RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 USP32Q8NFA0 1604 aa18.54■□□□□ 0.56
CCDC42-202ENST00000539522 SAFB2Q14151 953 aaKnown RBP eCLIP18.53■□□□□ 0.56
CCDC42-202ENST00000539522 CARD11Q9BXL7 1154 aa18.53■□□□□ 0.56
CCDC42-202ENST00000539522 TULP4Q9NRJ4 1543 aa18.52■□□□□ 0.56
CCDC42-202ENST00000539522 RGPD8O14715 1765 aaPredicted RBP18.52■□□□□ 0.55
CCDC42-202ENST00000539522 DCCP43146 1447 aa18.51■□□□□ 0.55
CCDC42-202ENST00000539522 MST1RQ04912 1400 aa18.5■□□□□ 0.55
CCDC42-202ENST00000539522 C19orf44Q9H6X5 657 aa18.5■□□□□ 0.55
CCDC42-202ENST00000539522 MSH6P52701 1360 aa18.49■□□□□ 0.55
CCDC42-202ENST00000539522 CENPJQ9HC77 1338 aaPredicted RBP18.49■□□□□ 0.55
CCDC42-202ENST00000539522 USP47Q96K76 1375 aa18.48■□□□□ 0.55
CCDC42-202ENST00000539522 HIRIP3Q9BW71 556 aaPredicted RBP18.48■□□□□ 0.55
CCDC42-202ENST00000539522 MINK1Q8N4C8 1332 aaPredicted RBP18.48■□□□□ 0.55
CCDC42-202ENST00000539522 TESK2Q96S53 571 aa18.47■□□□□ 0.55
CCDC42-202ENST00000539522 POGKQ9P215 609 aa18.47■□□□□ 0.55
CCDC42-202ENST00000539522 TOPAZ1Q8N9V7 1692 aa18.45■□□□□ 0.54
CCDC42-202ENST00000539522 ROBO1Q9Y6N7 1651 aa18.45■□□□□ 0.54
CCDC42-202ENST00000539522 ST20-MTHFSA0A0A6YYL1 179 aa18.45■□□□□ 0.54
CCDC42-202ENST00000539522 PRR36Q9H6K5 1346 aa18.45■□□□□ 0.54
CCDC42-202ENST00000539522 C1orf167Q5SNV9 1468 aa18.45■□□□□ 0.54
CCDC42-202ENST00000539522 SBNO2Q9Y2G9 1366 aa18.44■□□□□ 0.54
CCDC42-202ENST00000539522 C14orf37Q86TY3 774 aa18.44■□□□□ 0.54
CCDC42-202ENST00000539522 ATP7BP35670 1465 aa18.43■□□□□ 0.54
CCDC42-202ENST00000539522 UBAP1LF5GYI3 381 aa18.42■□□□□ 0.54
CCDC42-202ENST00000539522 EIF3AQ14152 1382 aaKnown RBP18.42■□□□□ 0.54
CCDC42-202ENST00000539522 WASLO00401 505 aaPredicted RBP18.41■□□□□ 0.54
CCDC42-202ENST00000539522 CADPS2Q86UW7 1296 aa18.41■□□□□ 0.54
CCDC42-202ENST00000539522 SLAIN2Q9P270 581 aa18.41■□□□□ 0.54
CCDC42-202ENST00000539522 NHSL1Q5SYE7 1610 aa18.39■□□□□ 0.53
CCDC42-202ENST00000539522 NUTM2FA1L443 756 aa18.39■□□□□ 0.53
CCDC42-202ENST00000539522 HSPA5P11021 654 aaKnown RBP18.39■□□□□ 0.53
CCDC42-202ENST00000539522 ATF3P18847 181 aa18.39■□□□□ 0.53
CCDC42-202ENST00000539522 DISP3Q9P2K9 1392 aa18.39■□□□□ 0.53
CCDC42-202ENST00000539522 ORAI2Q96SN7 254 aa18.38■□□□□ 0.53
CCDC42-202ENST00000539522 CDK19Q9BWU1 502 aa18.38■□□□□ 0.53
CCDC42-202ENST00000539522 TOM1O60784 492 aa18.37■□□□□ 0.53
CCDC42-202ENST00000539522 BRINP3Q76B58 766 aa18.37■□□□□ 0.53
CCDC42-202ENST00000539522 ANKARQ7Z5J8 1434 aa18.37■□□□□ 0.53
CCDC42-202ENST00000539522 ITSN1Q15811 1721 aa18.36■□□□□ 0.53
CCDC42-202ENST00000539522 PIP4K2BP78356 416 aa18.35■□□□□ 0.53
CCDC42-202ENST00000539522 FBXO41Q8TF61 875 aa18.35■□□□□ 0.53
CCDC42-202ENST00000539522 CABP2Q9NPB3 220 aa18.35■□□□□ 0.53
CCDC42-202ENST00000539522 AHDC1Q5TGY3 1603 aaPredicted RBP18.34■□□□□ 0.53
CCDC42-202ENST00000539522 C11orf95C9JLR9 678 aaPredicted RBP18.34■□□□□ 0.53
CCDC42-202ENST00000539522 MYOM1P52179 1685 aa18.34■□□□□ 0.53
CCDC42-202ENST00000539522 KIF1AQ12756 1690 aa18.34■□□□□ 0.53
CCDC42-202ENST00000539522 EIF4G2P78344 907 aaKnown RBP eCLIP18.33■□□□□ 0.52
CCDC42-202ENST00000539522 DDX17Q92841 729 aaKnown RBP18.33■□□□□ 0.52
CCDC42-202ENST00000539522 COL16A1Q07092 1604 aaPredicted RBP18.33■□□□□ 0.52
CCDC42-202ENST00000539522 NUDT16Q96DE0 195 aaKnown RBP18.32■□□□□ 0.52
CCDC42-202ENST00000539522 PHLPP1O60346 1717 aa18.31■□□□□ 0.52
CCDC42-202ENST00000539522 EVC2Q86UK5 1308 aa18.3■□□□□ 0.52
CCDC42-202ENST00000539522 TRPM3Q9HCF6 1732 aaPredicted RBP18.3■□□□□ 0.52
CCDC42-202ENST00000539522 PXDNQ92626 1479 aa18.3■□□□□ 0.52
CCDC42-202ENST00000539522 CD163L1Q9NR16 1453 aa18.3■□□□□ 0.52
CCDC42-202ENST00000539522 ESCO1Q5FWF5 840 aa18.29■□□□□ 0.52
CCDC42-202ENST00000539522 AKAP12Q02952 1782 aa18.29■□□□□ 0.52
CCDC42-202ENST00000539522 SRPK2P78362 688 aaKnown RBP18.28■□□□□ 0.52
CCDC42-202ENST00000539522 PPIP5K1Q6PFW1 1433 aa18.28■□□□□ 0.52
CCDC42-202ENST00000539522 PMFBP1Q8TBY8 1022 aa18.27■□□□□ 0.52
CCDC42-202ENST00000539522 SCAF1Q9H7N4 1312 aaKnown RBP18.26■□□□□ 0.51
CCDC42-202ENST00000539522 HSPA1LP34931 641 aa18.26■□□□□ 0.51
CCDC42-202ENST00000539522 ILDR1Q86SU0 546 aaPredicted RBP18.26■□□□□ 0.51
CCDC42-202ENST00000539522 PHF8Q9UPP1 1060 aa18.26■□□□□ 0.51
CCDC42-202ENST00000539522 POLR3AO14802 1390 aaPredicted RBP18.26■□□□□ 0.51
CCDC42-202ENST00000539522 NRKQ7Z2Y5 1582 aa18.25■□□□□ 0.51
CCDC42-202ENST00000539522 PLEKHG3A1L390 1219 aa18.25■□□□□ 0.51
CCDC42-202ENST00000539522 CCDC61Q9Y6R9 512 aa18.25■□□□□ 0.51
CCDC42-202ENST00000539522 MON2Q7Z3U7 1717 aa18.25■□□□□ 0.51
CCDC42-202ENST00000539522 FOXO3O43524 673 aa18.24■□□□□ 0.51
CCDC42-202ENST00000539522 PUS7Q96PZ0 661 aaKnown RBP18.24■□□□□ 0.51
CCDC42-202ENST00000539522 CABP1Q9NZU7 370 aa18.24■□□□□ 0.51
CCDC42-202ENST00000539522 SOS2Q07890 1332 aaPredicted RBP18.23■□□□□ 0.51
CCDC42-202ENST00000539522 ALS2Q96Q42 1657 aa18.23■□□□□ 0.51
CCDC42-202ENST00000539522 TMF1P82094 1093 aa18.23■□□□□ 0.51
CCDC42-202ENST00000539522 CPSF1Q10570 1443 aaKnown RBP18.23■□□□□ 0.51
CCDC42-202ENST00000539522 ATAD2Q6PL18 1390 aa18.22■□□□□ 0.51
CCDC42-202ENST00000539522 XPCQ01831 940 aaPredicted RBP18.22■□□□□ 0.51
CCDC42-202ENST00000539522 SSH2Q76I76 1423 aa18.22■□□□□ 0.51
CCDC42-202ENST00000539522 ACEP12821 1306 aa18.22■□□□□ 0.51
CCDC42-202ENST00000539522 SLC12A5Q9H2X9 1139 aa18.21■□□□□ 0.51
CCDC42-202ENST00000539522 MARF1Q9Y4F3 1742 aaKnown RBP18.2■□□□□ 0.5
CCDC42-202ENST00000539522 KIF7Q2M1P5 1343 aa18.2■□□□□ 0.5
CCDC42-202ENST00000539522 SHPRHQ149N8 1683 aa18.19■□□□□ 0.5
CCDC42-202ENST00000539522 CRYBG1Q9Y4K1 1723 aa18.19■□□□□ 0.5
CCDC42-202ENST00000539522 WASHC2AQ641Q2 1341 aa18.19■□□□□ 0.5
CCDC42-202ENST00000539522 USP6P35125 1406 aa18.17■□□□□ 0.5
CCDC42-202ENST00000539522 COL22A1Q8NFW1 1626 aaPredicted RBP18.17■□□□□ 0.5
CCDC42-202ENST00000539522 PIK3C2AO00443 1686 aa18.17■□□□□ 0.5
CCDC42-202ENST00000539522 NPHP3Q7Z494 1330 aa18.17■□□□□ 0.5
CCDC42-202ENST00000539522 A0A1W2PP64 1363 aa18.17■□□□□ 0.5
CCDC42-202ENST00000539522 ABCA3Q99758 1704 aa18.16■□□□□ 0.5
CCDC42-202ENST00000539522 KRT28Q7Z3Y7 464 aa18.16■□□□□ 0.5
CCDC42-202ENST00000539522 CCDC7Q96M83 1385 aa18.16■□□□□ 0.5
CCDC42-202ENST00000539522 SLC24A1O60721 1099 aa18.15■□□□□ 0.5
CCDC42-202ENST00000539522 NGDNQ8NEJ9 315 aaKnown RBP18.14■□□□□ 0.49
CCDC42-202ENST00000539522 SPATA31A3Q5VYP0 1347 aa18.14■□□□□ 0.49
CCDC42-202ENST00000539522 SBNO1A3KN83 1393 aa18.14■□□□□ 0.49
CCDC42-202ENST00000539522 PNPLA6Q8IY17 1366 aa18.14■□□□□ 0.49
CCDC42-202ENST00000539522 TNS3Q68CZ2 1445 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms