RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 USP47Q96K76 1375 aa24.16■■□□□ 1.46
LIG1-204ENST00000542460 ARHGEF28Q8N1W1 1705 aaKnown RBP24.15■■□□□ 1.46
LIG1-204ENST00000542460 C19orf44Q9H6X5 657 aa24.15■■□□□ 1.46
LIG1-204ENST00000542460 EIF4G2P78344 907 aaKnown RBP eCLIP24.13■■□□□ 1.451e-11■■■■■ 55.3
LIG1-204ENST00000542460 ADGRL3Q9HAR2 1447 aa24.12■■□□□ 1.45
LIG1-204ENST00000542460 ST20-MTHFSA0A0A6YYL1 179 aa24.12■■□□□ 1.45
LIG1-204ENST00000542460 MSH6P52701 1360 aa24.11■■□□□ 1.45
LIG1-204ENST00000542460 MINK1Q8N4C8 1332 aaPredicted RBP24.1■■□□□ 1.45
LIG1-204ENST00000542460 SCAF1Q9H7N4 1312 aaKnown RBP24.08■■□□□ 1.45
LIG1-204ENST00000542460 HIRIP3Q9BW71 556 aaPredicted RBP24.08■■□□□ 1.45
LIG1-204ENST00000542460 XIRP1Q702N8 1843 aaKnown RBP24.08■■□□□ 1.44
LIG1-204ENST00000542460 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.08■■□□□ 1.44
LIG1-204ENST00000542460 SBNO2Q9Y2G9 1366 aa24.07■■□□□ 1.44
LIG1-204ENST00000542460 SLC24A1O60721 1099 aa24.07■■□□□ 1.44
LIG1-204ENST00000542460 TOM1O60784 492 aa24.07■■□□□ 1.44
LIG1-204ENST00000542460 ATF3P18847 181 aa24.07■■□□□ 1.44
LIG1-204ENST00000542460 HSPA5P11021 654 aaKnown RBP24.06■■□□□ 1.44
LIG1-204ENST00000542460 CADPS2Q86UW7 1296 aa24.06■■□□□ 1.44
LIG1-204ENST00000542460 DCCP43146 1447 aa24.06■■□□□ 1.44
LIG1-204ENST00000542460 PIP4K2BP78356 416 aa24.05■■□□□ 1.44
LIG1-204ENST00000542460 TESK2Q96S53 571 aa24.05■■□□□ 1.44
LIG1-204ENST00000542460 NALCNQ8IZF0 1738 aa24.04■■□□□ 1.44
LIG1-204ENST00000542460 WASLO00401 505 aaPredicted RBP24.04■■□□□ 1.44
LIG1-204ENST00000542460 QRICH2Q9H0J4 1663 aa24.03■■□□□ 1.44
LIG1-204ENST00000542460 ADGRB2O60241 1585 aa24.01■■□□□ 1.43
LIG1-204ENST00000542460 CDC42BPGQ6DT37 1551 aa24.01■■□□□ 1.43
LIG1-204ENST00000542460 EVC2Q86UK5 1308 aa24.01■■□□□ 1.43
LIG1-204ENST00000542460 CDK19Q9BWU1 502 aa24■■□□□ 1.43
LIG1-204ENST00000542460 DISP3Q9P2K9 1392 aa23.97■■□□□ 1.43
LIG1-204ENST00000542460 TMF1P82094 1093 aa23.97■■□□□ 1.43
LIG1-204ENST00000542460 SLAIN2Q9P270 581 aa23.97■■□□□ 1.43
LIG1-204ENST00000542460 SRPK2P78362 688 aaKnown RBP23.96■■□□□ 1.43
LIG1-204ENST00000542460 TULP4Q9NRJ4 1543 aa23.95■■□□□ 1.42
LIG1-204ENST00000542460 MST1RQ04912 1400 aa23.95■■□□□ 1.42
LIG1-204ENST00000542460 NUTM2FA1L443 756 aa23.94■■□□□ 1.42
LIG1-204ENST00000542460 CABP2Q9NPB3 220 aa23.94■■□□□ 1.42
LIG1-204ENST00000542460 HSPA1LP34931 641 aa23.93■■□□□ 1.42
LIG1-204ENST00000542460 CDCA8Q53HL2 280 aa23.92■■□□□ 1.42
LIG1-204ENST00000542460 NUDT16Q96DE0 195 aaKnown RBP23.92■■□□□ 1.42
LIG1-204ENST00000542460 PUS7Q96PZ0 661 aaKnown RBP23.92■■□□□ 1.42
LIG1-204ENST00000542460 ANKARQ7Z5J8 1434 aa23.92■■□□□ 1.42
LIG1-204ENST00000542460 C1orf167Q5SNV9 1468 aa23.91■■□□□ 1.42
LIG1-204ENST00000542460 FMN2Q9NZ56 1722 aa23.91■■□□□ 1.42
LIG1-204ENST00000542460 PRR36Q9H6K5 1346 aa23.9■■□□□ 1.42
LIG1-204ENST00000542460 CCDC61Q9Y6R9 512 aa23.89■■□□□ 1.41
LIG1-204ENST00000542460 ESCO1Q5FWF5 840 aa23.88■■□□□ 1.41
LIG1-204ENST00000542460 ATP7BP35670 1465 aa23.87■■□□□ 1.41
LIG1-204ENST00000542460 ATAD2Q6PL18 1390 aa23.87■■□□□ 1.41
LIG1-204ENST00000542460 ORAI2Q96SN7 254 aa23.87■■□□□ 1.41
LIG1-204ENST00000542460 BRINP3Q76B58 766 aa23.84■■□□□ 1.41
LIG1-204ENST00000542460 USP32Q8NFA0 1604 aa23.84■■□□□ 1.41
LIG1-204ENST00000542460 C11orf95C9JLR9 678 aaPredicted RBP23.84■■□□□ 1.41
LIG1-204ENST00000542460 PHF8Q9UPP1 1060 aa23.83■■□□□ 1.41
LIG1-204ENST00000542460 PLEKHG3A1L390 1219 aa23.81■■□□□ 1.4
LIG1-204ENST00000542460 CABP1Q9NZU7 370 aa23.81■■□□□ 1.4
LIG1-204ENST00000542460 PPIP5K1Q6PFW1 1433 aa23.8■■□□□ 1.4
LIG1-204ENST00000542460 PMFBP1Q8TBY8 1022 aa23.8■■□□□ 1.4
LIG1-204ENST00000542460 TMC1Q8TDI8 760 aa23.79■■□□□ 1.4
LIG1-204ENST00000542460 POLR3GLQ9BT43 218 aa23.79■■□□□ 1.4
LIG1-204ENST00000542460 KIF7Q2M1P5 1343 aa23.78■■□□□ 1.4
LIG1-204ENST00000542460 NINLQ9Y2I6 1382 aa23.77■■□□□ 1.4
LIG1-204ENST00000542460 FOXO3O43524 673 aa23.77■■□□□ 1.4
LIG1-204ENST00000542460 NGDNQ8NEJ9 315 aaKnown RBP23.77■■□□□ 1.4
LIG1-204ENST00000542460 RGPD8O14715 1765 aaPredicted RBP23.76■■□□□ 1.39
LIG1-204ENST00000542460 ROBO1Q9Y6N7 1651 aa23.76■■□□□ 1.39
LIG1-204ENST00000542460 ILDR2Q71H61 639 aa23.76■■□□□ 1.39
LIG1-204ENST00000542460 SLC12A5Q9H2X9 1139 aa23.76■■□□□ 1.39
LIG1-204ENST00000542460 ITSN1Q15811 1721 aa23.76■■□□□ 1.39
LIG1-204ENST00000542460 TOPAZ1Q8N9V7 1692 aa23.76■■□□□ 1.39
LIG1-204ENST00000542460 MED1Q15648 1581 aaPredicted RBP23.76■■□□□ 1.39
LIG1-204ENST00000542460 ACEP12821 1306 aa23.75■■□□□ 1.39
LIG1-204ENST00000542460 WASHC2AQ641Q2 1341 aa23.74■■□□□ 1.39
LIG1-204ENST00000542460 NPHP3Q7Z494 1330 aa23.74■■□□□ 1.39
LIG1-204ENST00000542460 POLR3AO14802 1390 aaPredicted RBP23.74■■□□□ 1.39
LIG1-204ENST00000542460 CCDC7Q96M83 1385 aa23.74■■□□□ 1.39
LIG1-204ENST00000542460 KIF1AQ12756 1690 aa23.74■■□□□ 1.39
LIG1-204ENST00000542460 PSME1Q06323 249 aa23.73■■□□□ 1.39
LIG1-204ENST00000542460 DDX17Q92841 729 aaKnown RBP23.72■■□□□ 1.39
LIG1-204ENST00000542460 ZNF692Q9BU19 519 aaPredicted RBP23.72■■□□□ 1.39
LIG1-204ENST00000542460 TERF2IPQ9NYB0 399 aa23.72■■□□□ 1.39
LIG1-204ENST00000542460 HDGFL2Q7Z4V5 671 aaPredicted RBP23.7■■□□□ 1.38
LIG1-204ENST00000542460 KRT28Q7Z3Y7 464 aa23.69■■□□□ 1.38
LIG1-204ENST00000542460 CPSF1Q10570 1443 aaKnown RBP23.68■■□□□ 1.38
LIG1-204ENST00000542460 ZNF316A6NFI3 1004 aaPredicted RBP23.68■■□□□ 1.38
LIG1-204ENST00000542460 SOS2Q07890 1332 aaPredicted RBP23.68■■□□□ 1.38
LIG1-204ENST00000542460 XPCQ01831 940 aaPredicted RBP23.67■■□□□ 1.38
LIG1-204ENST00000542460 AHDC1Q5TGY3 1603 aaPredicted RBP23.67■■□□□ 1.38
LIG1-204ENST00000542460 CD163L1Q9NR16 1453 aa23.66■■□□□ 1.38
LIG1-204ENST00000542460 ANKRD36BQ8N2N9 1353 aa23.66■■□□□ 1.38
LIG1-204ENST00000542460 NHSL1Q5SYE7 1610 aa23.66■■□□□ 1.38
LIG1-204ENST00000542460 A0A1W2PP64 1363 aa23.65■■□□□ 1.38
LIG1-204ENST00000542460 KTN1Q86UP2 1357 aaKnown RBP23.65■■□□□ 1.38
LIG1-204ENST00000542460 PXDNQ92626 1479 aa23.64■■□□□ 1.37
LIG1-204ENST00000542460 USP6P35125 1406 aa23.64■■□□□ 1.37
LIG1-204ENST00000542460 BRD4O60885 1362 aaPredicted RBP23.64■■□□□ 1.37
LIG1-204ENST00000542460 MYOM1P52179 1685 aa23.63■■□□□ 1.37
LIG1-204ENST00000542460 LRRC59Q96AG4 307 aaKnown RBP23.63■■□□□ 1.37
LIG1-204ENST00000542460 PANK3Q9H999 370 aa23.62■■□□□ 1.37
LIG1-204ENST00000542460 SBNO1A3KN83 1393 aa23.61■■□□□ 1.37
LIG1-204ENST00000542460 PHF23Q9BUL5 403 aaPredicted RBP23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms