RNA–Protein interactions for RNA: ENST00000543356.6

GNE-206, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 1 (best) BASIC

Gene GNE, Length 2,576 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-206ENST00000543356 PRAM1Q96QH2 718 aa12.72□□□□□ -0.37
GNE-206ENST00000543356 SENP3Q9H4L4 574 aaPredicted RBP12.71□□□□□ -0.37
GNE-206ENST00000543356 CCDC184Q52MB2 194 aa12.71□□□□□ -0.38
GNE-206ENST00000543356 PLPPR3Q6T4P5 718 aa12.71□□□□□ -0.38
GNE-206ENST00000543356 TXNDC2Q86VQ3 553 aa12.71□□□□□ -0.38
GNE-206ENST00000543356 SIRT1Q96EB6 747 aa12.71□□□□□ -0.38
GNE-206ENST00000543356 MRS2Q9HD23 443 aa12.71□□□□□ -0.38
GNE-206ENST00000543356 BRD4O60885 1362 aaPredicted RBP12.7□□□□□ -0.38
GNE-206ENST00000543356 NINLQ9Y2I6 1382 aa12.7□□□□□ -0.38
GNE-206ENST00000543356 POGKQ9P215 609 aa12.7□□□□□ -0.38
GNE-206ENST00000543356 KNSTRNQ9Y448 316 aa12.69□□□□□ -0.38
GNE-206ENST00000543356 ERICH6Q7L0X2 663 aa12.69□□□□□ -0.38
GNE-206ENST00000543356 SETD1BQ9UPS6 1966 aaKnown RBP12.68□□□□□ -0.38
GNE-206ENST00000543356 ADGRB2O60241 1585 aa12.68□□□□□ -0.38
GNE-206ENST00000543356 ATAD2Q6PL18 1390 aa12.68□□□□□ -0.38
GNE-206ENST00000543356 AMER1Q5JTC6 1135 aaPredicted RBP12.68□□□□□ -0.38
GNE-206ENST00000543356 PLEKHH1Q9ULM0 1364 aa12.67□□□□□ -0.38
GNE-206ENST00000543356 XRN1Q8IZH2 1706 aaKnown RBP12.67□□□□□ -0.38
GNE-206ENST00000543356 SAFB2Q14151 953 aaKnown RBP eCLIP12.67□□□□□ -0.38
GNE-206ENST00000543356 BCANQ96GW7 911 aa12.67□□□□□ -0.38
GNE-206ENST00000543356 MINK1Q8N4C8 1332 aaPredicted RBP12.66□□□□□ -0.38
GNE-206ENST00000543356 ANKRD36BQ8N2N9 1353 aa12.66□□□□□ -0.38
GNE-206ENST00000543356 NLRP13Q86W25 1043 aa12.66□□□□□ -0.38
GNE-206ENST00000543356 CC2D1BQ5T0F9 858 aaKnown RBP12.66□□□□□ -0.38
GNE-206ENST00000543356 TBX22Q9Y458 520 aa12.66□□□□□ -0.38
GNE-206ENST00000543356 PTCH1Q13635 1447 aa12.65□□□□□ -0.38
GNE-206ENST00000543356 CNGB1Q14028 1251 aaPredicted RBP12.65□□□□□ -0.38
GNE-206ENST00000543356 AEBP2Q6ZN18 517 aaPredicted RBP12.65□□□□□ -0.38
GNE-206ENST00000543356 PTPRUQ92729 1446 aa12.65□□□□□ -0.38
GNE-206ENST00000543356 NSD3Q9BZ95 1437 aa12.65□□□□□ -0.38
GNE-206ENST00000543356 CARD14Q9BXL6 1004 aa12.65□□□□□ -0.39
GNE-206ENST00000543356 CABP2Q9NPB3 220 aa12.65□□□□□ -0.39
GNE-206ENST00000543356 PIK3R4Q99570 1358 aa12.64□□□□□ -0.39
GNE-206ENST00000543356 SRPK2P78362 688 aaKnown RBP12.64□□□□□ -0.39
GNE-206ENST00000543356 WAPLQ7Z5K2 1190 aa12.64□□□□□ -0.39
GNE-206ENST00000543356 ROBO2Q9HCK4 1378 aa12.64□□□□□ -0.39
GNE-206ENST00000543356 TMC1Q8TDI8 760 aa12.63□□□□□ -0.39
GNE-206ENST00000543356 SLC12A5Q9H2X9 1139 aa12.63□□□□□ -0.39
GNE-206ENST00000543356 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.63□□□□□ -0.39
GNE-206ENST00000543356 ATP7BP35670 1465 aa12.62□□□□□ -0.39
GNE-206ENST00000543356 CD163L1Q9NR16 1453 aa12.62□□□□□ -0.39
GNE-206ENST00000543356 CDK19Q9BWU1 502 aa12.62□□□□□ -0.39
GNE-206ENST00000543356 PNISRQ8TF01 805 aaKnown RBP12.62□□□□□ -0.39
GNE-206ENST00000543356 NSD2O96028 1365 aa12.61□□□□□ -0.39
GNE-206ENST00000543356 ANKRD26Q9UPS8 1709 aa12.61□□□□□ -0.39
GNE-206ENST00000543356 FAM9BQ8IZU0 186 aa12.61□□□□□ -0.39
GNE-206ENST00000543356 SLC26A8Q96RN1 970 aa12.61□□□□□ -0.39
GNE-206ENST00000543356 ANP32EQ9BTT0 268 aa12.61□□□□□ -0.39
GNE-206ENST00000543356 ANKLE2Q86XL3 938 aa12.61□□□□□ -0.39
GNE-206ENST00000543356 TOPAZ1Q8N9V7 1692 aa12.6□□□□□ -0.39
GNE-206ENST00000543356 A0A1W2PP64 1363 aa12.6□□□□□ -0.39
GNE-206ENST00000543356 INSRP06213 1382 aa12.6□□□□□ -0.39
GNE-206ENST00000543356 WASLO00401 505 aaPredicted RBP12.6□□□□□ -0.39
GNE-206ENST00000543356 CHD2O14647 1828 aaKnown RBP12.6□□□□□ -0.39
GNE-206ENST00000543356 PPP2R1AP30153 589 aa12.59□□□□□ -0.39
GNE-206ENST00000543356 HNRNPUQ00839 825 aaKnown RBP eCLIP12.59□□□□□ -0.39
GNE-206ENST00000543356 KIF20BQ96Q89 1820 aa12.59□□□□□ -0.39
GNE-206ENST00000543356 CGNL1Q0VF96 1302 aa12.58□□□□□ -0.4
GNE-206ENST00000543356 CDC42BPGQ6DT37 1551 aa12.58□□□□□ -0.4
GNE-206ENST00000543356 TERF2IPQ9NYB0 399 aa12.58□□□□□ -0.4
GNE-206ENST00000543356 AMOTL2Q9Y2J4 779 aa12.58□□□□□ -0.4
GNE-206ENST00000543356 ITSN1Q15811 1721 aa12.58□□□□□ -0.4
GNE-206ENST00000543356 MON2Q7Z3U7 1717 aa12.58□□□□□ -0.4
GNE-206ENST00000543356 NPHP4O75161 1426 aaPredicted RBP12.57□□□□□ -0.4
GNE-206ENST00000543356 AKAP12Q02952 1782 aa12.57□□□□□ -0.4
GNE-206ENST00000543356 PPIP5K1Q6PFW1 1433 aa12.56□□□□□ -0.4
GNE-206ENST00000543356 ZBED9Q6R2W3 1325 aa12.56□□□□□ -0.4
GNE-206ENST00000543356 HDGFL2Q7Z4V5 671 aaPredicted RBP12.56□□□□□ -0.4
GNE-206ENST00000543356 NWD1Q149M9 1564 aa12.55□□□□□ -0.4
GNE-206ENST00000543356 CPSF1Q10570 1443 aaKnown RBP12.55□□□□□ -0.4
GNE-206ENST00000543356 BLMP54132 1417 aaPredicted RBP12.55□□□□□ -0.4
GNE-206ENST00000543356 CABP1Q9NZU7 370 aa12.54□□□□□ -0.4
GNE-206ENST00000543356 NUDT16Q96DE0 195 aaKnown RBP12.53□□□□□ -0.4
GNE-206ENST00000543356 FMN2Q9NZ56 1722 aa12.53□□□□□ -0.4
GNE-206ENST00000543356 NRKQ7Z2Y5 1582 aa12.53□□□□□ -0.4
GNE-206ENST00000543356 MORC1Q86VD1 984 aa12.53□□□□□ -0.4
GNE-206ENST00000543356 EDC4Q6P2E9 1401 aaKnown RBP12.52□□□□□ -0.4
GNE-206ENST00000543356 NALCNQ8IZF0 1738 aa12.52□□□□□ -0.4
GNE-206ENST00000543356 CCDC61Q9Y6R9 512 aa12.52□□□□□ -0.4
GNE-206ENST00000543356 POLR3AO14802 1390 aaPredicted RBP12.52□□□□□ -0.41
GNE-206ENST00000543356 PRR36Q9H6K5 1346 aa12.52□□□□□ -0.41
GNE-206ENST00000543356 SHPRHQ149N8 1683 aa12.51□□□□□ -0.41
GNE-206ENST00000543356 KCNA6P17658 529 aa12.51□□□□□ -0.41
GNE-206ENST00000543356 ANKARQ7Z5J8 1434 aa12.51□□□□□ -0.41
GNE-206ENST00000543356 NKTRP30414 1462 aaKnown RBP12.49□□□□□ -0.41
GNE-206ENST00000543356 FYB1O15117 783 aa12.48□□□□□ -0.41
GNE-206ENST00000543356 NCKAP5LQ9HCH0 1330 aa12.48□□□□□ -0.41
GNE-206ENST00000543356 PLEKHG3A1L390 1219 aa12.48□□□□□ -0.41
GNE-206ENST00000543356 WDR43Q15061 677 aaKnown RBP eCLIP12.47□□□□□ -0.41
GNE-206ENST00000543356 ZNF692Q9BU19 519 aaPredicted RBP12.47□□□□□ -0.41
GNE-206ENST00000543356 RGPD8O14715 1765 aaPredicted RBP12.47□□□□□ -0.41
GNE-206ENST00000543356 KDM4FA0A1W2PPD8 638 aa12.47□□□□□ -0.41
GNE-206ENST00000543356 ADGRL3Q9HAR2 1447 aa12.47□□□□□ -0.41
GNE-206ENST00000543356 GGNBP2Q9H3C7 697 aa12.46□□□□□ -0.42
GNE-206ENST00000543356 LMTK3Q96Q04 1460 aa12.46□□□□□ -0.42
GNE-206ENST00000543356 USP6P35125 1406 aa12.45□□□□□ -0.42
GNE-206ENST00000543356 ADAMTS8Q9UP79 889 aa12.45□□□□□ -0.42
GNE-206ENST00000543356 COL3A1P02461 1466 aaPredicted RBP12.45□□□□□ -0.42
GNE-206ENST00000543356 CFAP53Q96M91 514 aa12.44□□□□□ -0.42
GNE-206ENST00000543356 SSH2Q76I76 1423 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms