RNA–Protein interactions for RNA: ENST00000541578.5

SNHG1-217, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 3 BASIC

Gene SNHG1, Length 588 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-217ENST00000541578 PCDHGC3Q9UN70 934 aa8.89□□□□□ -0.99
SNHG1-217ENST00000541578 GJA5P36382 358 aa8.88□□□□□ -0.99
SNHG1-217ENST00000541578 SLC19A1P41440 591 aa8.88□□□□□ -0.99
SNHG1-217ENST00000541578 SYMPKQ92797 1274 aaKnown RBP8.88□□□□□ -0.99
SNHG1-217ENST00000541578 KDM4CQ9H3R0 1056 aa8.88□□□□□ -0.99
SNHG1-217ENST00000541578 C6orf229H3BNL8 230 aa8.87□□□□□ -0.99
SNHG1-217ENST00000541578 PRDM9Q9NQV7 894 aa8.87□□□□□ -0.99
SNHG1-217ENST00000541578 SPTLC1O15269 473 aa8.86□□□□□ -0.99
SNHG1-217ENST00000541578 RSBN1LQ6PCB5 846 aaPredicted RBP8.86□□□□□ -0.99
SNHG1-217ENST00000541578 RIC3Q7Z5B4 369 aa8.86□□□□□ -0.99
SNHG1-217ENST00000541578 RETREG3Q86VR2 466 aa8.86□□□□□ -0.99
SNHG1-217ENST00000541578 RSPH6AQ9H0K4 717 aa8.86□□□□□ -0.99
SNHG1-217ENST00000541578 MMP16P51512 607 aa8.85□□□□□ -0.99
SNHG1-217ENST00000541578 FCF1Q9Y324 198 aaKnown RBP8.85□□□□□ -0.99
SNHG1-217ENST00000541578 SPDYE5A6NIY4 337 aa8.84□□□□□ -0.99
SNHG1-217ENST00000541578 DXOO77932 396 aaKnown RBP8.84□□□□□ -0.99
SNHG1-217ENST00000541578 MYSM1Q5VVJ2 828 aa8.84□□□□□ -0.99
SNHG1-217ENST00000541578 LIAT1Q6ZQX7 453 aa8.84□□□□□ -0.99
SNHG1-217ENST00000541578 DDRGK1Q96HY6 314 aa8.84□□□□□ -0.99
SNHG1-217ENST00000541578 PCDHB15Q9Y5E8 787 aa8.84□□□□□ -0.99
SNHG1-217ENST00000541578 MTMR2Q13614 643 aa8.83□□□□□ -1
SNHG1-217ENST00000541578 EMID1Q96A84 441 aaPredicted RBP8.83□□□□□ -1
SNHG1-217ENST00000541578 IRX2Q9BZI1 471 aaPredicted RBP8.83□□□□□ -1
SNHG1-217ENST00000541578 FAM117AQ9C073 453 aa8.83□□□□□ -1
SNHG1-217ENST00000541578 JUNDP17535 347 aa8.82□□□□□ -1
SNHG1-217ENST00000541578 NEUROD2Q15784 382 aa8.82□□□□□ -1
SNHG1-217ENST00000541578 PLA2G2CQ5R387 149 aa8.82□□□□□ -1
SNHG1-217ENST00000541578 SPRYD7Q5W111 196 aa8.81□□□□□ -1
SNHG1-217ENST00000541578 RPIAP49247 311 aa8.8□□□□□ -1
SNHG1-217ENST00000541578 CSPP1Q1MSJ5 1256 aa8.8□□□□□ -1
SNHG1-217ENST00000541578 PRPF38BQ5VTL8 546 aaKnown RBP8.8□□□□□ -1
SNHG1-217ENST00000541578 PRR7Q8TB68 274 aa8.8□□□□□ -1
SNHG1-217ENST00000541578 ZBTB3Q9H5J0 574 aa8.8□□□□□ -1
SNHG1-217ENST00000541578 POLR3EQ9NVU0 708 aa8.8□□□□□ -1
SNHG1-217ENST00000541578 LIMD1Q9UGP4 676 aa8.8□□□□□ -1
SNHG1-217ENST00000541578 ZBTB24O43167 697 aaPredicted RBP8.79□□□□□ -1
SNHG1-217ENST00000541578 CD2BP2O95400 341 aaKnown RBP8.79□□□□□ -1
SNHG1-217ENST00000541578 HRCP23327 699 aa8.79□□□□□ -1
SNHG1-217ENST00000541578 TUSC1Q2TAM9 212 aa8.79□□□□□ -1
SNHG1-217ENST00000541578 ZNF598Q86UK7 904 aaKnown RBP8.79□□□□□ -1
SNHG1-217ENST00000541578 CCDC24Q8N4L8 307 aa8.79□□□□□ -1
SNHG1-217ENST00000541578 PRKCSHP14314 528 aaPredicted RBP8.78□□□□□ -1
SNHG1-217ENST00000541578 CLK2P49760 499 aaKnown RBP8.78□□□□□ -1
SNHG1-217ENST00000541578 CABLES1Q8TDN4 633 aa8.78□□□□□ -1
SNHG1-217ENST00000541578 PLEKHG3A1L390 1219 aa8.77□□□□□ -1.01
SNHG1-217ENST00000541578 NUTM2BA6NNL0 878 aaPredicted RBP8.77□□□□□ -1.01
SNHG1-217ENST00000541578 NUTM2EB1AL46 878 aaPredicted RBP8.77□□□□□ -1.01
SNHG1-217ENST00000541578 BRPF1P55201 1214 aaPredicted RBP8.77□□□□□ -1.01
SNHG1-217ENST00000541578 SKIV2LQ15477 1246 aaKnown RBP8.77□□□□□ -1.01
SNHG1-217ENST00000541578 ZNF697Q5TEC3 545 aa8.77□□□□□ -1.01
SNHG1-217ENST00000541578 NUTM2DQ5VT03 806 aaPredicted RBP8.77□□□□□ -1.01
SNHG1-217ENST00000541578 DESI1Q6ICB0 168 aa8.77□□□□□ -1.01
SNHG1-217ENST00000541578 NUTM2AQ8IVF1 878 aaPredicted RBP8.77□□□□□ -1.01
SNHG1-217ENST00000541578 GFRA3O60609 400 aa8.76□□□□□ -1.01
SNHG1-217ENST00000541578 LAPTM4AQ15012 233 aa8.76□□□□□ -1.01
SNHG1-217ENST00000541578 SH3D19Q5HYK7 790 aa8.76□□□□□ -1.01
SNHG1-217ENST00000541578 PDZRN3Q9UPQ7 1066 aa8.76□□□□□ -1.01
SNHG1-217ENST00000541578 LILRB3O75022 631 aa8.75□□□□□ -1.01
SNHG1-217ENST00000541578 QPCTQ16769 361 aa8.75□□□□□ -1.01
SNHG1-217ENST00000541578 NUDT12Q9BQG2 462 aa8.75□□□□□ -1.01
SNHG1-217ENST00000541578 ATP1B4Q9UN42 357 aaPredicted RBP8.75□□□□□ -1.01
SNHG1-217ENST00000541578 CFAP99D6REC4 459 aa8.74□□□□□ -1.01
SNHG1-217ENST00000541578 PTPRNQ16849 979 aa8.74□□□□□ -1.01
SNHG1-217ENST00000541578 CCNYL3P0C7X3 344 aa8.73□□□□□ -1.01
SNHG1-217ENST00000541578 PROCA1Q8NCQ7 364 aaPredicted RBP8.73□□□□□ -1.01
SNHG1-217ENST00000541578 IL27Q8NEV9 243 aa8.73□□□□□ -1.01
SNHG1-217ENST00000541578 TRIM32Q13049 653 aa8.72□□□□□ -1.01
SNHG1-217ENST00000541578 RTL5Q5HYW3 569 aaPredicted RBP8.72□□□□□ -1.01
SNHG1-217ENST00000541578 LYPD8Q6UX82 237 aa8.72□□□□□ -1.01
SNHG1-217ENST00000541578 NRG2O14511 850 aaPredicted RBP8.71□□□□□ -1.02
SNHG1-217ENST00000541578 FOXC1Q12948 553 aa8.71□□□□□ -1.02
SNHG1-217ENST00000541578 PTCRAQ6ISU1 281 aaPredicted RBP8.71□□□□□ -1.02
SNHG1-217ENST00000541578 TRIM67Q6ZTA4 783 aa8.71□□□□□ -1.02
SNHG1-217ENST00000541578 TSC1Q92574 1164 aa8.71□□□□□ -1.02
SNHG1-217ENST00000541578 EVA1BQ9NVM1 165 aa8.71□□□□□ -1.02
SNHG1-217ENST00000541578 PRR20EP86478 221 aa8.7□□□□□ -1.02
SNHG1-217ENST00000541578 PRR20CP86479 221 aa8.7□□□□□ -1.02
SNHG1-217ENST00000541578 PRR20DP86480 221 aa8.7□□□□□ -1.02
SNHG1-217ENST00000541578 PRR20BP86481 221 aa8.7□□□□□ -1.02
SNHG1-217ENST00000541578 PRR20AP86496 221 aa8.7□□□□□ -1.02
SNHG1-217ENST00000541578 GDF9O60383 454 aa8.69□□□□□ -1.02
SNHG1-217ENST00000541578 KCNH2Q12809 1159 aa8.69□□□□□ -1.02
SNHG1-217ENST00000541578 HELBQ8NG08 1087 aaPredicted RBP8.69□□□□□ -1.02
SNHG1-217ENST00000541578 GOPCQ9HD26 462 aa8.69□□□□□ -1.02
SNHG1-217ENST00000541578 PKD2L1Q9P0L9 805 aa8.69□□□□□ -1.02
SNHG1-217ENST00000541578 TNFRSF10AO00220 468 aa8.68□□□□□ -1.02
SNHG1-217ENST00000541578 CTHP32929 405 aa8.68□□□□□ -1.02
SNHG1-217ENST00000541578 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.68□□□□□ -1.02
SNHG1-217ENST00000541578 WNT7BP56706 349 aa8.67□□□□□ -1.02
SNHG1-217ENST00000541578 Q6ZNB5 142 aa8.67□□□□□ -1.02
SNHG1-217ENST00000541578 PCMTD1Q96MG8 357 aaPredicted RBP8.67□□□□□ -1.02
SNHG1-217ENST00000541578 WNT7AO00755 349 aa8.66□□□□□ -1.02
SNHG1-217ENST00000541578 PER1O15534 1290 aaPredicted RBP8.66□□□□□ -1.02
SNHG1-217ENST00000541578 PPP2R2DQ66LE6 453 aa8.66□□□□□ -1.02
SNHG1-217ENST00000541578 UNC93B1Q9H1C4 597 aa8.66□□□□□ -1.02
SNHG1-217ENST00000541578 SKOR1P84550 965 aa8.64□□□□□ -1.03
SNHG1-217ENST00000541578 RC3H1Q5TC82 1133 aaKnown RBP8.64□□□□□ -1.03
SNHG1-217ENST00000541578 CYP4X1Q8N118 509 aa8.64□□□□□ -1.03
SNHG1-217ENST00000541578 F12P00748 615 aaPredicted RBP8.63□□□□□ -1.03
SNHG1-217ENST00000541578 CTDSPL2Q05D32 466 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms