RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 CLASP1Q7Z460 1538 aa16.08■□□□□ 0.17
SFSWAP-209ENST00000540469 RSPH4AQ5TD94 716 aa16.08■□□□□ 0.16
SFSWAP-209ENST00000540469 PDCL3Q9H2J4 239 aa16.08■□□□□ 0.16
SFSWAP-209ENST00000540469 CHD1O14646 1710 aa16.08■□□□□ 0.16
SFSWAP-209ENST00000540469 CCDC141Q6ZP82 1450 aa16.08■□□□□ 0.16
SFSWAP-209ENST00000540469 NUP160Q12769 1436 aa16.07■□□□□ 0.16
SFSWAP-209ENST00000540469 PLA2R1Q13018 1463 aa16.07■□□□□ 0.16
SFSWAP-209ENST00000540469 FAM13BQ9NYF5 915 aa16.07■□□□□ 0.16
SFSWAP-209ENST00000540469 DDX49Q9Y6V7 483 aaKnown RBP16.07■□□□□ 0.16
SFSWAP-209ENST00000540469 ABCC2Q92887 1545 aa16.07■□□□□ 0.16
SFSWAP-209ENST00000540469 CDC42BPAQ5VT25 1732 aa16.06■□□□□ 0.16
SFSWAP-209ENST00000540469 CCDC173Q0VFZ6 552 aa16.06■□□□□ 0.16
SFSWAP-209ENST00000540469 PTMSP20962 102 aa16.05■□□□□ 0.16
SFSWAP-209ENST00000540469 CFAP53Q96M91 514 aa16.05■□□□□ 0.16
SFSWAP-209ENST00000540469 LNPKQ9C0E8 428 aa16.05■□□□□ 0.16
SFSWAP-209ENST00000540469 ZSCAN30Q86W11 494 aa16.04■□□□□ 0.16
SFSWAP-209ENST00000540469 R3HCC1Q9Y3T6 440 aaKnown RBP16.04■□□□□ 0.16
SFSWAP-209ENST00000540469 ADCY10Q96PN6 1610 aa16.03■□□□□ 0.16
SFSWAP-209ENST00000540469 U2AF1L5P0DN76 240 aaPredicted RBP16.03■□□□□ 0.16
SFSWAP-209ENST00000540469 U2AF1Q01081 240 aaKnown RBP eCLIP16.03■□□□□ 0.165e-8■■■□□ 18.1
SFSWAP-209ENST00000540469 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.03■□□□□ 0.16
SFSWAP-209ENST00000540469 ZMYM3Q14202 1370 aa16.02■□□□□ 0.16
SFSWAP-209ENST00000540469 TSR2Q969E8 191 aaKnown RBP16.02■□□□□ 0.16
SFSWAP-209ENST00000540469 WDR63Q8IWG1 891 aa16.02■□□□□ 0.15
SFSWAP-209ENST00000540469 CIZ1Q9ULV3 898 aaPredicted RBP16.02■□□□□ 0.15
SFSWAP-209ENST00000540469 DDX19BQ9UMR2 479 aa16.02■□□□□ 0.15
SFSWAP-209ENST00000540469 SCAF11Q99590 1463 aaKnown RBP16.01■□□□□ 0.15
SFSWAP-209ENST00000540469 CARD14Q9BXL6 1004 aa16.01■□□□□ 0.15
SFSWAP-209ENST00000540469 LAMC1P11047 1609 aa16.01■□□□□ 0.15
SFSWAP-209ENST00000540469 NPC1L1Q9UHC9 1359 aa16.01■□□□□ 0.15
SFSWAP-209ENST00000540469 ABCC10Q5T3U5 1492 aa16■□□□□ 0.15
SFSWAP-209ENST00000540469 ZNF692Q9BU19 519 aaPredicted RBP15.99■□□□□ 0.15
SFSWAP-209ENST00000540469 SYNMO15061 1565 aa15.99■□□□□ 0.15
SFSWAP-209ENST00000540469 SSFA2P28290 1259 aa15.99■□□□□ 0.15
SFSWAP-209ENST00000540469 RAB3GAP1Q15042 981 aa15.99■□□□□ 0.15
SFSWAP-209ENST00000540469 ATP10BO94823 1461 aa15.99■□□□□ 0.15
SFSWAP-209ENST00000540469 MTHFSP49914 203 aa15.98■□□□□ 0.15
SFSWAP-209ENST00000540469 CALD1Q05682 793 aaKnown RBP15.98■□□□□ 0.15
SFSWAP-209ENST00000540469 CFAP70Q5T0N1 1121 aa15.98■□□□□ 0.15
SFSWAP-209ENST00000540469 SMC5Q8IY18 1101 aa15.98■□□□□ 0.15
SFSWAP-209ENST00000540469 U2SURPO15042 1029 aaKnown RBP15.98■□□□□ 0.15
SFSWAP-209ENST00000540469 SLC24A1O60721 1099 aa15.98■□□□□ 0.15
SFSWAP-209ENST00000540469 EXOSC9Q06265 439 aaKnown RBP15.97■□□□□ 0.15
SFSWAP-209ENST00000540469 MYO5CQ9NQX4 1742 aa15.97■□□□□ 0.15
SFSWAP-209ENST00000540469 TRIM27P14373 513 aa15.97■□□□□ 0.15
SFSWAP-209ENST00000540469 SNX21Q969T3 373 aa15.97■□□□□ 0.15
SFSWAP-209ENST00000540469 ZBTB7CA1YPR0 619 aa15.97■□□□□ 0.15
SFSWAP-209ENST00000540469 K7ELQ4 463 aaPredicted RBP15.96■□□□□ 0.15
SFSWAP-209ENST00000540469 OFD1O75665 1012 aa15.96■□□□□ 0.15
SFSWAP-209ENST00000540469 MCTP1Q6DN14 999 aa15.96■□□□□ 0.15
SFSWAP-209ENST00000540469 CAVIN1Q6NZI2 390 aaKnown RBP15.96■□□□□ 0.15
SFSWAP-209ENST00000540469 CHGAP10645 457 aaKnown RBP15.96■□□□□ 0.15
SFSWAP-209ENST00000540469 ANKRD45Q5TZF3 282 aa15.96■□□□□ 0.15
SFSWAP-209ENST00000540469 POLR3AO14802 1390 aaPredicted RBP15.96■□□□□ 0.15
SFSWAP-209ENST00000540469 SCAPERQ9BY12 1400 aa15.96■□□□□ 0.15
SFSWAP-209ENST00000540469 HDAC1Q13547 482 aaPredicted RBP15.95■□□□□ 0.14
SFSWAP-209ENST00000540469 PRDM10Q9NQV6 1147 aa15.95■□□□□ 0.14
SFSWAP-209ENST00000540469 RBM25P49756 843 aaKnown RBP15.95■□□□□ 0.14
SFSWAP-209ENST00000540469 ATF7IPQ6VMQ6 1270 aa15.95■□□□□ 0.14
SFSWAP-209ENST00000540469 RBM42Q9BTD8 480 aaKnown RBP15.95■□□□□ 0.14
SFSWAP-209ENST00000540469 NPM1P06748 294 aaKnown RBP eCLIP15.94■□□□□ 0.14
SFSWAP-209ENST00000540469 NOB1Q9ULX3 412 aaKnown RBP15.94■□□□□ 0.14
SFSWAP-209ENST00000540469 ARHGEF5Q12774 1597 aa15.94■□□□□ 0.14
SFSWAP-209ENST00000540469 ARHGAP5Q13017 1502 aa15.94■□□□□ 0.14
SFSWAP-209ENST00000540469 XPCQ01831 940 aaPredicted RBP15.94■□□□□ 0.14
SFSWAP-209ENST00000540469 RTEL1-TNFRSF6BF6WH68 1400 aa15.94■□□□□ 0.14
SFSWAP-209ENST00000540469 SYCP2Q9BX26 1530 aa15.94■□□□□ 0.14
SFSWAP-209ENST00000540469 TMEM57Q8N5G2 664 aa15.94■□□□□ 0.14
SFSWAP-209ENST00000540469 SSH1Q8WYL5 1049 aa15.94■□□□□ 0.14
SFSWAP-209ENST00000540469 ZHX1Q9UKY1 873 aaPredicted RBP15.94■□□□□ 0.14
SFSWAP-209ENST00000540469 UQCRHLA0A096LP55 91 aa15.93■□□□□ 0.14
SFSWAP-209ENST00000540469 UQCRHP07919 91 aa15.93■□□□□ 0.14
SFSWAP-209ENST00000540469 SLC12A5Q9H2X9 1139 aa15.93■□□□□ 0.14
SFSWAP-209ENST00000540469 PLXNC1O60486 1568 aa15.93■□□□□ 0.14
SFSWAP-209ENST00000540469 NSD3Q9BZ95 1437 aa15.93■□□□□ 0.14
SFSWAP-209ENST00000540469 IPO8O15397 1037 aaKnown RBP15.92■□□□□ 0.14
SFSWAP-209ENST00000540469 CHD1LQ86WJ1 897 aa15.92■□□□□ 0.14
SFSWAP-209ENST00000540469 PTMAP06454 111 aaKnown RBP15.92■□□□□ 0.14
SFSWAP-209ENST00000540469 KLHL40Q2TBA0 621 aa15.92■□□□□ 0.14
SFSWAP-209ENST00000540469 PPP1R9BQ96SB3 815 aa15.92■□□□□ 0.14
SFSWAP-209ENST00000540469 MAP7D2Q96T17 732 aa15.92■□□□□ 0.14
SFSWAP-209ENST00000540469 CD2BP2O95400 341 aaKnown RBP15.91■□□□□ 0.14
SFSWAP-209ENST00000540469 BAG4O95429 457 aaKnown RBP15.91■□□□□ 0.14
SFSWAP-209ENST00000540469 GAS2L2Q8NHY3 880 aa15.91■□□□□ 0.14
SFSWAP-209ENST00000540469 DNTTIP2Q5QJE6 756 aaKnown RBP15.91■□□□□ 0.14
SFSWAP-209ENST00000540469 TRAK1Q9UPV9 953 aa15.91■□□□□ 0.14
SFSWAP-209ENST00000540469 DDIT3P35638 169 aa15.9■□□□□ 0.14
SFSWAP-209ENST00000540469 SAMD9LQ8IVG5 1584 aa15.9■□□□□ 0.14
SFSWAP-209ENST00000540469 STAC3Q96MF2 364 aa15.89■□□□□ 0.13
SFSWAP-209ENST00000540469 RIPK4P57078 832 aa15.89■□□□□ 0.13
SFSWAP-209ENST00000540469 NUCB1Q02818 461 aa15.89■□□□□ 0.13
SFSWAP-209ENST00000540469 C1orf115Q9H7X2 142 aa15.88■□□□□ 0.13
SFSWAP-209ENST00000540469 KDM5AP29375 1690 aaKnown RBP15.88■□□□□ 0.13
SFSWAP-209ENST00000540469 NCOA3Q9Y6Q9 1424 aa15.87■□□□□ 0.13
SFSWAP-209ENST00000540469 CCDC27Q2M243 656 aa15.87■□□□□ 0.13
SFSWAP-209ENST00000540469 BMP2KLQ5H9B9 411 aa15.87■□□□□ 0.13
SFSWAP-209ENST00000540469 TBC1D9Q6ZT07 1266 aa15.87■□□□□ 0.13
SFSWAP-209ENST00000540469 RNF17Q9BXT8 1623 aaKnown RBP15.87■□□□□ 0.13
SFSWAP-209ENST00000540469 CT47B1P0C2W7 299 aaPredicted RBP15.86■□□□□ 0.13
SFSWAP-209ENST00000540469 ZSCAN23Q3MJ62 389 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms