RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 ABCC11Q96J66 1382 aa17.86■□□□□ 0.45
VPS33A-207ENST00000542790 PIP4K2BP78356 416 aa17.85■□□□□ 0.45
VPS33A-207ENST00000542790 PTCH1Q13635 1447 aa17.85■□□□□ 0.45
VPS33A-207ENST00000542790 PRAG1Q86YV5 1406 aa17.85■□□□□ 0.45
VPS33A-207ENST00000542790 ROBO2Q9HCK4 1378 aa17.84■□□□□ 0.45
VPS33A-207ENST00000542790 CADPS2Q86UW7 1296 aa17.84■□□□□ 0.45
VPS33A-207ENST00000542790 YTHDC2Q9H6S0 1430 aaKnown RBP17.83■□□□□ 0.45
VPS33A-207ENST00000542790 CLSPNQ9HAW4 1339 aa17.83■□□□□ 0.44
VPS33A-207ENST00000542790 ATF3P18847 181 aa17.83■□□□□ 0.44
VPS33A-207ENST00000542790 SIRT1Q96EB6 747 aa17.83■□□□□ 0.44
VPS33A-207ENST00000542790 XRN1Q8IZH2 1706 aaKnown RBP17.83■□□□□ 0.44
VPS33A-207ENST00000542790 TECPR2O15040 1411 aa17.82■□□□□ 0.44
VPS33A-207ENST00000542790 TONSLQ96HA7 1378 aa17.82■□□□□ 0.44
VPS33A-207ENST00000542790 SETD1AO15047 1707 aaKnown RBP17.81■□□□□ 0.44
VPS33A-207ENST00000542790 MKRN4PQ13434 485 aaPredicted RBP17.81■□□□□ 0.44
VPS33A-207ENST00000542790 SLAIN2Q9P270 581 aa17.81■□□□□ 0.44
VPS33A-207ENST00000542790 ASXL1Q8IXJ9 1541 aa17.79■□□□□ 0.44
VPS33A-207ENST00000542790 WAPLQ7Z5K2 1190 aa17.79■□□□□ 0.44
VPS33A-207ENST00000542790 CCER1Q8TC90 406 aaPredicted RBP17.79■□□□□ 0.44
VPS33A-207ENST00000542790 LAMC1P11047 1609 aa17.79■□□□□ 0.44
VPS33A-207ENST00000542790 ADGRL3Q9HAR2 1447 aa17.78■□□□□ 0.44
VPS33A-207ENST00000542790 TRAK1Q9UPV9 953 aa17.77■□□□□ 0.44
VPS33A-207ENST00000542790 DCCP43146 1447 aa17.77■□□□□ 0.44
VPS33A-207ENST00000542790 FAM135BQ49AJ0 1406 aa17.77■□□□□ 0.44
VPS33A-207ENST00000542790 ADGRB1O14514 1584 aa17.76■□□□□ 0.43
VPS33A-207ENST00000542790 NBPF1Q3BBV0 1214 aa17.76■□□□□ 0.43
VPS33A-207ENST00000542790 POGKQ9P215 609 aa17.76■□□□□ 0.43
VPS33A-207ENST00000542790 XIRP1Q702N8 1843 aaKnown RBP17.75■□□□□ 0.43
VPS33A-207ENST00000542790 PRAM1Q96QH2 718 aa17.75■□□□□ 0.43
VPS33A-207ENST00000542790 TIMELESSQ9UNS1 1208 aa17.74■□□□□ 0.43
VPS33A-207ENST00000542790 PLEKHH1Q9ULM0 1364 aa17.74■□□□□ 0.43
VPS33A-207ENST00000542790 RBM42Q9BTD8 480 aaKnown RBP17.72■□□□□ 0.43
VPS33A-207ENST00000542790 DLC1Q96QB1 1528 aa17.72■□□□□ 0.43
VPS33A-207ENST00000542790 HSPA1LP34931 641 aa17.71■□□□□ 0.43
VPS33A-207ENST00000542790 SAFB2Q14151 953 aaKnown RBP eCLIP17.71■□□□□ 0.43
VPS33A-207ENST00000542790 NBPF8Q3BBV2 869 aa17.71■□□□□ 0.43
VPS33A-207ENST00000542790 MST1RQ04912 1400 aa17.69■□□□□ 0.42
VPS33A-207ENST00000542790 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.69■□□□□ 0.42
VPS33A-207ENST00000542790 ROCK2O75116 1388 aaKnown RBP17.68■□□□□ 0.42
VPS33A-207ENST00000542790 KNDC1Q76NI1 1749 aa17.67■□□□□ 0.42
VPS33A-207ENST00000542790 BRINP3Q76B58 766 aa17.67■□□□□ 0.42
VPS33A-207ENST00000542790 KIAA1210Q9ULL0 1709 aa17.67■□□□□ 0.42
VPS33A-207ENST00000542790 C1orf167Q5SNV9 1468 aa17.65■□□□□ 0.42
VPS33A-207ENST00000542790 MINK1Q8N4C8 1332 aaPredicted RBP17.64■□□□□ 0.41
VPS33A-207ENST00000542790 NALCNQ8IZF0 1738 aa17.64■□□□□ 0.41
VPS33A-207ENST00000542790 CDC42BPGQ6DT37 1551 aa17.63■□□□□ 0.41
VPS33A-207ENST00000542790 HIRIP3Q9BW71 556 aaPredicted RBP17.63■□□□□ 0.41
VPS33A-207ENST00000542790 CARD11Q9BXL7 1154 aa17.63■□□□□ 0.41
VPS33A-207ENST00000542790 GPRASP1Q5JY77 1395 aa17.63■□□□□ 0.41
VPS33A-207ENST00000542790 NUTM2FA1L443 756 aa17.62■□□□□ 0.41
VPS33A-207ENST00000542790 ESCO1Q5FWF5 840 aa17.62■□□□□ 0.41
VPS33A-207ENST00000542790 ORAI2Q96SN7 254 aa17.62■□□□□ 0.41
VPS33A-207ENST00000542790 CENPJQ9HC77 1338 aaPredicted RBP17.62■□□□□ 0.41
VPS33A-207ENST00000542790 WASLO00401 505 aaPredicted RBP17.61■□□□□ 0.41
VPS33A-207ENST00000542790 ROBO1Q9Y6N7 1651 aa17.61■□□□□ 0.41
VPS33A-207ENST00000542790 EIF3AQ14152 1382 aaKnown RBP17.6■□□□□ 0.41
VPS33A-207ENST00000542790 TRPM1Q7Z4N2 1603 aa17.59■□□□□ 0.41
VPS33A-207ENST00000542790 RALGAPBQ86X10 1494 aa17.59■□□□□ 0.41
VPS33A-207ENST00000542790 CDK19Q9BWU1 502 aa17.56■□□□□ 0.4
VPS33A-207ENST00000542790 ANKARQ7Z5J8 1434 aa17.55■□□□□ 0.4
VPS33A-207ENST00000542790 ADGRB2O60241 1585 aa17.55■□□□□ 0.4
VPS33A-207ENST00000542790 PHF8Q9UPP1 1060 aa17.55■□□□□ 0.4
VPS33A-207ENST00000542790 NPHP3Q7Z494 1330 aa17.54■□□□□ 0.4
VPS33A-207ENST00000542790 FOXO3O43524 673 aa17.54■□□□□ 0.4
VPS33A-207ENST00000542790 DDX17Q92841 729 aaKnown RBP17.54■□□□□ 0.4
VPS33A-207ENST00000542790 LRRC59Q96AG4 307 aaKnown RBP17.54■□□□□ 0.4
VPS33A-207ENST00000542790 ARHGEF28Q8N1W1 1705 aaKnown RBP17.54■□□□□ 0.4
VPS33A-207ENST00000542790 NUDT16Q96DE0 195 aaKnown RBP17.53■□□□□ 0.4
VPS33A-207ENST00000542790 AHDC1Q5TGY3 1603 aaPredicted RBP17.53■□□□□ 0.4
VPS33A-207ENST00000542790 JCADQ9P266 1359 aa17.53■□□□□ 0.4
VPS33A-207ENST00000542790 SOS2Q07890 1332 aaPredicted RBP17.52■□□□□ 0.4
VPS33A-207ENST00000542790 SRPK2P78362 688 aaKnown RBP17.52■□□□□ 0.4
VPS33A-207ENST00000542790 EVC2Q86UK5 1308 aa17.51■□□□□ 0.39
VPS33A-207ENST00000542790 PRR36Q9H6K5 1346 aa17.51■□□□□ 0.39
VPS33A-207ENST00000542790 CCDC61Q9Y6R9 512 aa17.51■□□□□ 0.39
VPS33A-207ENST00000542790 FMN2Q9NZ56 1722 aa17.5■□□□□ 0.39
VPS33A-207ENST00000542790 TULP4Q9NRJ4 1543 aa17.5■□□□□ 0.39
VPS33A-207ENST00000542790 SLC24A1O60721 1099 aa17.49■□□□□ 0.39
VPS33A-207ENST00000542790 PSME1Q06323 249 aa17.49■□□□□ 0.39
VPS33A-207ENST00000542790 PMFBP1Q8TBY8 1022 aa17.49■□□□□ 0.39
VPS33A-207ENST00000542790 CABP2Q9NPB3 220 aa17.49■□□□□ 0.39
VPS33A-207ENST00000542790 PHLPP1O60346 1717 aa17.48■□□□□ 0.39
VPS33A-207ENST00000542790 KRT28Q7Z3Y7 464 aa17.48■□□□□ 0.39
VPS33A-207ENST00000542790 SBNO2Q9Y2G9 1366 aa17.48■□□□□ 0.39
VPS33A-207ENST00000542790 ST20-MTHFSA0A0A6YYL1 179 aa17.47■□□□□ 0.39
VPS33A-207ENST00000542790 XPCQ01831 940 aaPredicted RBP17.47■□□□□ 0.39
VPS33A-207ENST00000542790 NGDNQ8NEJ9 315 aaKnown RBP17.47■□□□□ 0.39
VPS33A-207ENST00000542790 AKT1S1Q96B36 256 aa17.47■□□□□ 0.39
VPS33A-207ENST00000542790 COL16A1Q07092 1604 aaPredicted RBP17.47■□□□□ 0.39
VPS33A-207ENST00000542790 SPATA31A6Q5VVP1 1343 aa17.47■□□□□ 0.39
VPS33A-207ENST00000542790 ATP7BP35670 1465 aa17.45■□□□□ 0.38
VPS33A-207ENST00000542790 USP47Q96K76 1375 aa17.45■□□□□ 0.38
VPS33A-207ENST00000542790 PLEKHG3A1L390 1219 aa17.45■□□□□ 0.38
VPS33A-207ENST00000542790 SPDYE2BA6NHP3 402 aa17.45■□□□□ 0.38
VPS33A-207ENST00000542790 SPDYE6P0CI01 402 aa17.45■□□□□ 0.38
VPS33A-207ENST00000542790 SPDYE2Q495Y8 402 aa17.45■□□□□ 0.38
VPS33A-207ENST00000542790 NHSL1Q5SYE7 1610 aa17.45■□□□□ 0.38
VPS33A-207ENST00000542790 PXDNQ92626 1479 aa17.44■□□□□ 0.38
VPS33A-207ENST00000542790 TESK2Q96S53 571 aa17.43■□□□□ 0.38
VPS33A-207ENST00000542790 USP32Q8NFA0 1604 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms