48□□□□□ -0.41
PCDH9-204ENST00000544246 EZRP15311 586 aaKnown RBP12.48□□□□□ -0.41
PCDH9-204ENST00000544246 NUP155O75694 1391 aa12.48□□□□□ -0.41
PCDH9-204ENST00000544246 ERC2O15083 957 aa12.48□□□□□ -0.41
PCDH9-204ENST00000544246 SMC2O95347 1197 aa12.48□□□□□ -0.41
PCDH9-204ENST00000544246 HNRNPMP52272 730 aaKnown RBP eCLIP12.48□□□□□ -0.41
PCDH9-204ENST00000544246 MYBBP1AQ9BQG0 1328 aaKnown RBP12.47□□□□□ -0.41
PCDH9-204ENST00000544246 COG3Q96JB2 828 aa12.47□□□□□ -0.41
PCDH9-204ENST00000544246 CDK5RAP3Q96JB5 506 aa12.47□□□□□ -0.41
PCDH9-204ENST00000544246 CRBNQ96SW2 442 aa12.47□□□□□ -0.41
PCDH9-204ENST00000544246 FHOD3Q2V2M9 1422 aa12.47□□□□□ -0.41
PCDH9-204ENST00000544246 MPHOSPH9Q99550 1183 aa12.46□□□□□ -0.41
PCDH9-204ENST00000544246 FYB1O15117 783 aa12.46□□□□□ -0.41
PCDH9-204ENST00000544246 SDF4Q9BRK5 362 aa12.46□□□□□ -0.41
PCDH9-204ENST00000544246 RRP1P56182 461 aaKnown RBP12.46□□□□□ -0.42
PCDH9-204ENST00000544246 RABEP1Q15276 862 aa12.46□□□□□ -0.42
PCDH9-204ENST00000544246 HSP90AB4PQ58FF6 505 aa12.46□□□□□ -0.42
PCDH9-204ENST00000544246 PIP4K2AP48426 406 aaPredicted RBP12.46□□□□□ -0.42
PCDH9-204ENST00000544246 NASPP49321 788 aaPredicted RBP12.45□□□□□ -0.42
PCDH9-204ENST00000544246 API5Q9BZZ5 524 aaKnown RBP12.45□□□□□ -0.42
PCDH9-204ENST00000544246 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.45□□□□□ -0.42
PCDH9-204ENST00000544246 ANKRD30AQ9BXX3 1397 aa12.45□□□□□ -0.42
PCDH9-204ENST00000544246 NUTM2DQ5VT03 806 aaPredicted RBP12.45□□□□□ -0.42
PCDH9-204ENST00000544246 STK11IPQ8N1F8 1099 aa12.45□□□□□ -0.42
PCDH9-204ENST00000544246 TRIM5Q9C035 493 aa12.45□□□□□ -0.42
PCDH9-204ENST00000544246 COG6Q9Y2V7 657 aa12.45□□□□□ -0.42
PCDH9-204ENST00000544246 IKQ13123 557 aaPredicted RBP12.44□□□□□ -0.42
PCDH9-204ENST00000544246 CCDC27Q2M243 656 aa12.44□□□□□ -0.42
PCDH9-204ENST00000544246 CCAR1Q8IX12 1150 aaKnown RBP12.44□□□□□ -0.42
PCDH9-204ENST00000544246 PSMA5P28066 241 aa12.44□□□□□ -0.42
PCDH9-204ENST00000544246 WASHC4Q2M389 1173 aa12.44□□□□□ -0.42
PCDH9-204ENST00000544246 NINLQ9Y2I6 1382 aa12.44□□□□□ -0.42
PCDH9-204ENST00000544246 PLIN1O60240 522 aa12.44□□□□□ -0.42
PCDH9-204ENST00000544246 EXOC6Q8TAG9 804 aa12.44□□□□□ -0.42
PCDH9-204ENST00000544246 NUTM2FA1L443 756 aa12.44□□□□□ -0.42
PCDH9-204ENST00000544246 MRE11P49959 708 aa12.44□□□□□ -0.42
PCDH9-204ENST00000544246 SYNJ1O43426 1573 aa12.44□□□□□ -0.42
PCDH9-204ENST00000544246 KRT18P05783 430 aaKnown RBP12.43□□□□□ -0.42
PCDH9-204ENST00000544246 TXLNAP40222 546 aa12.43□□□□□ -0.42
PCDH9-204ENST00000544246 TXLNBQ8N3L3 684 aa12.43□□□□□ -0.42
PCDH9-204ENST00000544246 ZNHIT6Q9NWK9 470 aaKnown RBP12.43□□□□□ -0.42
PCDH9-204ENST00000544246 KIF7Q2M1P5 1343 aa12.43□□□□□ -0.42
PCDH9-204ENST00000544246 PRDM2Q13029 1718 aa12.43□□□□□ -0.42
PCDH9-204ENST00000544246 IGF1RP08069 1367 aa12.43□□□□□ -0.42
PCDH9-204ENST00000544246 RSPH4AQ5TD94 716 aa12.43□□□□□ -0.42
PCDH9-204ENST00000544246 CCDC181Q5TID7 509 aa12.43□□□□□ -0.42
PCDH9-204ENST00000544246 GBP2P32456 591 aaPredicted RBP12.42□□□□□ -0.42
PCDH9-204ENST00000544246 LUC7LQ9NQ29 371 aaKnown RBP12.42□□□□□ -0.42
PCDH9-204ENST00000544246 CCDC18Q5T9S5 1454 aa12.42□□□□□ -0.42
PCDH9-204ENST00000544246 TSPY26PQ9H489 355 aa12.42□□□□□ -0.42
PCDH9-204ENST00000544246 BRPF1P55201 1214 aaPredicted RBP12.42□□□□□ -0.42
PCDH9-204ENST00000544246 SART3Q15020 963 aaKnown RBP12.42□□□□□ -0.42
PCDH9-204ENST00000544246 DYDC1Q8WWB3 177 aa12.42□□□□□ -0.42
PCDH9-204ENST00000544246 PDCL3Q9H2J4 239 aa12.42□□□□□ -0.42
PCDH9-204ENST00000544246 USP8P40818 1118 aa12.41□□□□□ -0.42
PCDH9-204ENST00000544246 DHX8Q14562 1220 aaKnown RBP12.41□□□□□ -0.42
PCDH9-204ENST00000544246 NECTIN2Q92692 538 aa12.41□□□□□ -0.42
PCDH9-204ENST00000544246 MTMR7Q9Y216 660 aa12.41□□□□□ -0.42
PCDH9-204ENST00000544246 KINO60870 393 aaKnown RBP12.41□□□□□ -0.42
PCDH9-204ENST00000544246 KDM4AO75164 1064 aa12.41□□□□□ -0.42
PCDH9-204ENST00000544246 TAX1BP1Q86VP1 789 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms