RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 NCAPD3P42695 1498 aa9.08□□□□□ -0.96
USP28-207ENST00000538475 WASHC2AQ641Q2 1341 aa9.08□□□□□ -0.96
USP28-207ENST00000538475 ANP32AP39687 249 aaKnown RBP9.08□□□□□ -0.96
USP28-207ENST00000538475 RSPH4AQ5TD94 716 aa9.08□□□□□ -0.96
USP28-207ENST00000538475 KRI1Q8N9T8 703 aaKnown RBP9.08□□□□□ -0.96
USP28-207ENST00000538475 PRR14Q9BWN1 585 aa9.08□□□□□ -0.96
USP28-207ENST00000538475 ABCA5Q8WWZ7 1642 aa9.07□□□□□ -0.96
USP28-207ENST00000538475 ITGAEP38570 1179 aa9.07□□□□□ -0.96
USP28-207ENST00000538475 APLP1P51693 650 aa9.07□□□□□ -0.96
USP28-207ENST00000538475 KCNC4Q03721 635 aa9.07□□□□□ -0.96
USP28-207ENST00000538475 IPO9Q96P70 1041 aaKnown RBP9.07□□□□□ -0.96
USP28-207ENST00000538475 MINK1Q8N4C8 1332 aaPredicted RBP9.06□□□□□ -0.96
USP28-207ENST00000538475 IRF6O14896 467 aa9.06□□□□□ -0.96
USP28-207ENST00000538475 ITGBL1O95965 494 aaPredicted RBP9.06□□□□□ -0.96
USP28-207ENST00000538475 NLRP7Q8WX94 980 aa9.06□□□□□ -0.96
USP28-207ENST00000538475 DAXXQ9UER7 740 aaPredicted RBP9.06□□□□□ -0.96
USP28-207ENST00000538475 NCOA2Q15596 1464 aa9.06□□□□□ -0.96
USP28-207ENST00000538475 PRDM2Q13029 1718 aa9.05□□□□□ -0.96
USP28-207ENST00000538475 KMT5BQ4FZB7 885 aa9.05□□□□□ -0.96
USP28-207ENST00000538475 TRIM52Q96A61 297 aa9.05□□□□□ -0.96
USP28-207ENST00000538475 ZBED9Q6R2W3 1325 aa9.05□□□□□ -0.96
USP28-207ENST00000538475 IFFO2Q5TF58 517 aa9.04□□□□□ -0.96
USP28-207ENST00000538475 RDH13Q8NBN7 331 aa9.04□□□□□ -0.96
USP28-207ENST00000538475 MTRQ99707 1265 aa9.04□□□□□ -0.96
USP28-207ENST00000538475 WASHC2CQ9Y4E1 1318 aa9.04□□□□□ -0.96
USP28-207ENST00000538475 LRRC9Q6ZRR7 1453 aa9.03□□□□□ -0.96
USP28-207ENST00000538475 ARHGAP35Q9NRY4 1499 aa9.03□□□□□ -0.96
USP28-207ENST00000538475 DDX11L8A8MPP1 907 aa9.03□□□□□ -0.96
USP28-207ENST00000538475 PPM1GO15355 546 aaPredicted RBP9.03□□□□□ -0.96
USP28-207ENST00000538475 CFHP08603 1231 aa9.03□□□□□ -0.96
USP28-207ENST00000538475 KANK4Q5T7N3 995 aaPredicted RBP9.03□□□□□ -0.96
USP28-207ENST00000538475 ZC3H15Q8WU90 426 aaKnown RBP9.03□□□□□ -0.96
USP28-207ENST00000538475 CCDC102AQ96A19 550 aa9.03□□□□□ -0.96
USP28-207ENST00000538475 PHOX2BQ99453 314 aa9.03□□□□□ -0.96
USP28-207ENST00000538475 IL21Q9HBE4 155 aa9.03□□□□□ -0.96
USP28-207ENST00000538475 KIF27Q86VH2 1401 aa9.03□□□□□ -0.96
USP28-207ENST00000538475 SLC10A3P09131 477 aa9.02□□□□□ -0.97
USP28-207ENST00000538475 COPS2P61201 443 aa9.02□□□□□ -0.97
USP28-207ENST00000538475 HNRNPUQ00839 825 aaKnown RBP eCLIP9.02□□□□□ -0.97
USP28-207ENST00000538475 SULF1Q8IWU6 871 aa9.02□□□□□ -0.97
USP28-207ENST00000538475 PCDHB3Q9Y5E6 796 aa9.02□□□□□ -0.97
USP28-207ENST00000538475 RNF123Q5XPI4 1314 aa9.02□□□□□ -0.97
USP28-207ENST00000538475 TJAP1Q5JTD0 557 aa9.01□□□□□ -0.97
USP28-207ENST00000538475 SMG6Q86US8 1419 aaKnown RBP9.01□□□□□ -0.97
USP28-207ENST00000538475 TONSLQ96HA7 1378 aa9□□□□□ -0.97
USP28-207ENST00000538475 UACAQ9BZF9 1416 aa9□□□□□ -0.97
USP28-207ENST00000538475 ZMYND10O75800 440 aa9□□□□□ -0.97
USP28-207ENST00000538475 BARGINQ6ZT62 677 aa9□□□□□ -0.97
USP28-207ENST00000538475 AQRO60306 1485 aaKnown RBP eCLIP9□□□□□ -0.97
USP28-207ENST00000538475 CNTLNQ9NXG0 1405 aa8.99□□□□□ -0.97
USP28-207ENST00000538475 A0A0G2JS52 829 aa8.99□□□□□ -0.97
USP28-207ENST00000538475 ACTN4O43707 911 aaKnown RBP8.99□□□□□ -0.97
USP28-207ENST00000538475 MDM2Q00987 491 aaPredicted RBP8.99□□□□□ -0.97
USP28-207ENST00000538475 CCDC136Q96JN2 1154 aa8.99□□□□□ -0.97
USP28-207ENST00000538475 CCDC18Q5T9S5 1454 aa8.98□□□□□ -0.97
USP28-207ENST00000538475 BLOC1S3Q6QNY0 202 aa8.97□□□□□ -0.97
USP28-207ENST00000538475 ZNF516Q92618 1163 aa8.97□□□□□ -0.97
USP28-207ENST00000538475 HECW1Q76N89 1606 aa8.97□□□□□ -0.97
USP28-207ENST00000538475 EFCAB5A4FU69 1503 aa8.96□□□□□ -0.97
USP28-207ENST00000538475 RGS20O76081 388 aa8.96□□□□□ -0.98
USP28-207ENST00000538475 MS4A1P11836 297 aa8.96□□□□□ -0.98
USP28-207ENST00000538475 RSPH6AQ9H0K4 717 aa8.96□□□□□ -0.98
USP28-207ENST00000538475 SALL2Q9Y467 1007 aaPredicted RBP8.96□□□□□ -0.98
USP28-207ENST00000538475 PTPN23Q9H3S7 1636 aa8.95□□□□□ -0.98
USP28-207ENST00000538475 GCC2Q8IWJ2 1684 aa8.95□□□□□ -0.98
USP28-207ENST00000538475 TCERG1O14776 1098 aaKnown RBP8.95□□□□□ -0.98
USP28-207ENST00000538475 CLCN1P35523 988 aa8.95□□□□□ -0.98
USP28-207ENST00000538475 HFM1A2PYH4 1435 aa8.95□□□□□ -0.98
USP28-207ENST00000538475 FYCO1Q9BQS8 1478 aa8.95□□□□□ -0.98
USP28-207ENST00000538475 ATAD2BQ9ULI0 1458 aa8.95□□□□□ -0.98
USP28-207ENST00000538475 KDM5BQ9UGL1 1544 aa8.95□□□□□ -0.98
USP28-207ENST00000538475 ZPR1O75312 459 aa8.94□□□□□ -0.98
USP28-207ENST00000538475 DDRGK1Q96HY6 314 aa8.94□□□□□ -0.98
USP28-207ENST00000538475 GPCPD1Q9NPB8 672 aa8.94□□□□□ -0.98
USP28-207ENST00000538475 CUX1P39880 1505 aa8.94□□□□□ -0.98
USP28-207ENST00000538475 NR1I2O75469 434 aa8.93□□□□□ -0.98
USP28-207ENST00000538475 GCGRP47871 477 aa8.93□□□□□ -0.98
USP28-207ENST00000538475 PUS10Q3MIT2 529 aaKnown RBP8.93□□□□□ -0.98
USP28-207ENST00000538475 AKNAQ7Z591 1439 aa8.92□□□□□ -0.98
USP28-207ENST00000538475 TTLL12Q14166 644 aaPredicted RBP8.92□□□□□ -0.98
USP28-207ENST00000538475 GLIPR1L2Q4G1C9 344 aa8.92□□□□□ -0.98
USP28-207ENST00000538475 NKX2-3Q8TAU0 364 aa8.92□□□□□ -0.98
USP28-207ENST00000538475 SIN3AQ96ST3 1273 aa8.92□□□□□ -0.98
USP28-207ENST00000538475 BICRAQ9NZM4 1560 aa8.91□□□□□ -0.98
USP28-207ENST00000538475 NCOA1Q15788 1441 aa8.91□□□□□ -0.98
USP28-207ENST00000538475 GGCXP38435 758 aa8.91□□□□□ -0.98
USP28-207ENST00000538475 FUT2Q10981 343 aa8.91□□□□□ -0.98
USP28-207ENST00000538475 KIF21AQ7Z4S6 1674 aa8.91□□□□□ -0.98
USP28-207ENST00000538475 THOC2Q8NI27 1593 aaKnown RBP8.9□□□□□ -0.98
USP28-207ENST00000538475 PHLDB1Q86UU1 1377 aa8.9□□□□□ -0.98
USP28-207ENST00000538475 CD46P15529 392 aa8.9□□□□□ -0.98
USP28-207ENST00000538475 ATP6V1AP38606 617 aa8.9□□□□□ -0.98
USP28-207ENST00000538475 GRIPAP1Q4V328 841 aa8.9□□□□□ -0.98
USP28-207ENST00000538475 B4GALNT3Q6L9W6 998 aa8.9□□□□□ -0.98
USP28-207ENST00000538475 AK7Q96M32 723 aa8.9□□□□□ -0.98
USP28-207ENST00000538475 IRX2Q9BZI1 471 aaPredicted RBP8.9□□□□□ -0.98
USP28-207ENST00000538475 PRKRIP1Q9H875 184 aaPredicted RBP8.9□□□□□ -0.98
USP28-207ENST00000538475 NUDCQ9Y266 331 aa8.9□□□□□ -0.98
USP28-207ENST00000538475 ARID4BQ4LE39 1312 aaPredicted RBP8.89□□□□□ -0.99
USP28-207ENST00000538475 EIF4G2P78344 907 aaKnown RBP eCLIP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms