RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.55□□□□□ -0.4
CHMP4A-209ENST00000542700 CCDC9Q9Y3X0 531 aaKnown RBP12.55□□□□□ -0.4
CHMP4A-209ENST00000542700 DISP2A7MBM2 1401 aa12.54□□□□□ -0.4
CHMP4A-209ENST00000542700 CEP350Q5VT06 3117 aa12.54□□□□□ -0.4
CHMP4A-209ENST00000542700 LMTK2Q8IWU2 1503 aa12.54□□□□□ -0.4
CHMP4A-209ENST00000542700 GIGYF1O75420 1035 aaPredicted RBP12.54□□□□□ -0.4
CHMP4A-209ENST00000542700 SPON1Q9HCB6 807 aa12.54□□□□□ -0.4
CHMP4A-209ENST00000542700 ERBINQ96RT1 1412 aa12.54□□□□□ -0.4
CHMP4A-209ENST00000542700 TMEM131LA2VDJ0 1609 aa12.53□□□□□ -0.4
CHMP4A-209ENST00000542700 FAM182BQ5T319 152 aa12.53□□□□□ -0.4
CHMP4A-209ENST00000542700 KIF15Q9NS87 1388 aa12.53□□□□□ -0.4
CHMP4A-209ENST00000542700 TNS1Q9HBL0 1735 aaKnown RBP12.52□□□□□ -0.41
CHMP4A-209ENST00000542700 CHGAP10645 457 aaKnown RBP12.52□□□□□ -0.41
CHMP4A-209ENST00000542700 ONECUT3O60422 494 aaPredicted RBP12.51□□□□□ -0.41
CHMP4A-209ENST00000542700 VPS72Q15906 364 aa12.51□□□□□ -0.41
CHMP4A-209ENST00000542700 KCNQ2O43526 872 aa12.5□□□□□ -0.41
CHMP4A-209ENST00000542700 ADGRB2O60241 1585 aa12.49□□□□□ -0.41
CHMP4A-209ENST00000542700 XPCQ01831 940 aaPredicted RBP12.49□□□□□ -0.41
CHMP4A-209ENST00000542700 CAMKK2Q96RR4 588 aa12.49□□□□□ -0.41
CHMP4A-209ENST00000542700 RRP7BPQ9NSQ0 103 aa12.48□□□□□ -0.41
CHMP4A-209ENST00000542700 PXDNQ92626 1479 aa12.47□□□□□ -0.41
CHMP4A-209ENST00000542700 USP32Q8NFA0 1604 aa12.47□□□□□ -0.41
CHMP4A-209ENST00000542700 PTPN23Q9H3S7 1636 aa12.47□□□□□ -0.41
CHMP4A-209ENST00000542700 NPHP3Q7Z494 1330 aa12.46□□□□□ -0.41
CHMP4A-209ENST00000542700 CAPN15O75808 1086 aa12.46□□□□□ -0.41
CHMP4A-209ENST00000542700 FAM98CQ17RN3 349 aaKnown RBP12.46□□□□□ -0.41
CHMP4A-209ENST00000542700 METP08581 1390 aa12.45□□□□□ -0.42
CHMP4A-209ENST00000542700 CHD4Q14839 1912 aa12.45□□□□□ -0.42
CHMP4A-209ENST00000542700 NRKQ7Z2Y5 1582 aa12.45□□□□□ -0.42
CHMP4A-209ENST00000542700 NUP188Q5SRE5 1749 aa12.45□□□□□ -0.42
CHMP4A-209ENST00000542700 PLCH1Q4KWH8 1693 aa12.45□□□□□ -0.42
CHMP4A-209ENST00000542700 PARD3Q8TEW0 1356 aa12.44□□□□□ -0.42
CHMP4A-209ENST00000542700 NRXN3Q9Y4C0 1643 aa12.44□□□□□ -0.42
CHMP4A-209ENST00000542700 NBPF8Q3BBV2 869 aa12.44□□□□□ -0.42
CHMP4A-209ENST00000542700 NBPF14Q5TI25 921 aa12.44□□□□□ -0.42
CHMP4A-209ENST00000542700 ADGRL2O95490 1459 aa12.44□□□□□ -0.42
CHMP4A-209ENST00000542700 RREB1Q92766 1687 aa12.44□□□□□ -0.42
CHMP4A-209ENST00000542700 TRIM37O94972 964 aa12.43□□□□□ -0.42
CHMP4A-209ENST00000542700 SLC34A2O95436 690 aa12.43□□□□□ -0.42
CHMP4A-209ENST00000542700 APBA3O96018 575 aa12.43□□□□□ -0.42
CHMP4A-209ENST00000542700 HAP1P54257 671 aaPredicted RBP12.42□□□□□ -0.42
CHMP4A-209ENST00000542700 FOXO3O43524 673 aa12.41□□□□□ -0.42
CHMP4A-209ENST00000542700 NWD2Q9ULI1 1742 aa12.41□□□□□ -0.42
CHMP4A-209ENST00000542700 UTRNP46939 3433 aa12.4□□□□□ -0.42
CHMP4A-209ENST00000542700 PLEKHG5O94827 1062 aa12.4□□□□□ -0.42
CHMP4A-209ENST00000542700 ESCO1Q5FWF5 840 aa12.4□□□□□ -0.42
CHMP4A-209ENST00000542700 MYOM1P52179 1685 aa12.4□□□□□ -0.42
CHMP4A-209ENST00000542700 MYOM3Q5VTT5 1437 aa12.38□□□□□ -0.43
CHMP4A-209ENST00000542700 CROCC2H7BZ55 1655 aa12.37□□□□□ -0.43
CHMP4A-209ENST00000542700 CABLES1Q8TDN4 633 aa12.36□□□□□ -0.43
CHMP4A-209ENST00000542700 FHDC1Q9C0D6 1143 aaPredicted RBP12.36□□□□□ -0.43
CHMP4A-209ENST00000542700 SPATA31A3Q5VYP0 1347 aa12.36□□□□□ -0.43
CHMP4A-209ENST00000542700 SYT17Q9BSW7 474 aa12.35□□□□□ -0.43
CHMP4A-209ENST00000542700 LRPPRCP42704 1394 aaKnown RBP12.34□□□□□ -0.43
CHMP4A-209ENST00000542700 ROBO2Q9HCK4 1378 aa12.34□□□□□ -0.43
CHMP4A-209ENST00000542700 ZBTB7AO95365 584 aa12.34□□□□□ -0.43
CHMP4A-209ENST00000542700 HSPA6P17066 643 aa12.34□□□□□ -0.43
CHMP4A-209ENST00000542700 FAM196AQ6ZSG2 479 aa12.34□□□□□ -0.43
CHMP4A-209ENST00000542700 THSD7AQ9UPZ6 1657 aa12.34□□□□□ -0.43
CHMP4A-209ENST00000542700 ABCC5O15440 1437 aa12.34□□□□□ -0.43
CHMP4A-209ENST00000542700 NRAPQ86VF7 1730 aa12.34□□□□□ -0.43
CHMP4A-209ENST00000542700 SHANK3Q9BYB0 1731 aa12.34□□□□□ -0.43
CHMP4A-209ENST00000542700 CASZ1Q86V15 1759 aa12.33□□□□□ -0.44
CHMP4A-209ENST00000542700 DLC1Q96QB1 1528 aa12.32□□□□□ -0.44
CHMP4A-209ENST00000542700 FAM83GA6ND36 823 aa12.32□□□□□ -0.44
CHMP4A-209ENST00000542700 PTGER2P43116 358 aa12.32□□□□□ -0.44
CHMP4A-209ENST00000542700 PDGFDQ9GZP0 370 aaPredicted RBP12.32□□□□□ -0.44
CHMP4A-209ENST00000542700 ATF5Q9Y2D1 282 aaPredicted RBP12.31□□□□□ -0.44
CHMP4A-209ENST00000542700 NUTM2FA1L443 756 aa12.3□□□□□ -0.44
CHMP4A-209ENST00000542700 BTG4Q9NY30 223 aa12.3□□□□□ -0.44
CHMP4A-209ENST00000542700 ABCA3Q99758 1704 aa12.3□□□□□ -0.44
CHMP4A-209ENST00000542700 CDC42BPGQ6DT37 1551 aa12.3□□□□□ -0.44
CHMP4A-209ENST00000542700 IQGAP3Q86VI3 1631 aa12.29□□□□□ -0.44
CHMP4A-209ENST00000542700 CCDC144AA2RUR9 1427 aa12.29□□□□□ -0.44
CHMP4A-209ENST00000542700 NEXMIFQ5QGS0 1516 aa12.29□□□□□ -0.44
CHMP4A-209ENST00000542700 PRELPP51888 382 aa12.29□□□□□ -0.44
CHMP4A-209ENST00000542700 GPR162Q16538 588 aa12.29□□□□□ -0.44
CHMP4A-209ENST00000542700 COL13A1Q5TAT6 717 aaPredicted RBP12.29□□□□□ -0.44
CHMP4A-209ENST00000542700 ANO8Q9HCE9 1232 aaPredicted RBP12.29□□□□□ -0.44
CHMP4A-209ENST00000542700 SPATA31A5Q5VU36 1347 aa12.29□□□□□ -0.44
CHMP4A-209ENST00000542700 SPATA31A7Q8IWB4 1347 aa12.29□□□□□ -0.44
CHMP4A-209ENST00000542700 TNS3Q68CZ2 1445 aa12.28□□□□□ -0.44
CHMP4A-209ENST00000542700 CHIC2Q9UKJ5 165 aa12.28□□□□□ -0.44
CHMP4A-209ENST00000542700 ANKRD30AQ9BXX3 1397 aa12.28□□□□□ -0.44
CHMP4A-209ENST00000542700 DAPK1P53355 1430 aa12.28□□□□□ -0.44
CHMP4A-209ENST00000542700 ZNF326Q5BKZ1 582 aaKnown RBP12.27□□□□□ -0.45
CHMP4A-209ENST00000542700 LMOD2Q6P5Q4 547 aa12.26□□□□□ -0.45
CHMP4A-209ENST00000542700 KRT28Q7Z3Y7 464 aa12.26□□□□□ -0.45
CHMP4A-209ENST00000542700 HFM1A2PYH4 1435 aa12.26□□□□□ -0.45
CHMP4A-209ENST00000542700 E9PCH4 1651 aa12.26□□□□□ -0.45
CHMP4A-209ENST00000542700 PELP1Q8IZL8 1130 aaKnown RBP12.25□□□□□ -0.45
CHMP4A-209ENST00000542700 TNS4Q8IZW8 715 aa12.25□□□□□ -0.45
CHMP4A-209ENST00000542700 PCDH10Q9P2E7 1040 aa12.24□□□□□ -0.45
CHMP4A-209ENST00000542700 KIF1AQ12756 1690 aa12.23□□□□□ -0.45
CHMP4A-209ENST00000542700 COL14A1Q05707 1796 aaKnown RBP12.23□□□□□ -0.45
CHMP4A-209ENST00000542700 NAIPQ13075 1403 aa12.22□□□□□ -0.45
CHMP4A-209ENST00000542700 ATP10DQ9P241 1426 aa12.22□□□□□ -0.45
CHMP4A-209ENST00000542700 RRBP1Q9P2E9 1410 aaKnown RBP12.22□□□□□ -0.45
CHMP4A-209ENST00000542700 PRAG1Q86YV5 1406 aa12.21□□□□□ -0.45
CHMP4A-209ENST00000542700 ARHGEF10O15013 1369 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms