RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 CARD14Q9BXL6 1004 aa18.1■□□□□ 0.49
LIG1-203ENST00000536218 SLC12A5Q9H2X9 1139 aa18.1■□□□□ 0.49
LIG1-203ENST00000536218 ADGRB3O60242 1522 aa18.1■□□□□ 0.49
LIG1-203ENST00000536218 RPGRIP1LQ68CZ1 1315 aa18.09■□□□□ 0.49
LIG1-203ENST00000536218 RRP9O43818 475 aaKnown RBP18.08■□□□□ 0.49
LIG1-203ENST00000536218 RRP1P56182 461 aaKnown RBP18.08■□□□□ 0.48
LIG1-203ENST00000536218 ERVK-7P63135 1459 aa18.08■□□□□ 0.48
LIG1-203ENST00000536218 RICTORQ6R327 1708 aa18.07■□□□□ 0.48
LIG1-203ENST00000536218 SLC24A1O60721 1099 aa18.07■□□□□ 0.48
LIG1-203ENST00000536218 SLC52A1Q9NWF4 448 aa18.07■□□□□ 0.48
LIG1-203ENST00000536218 PIK3C2GO75747 1445 aa18.06■□□□□ 0.48
LIG1-203ENST00000536218 POGKQ9P215 609 aa18.06■□□□□ 0.48
LIG1-203ENST00000536218 CAMSAP1Q5T5Y3 1602 aa18.05■□□□□ 0.48
LIG1-203ENST00000536218 CCDC146Q8IYE0 955 aa18.05■□□□□ 0.48
LIG1-203ENST00000536218 SIGLEC1Q9BZZ2 1709 aa18.05■□□□□ 0.48
LIG1-203ENST00000536218 NRXN1Q9ULB1 1477 aa18.04■□□□□ 0.48
LIG1-203ENST00000536218 NEURL4Q96JN8 1562 aa18.04■□□□□ 0.48
LIG1-203ENST00000536218 CABP2Q9NPB3 220 aa18.03■□□□□ 0.48
LIG1-203ENST00000536218 KIAA1210Q9ULL0 1709 aa18.03■□□□□ 0.48
LIG1-203ENST00000536218 ASXL1Q8IXJ9 1541 aa18.02■□□□□ 0.48
LIG1-203ENST00000536218 SYNMO15061 1565 aa18.02■□□□□ 0.48
LIG1-203ENST00000536218 RCAN3Q9UKA8 241 aa18.02■□□□□ 0.48
LIG1-203ENST00000536218 IFT172Q9UG01 1749 aa18.01■□□□□ 0.47
LIG1-203ENST00000536218 GLI2P10070 1586 aa18.01■□□□□ 0.47
LIG1-203ENST00000536218 DIP2BQ9P265 1576 aa18.01■□□□□ 0.47
LIG1-203ENST00000536218 KDM5AP29375 1690 aaKnown RBP18■□□□□ 0.47
LIG1-203ENST00000536218 MORC1Q86VD1 984 aa17.99■□□□□ 0.47
LIG1-203ENST00000536218 ESF1Q9H501 851 aaKnown RBP17.99■□□□□ 0.47
LIG1-203ENST00000536218 ARHGAP31Q2M1Z3 1444 aa17.99■□□□□ 0.47
LIG1-203ENST00000536218 SRPK2P78362 688 aaKnown RBP17.99■□□□□ 0.47
LIG1-203ENST00000536218 MINK1Q8N4C8 1332 aaPredicted RBP17.98■□□□□ 0.47
LIG1-203ENST00000536218 PPLO60437 1756 aa17.98■□□□□ 0.47
LIG1-203ENST00000536218 PLIN1O60240 522 aa17.98■□□□□ 0.47
LIG1-203ENST00000536218 PDE3BQ13370 1112 aa17.97■□□□□ 0.47
LIG1-203ENST00000536218 EVC2Q86UK5 1308 aa17.97■□□□□ 0.47
LIG1-203ENST00000536218 NSD3Q9BZ95 1437 aa17.97■□□□□ 0.47
LIG1-203ENST00000536218 L1TD1Q5T7N2 865 aaKnown RBP17.96■□□□□ 0.47
LIG1-203ENST00000536218 MYOM1P52179 1685 aa17.96■□□□□ 0.47
LIG1-203ENST00000536218 PRAM1Q96QH2 718 aa17.96■□□□□ 0.47
LIG1-203ENST00000536218 ADGRB1O14514 1584 aa17.96■□□□□ 0.47
LIG1-203ENST00000536218 PLPPR3Q6T4P5 718 aa17.95■□□□□ 0.46
LIG1-203ENST00000536218 SBNO2Q9Y2G9 1366 aa17.95■□□□□ 0.46
LIG1-203ENST00000536218 APAF1O14727 1248 aa17.95■□□□□ 0.46
LIG1-203ENST00000536218 NEXMIFQ5QGS0 1516 aa17.94■□□□□ 0.46
LIG1-203ENST00000536218 BLMP54132 1417 aaPredicted RBP17.94■□□□□ 0.46
LIG1-203ENST00000536218 RBM10P98175 930 aaKnown RBP17.93■□□□□ 0.46
LIG1-203ENST00000536218 SETBP1Q9Y6X0 1596 aa17.93■□□□□ 0.46
LIG1-203ENST00000536218 NPC1L1Q9UHC9 1359 aa17.92■□□□□ 0.46
LIG1-203ENST00000536218 PIK3C2BO00750 1634 aa17.92■□□□□ 0.46
LIG1-203ENST00000536218 PLEKHH1Q9ULM0 1364 aa17.92■□□□□ 0.46
LIG1-203ENST00000536218 NEUROD2Q15784 382 aa17.91■□□□□ 0.46
LIG1-203ENST00000536218 SLKQ9H2G2 1235 aaPredicted RBP17.91■□□□□ 0.46
LIG1-203ENST00000536218 CRBNQ96SW2 442 aa17.89■□□□□ 0.46
LIG1-203ENST00000536218 QRICH2Q9H0J4 1663 aa17.89■□□□□ 0.45
LIG1-203ENST00000536218 CLCN1P35523 988 aa17.89■□□□□ 0.45
LIG1-203ENST00000536218 GZF1Q9H116 711 aaPredicted RBP17.89■□□□□ 0.45
LIG1-203ENST00000536218 CGNL1Q0VF96 1302 aa17.89■□□□□ 0.45
LIG1-203ENST00000536218 WAPLQ7Z5K2 1190 aa17.89■□□□□ 0.45
LIG1-203ENST00000536218 MYO5BQ9ULV0 1848 aa17.89■□□□□ 0.45
LIG1-203ENST00000536218 ZMYM4Q5VZL5 1548 aa17.89■□□□□ 0.45
LIG1-203ENST00000536218 MTHFSP49914 203 aa17.88■□□□□ 0.45
LIG1-203ENST00000536218 GOLGA2Q08379 1002 aa17.88■□□□□ 0.45
LIG1-203ENST00000536218 PREX1Q8TCU6 1659 aa17.88■□□□□ 0.45
LIG1-203ENST00000536218 RGS3P49796 1198 aa17.88■□□□□ 0.45
LIG1-203ENST00000536218 PANK2Q9BZ23 570 aa17.87■□□□□ 0.45
LIG1-203ENST00000536218 ZC3H13Q5T200 1668 aaKnown RBP17.87■□□□□ 0.45
LIG1-203ENST00000536218 FAM161AQ3B820 660 aa17.87■□□□□ 0.45
LIG1-203ENST00000536218 GGNBP2Q9H3C7 697 aa17.87■□□□□ 0.45
LIG1-203ENST00000536218 RRP7AQ9Y3A4 280 aaKnown RBP17.86■□□□□ 0.45
LIG1-203ENST00000536218 XRCC6P12956 609 aaKnown RBP eCLIP17.86■□□□□ 0.45
LIG1-203ENST00000536218 MYO3AQ8NEV4 1616 aa17.86■□□□□ 0.45
LIG1-203ENST00000536218 GOLGA6L3A6NEY3 463 aa17.85■□□□□ 0.45
LIG1-203ENST00000536218 PPP6R1Q9UPN7 881 aa17.85■□□□□ 0.45
LIG1-203ENST00000536218 TMEM131LA2VDJ0 1609 aa17.85■□□□□ 0.45
LIG1-203ENST00000536218 SPINK5Q9NQ38 1064 aaPredicted RBP17.85■□□□□ 0.45
LIG1-203ENST00000536218 CDK19Q9BWU1 502 aa17.84■□□□□ 0.45
LIG1-203ENST00000536218 YTHDC2Q9H6S0 1430 aaKnown RBP17.84■□□□□ 0.45
LIG1-203ENST00000536218 DUSP27Q5VZP5 1158 aa17.84■□□□□ 0.45
LIG1-203ENST00000536218 ZFYVE9O95405 1425 aa17.84■□□□□ 0.45
LIG1-203ENST00000536218 TULP4Q9NRJ4 1543 aa17.83■□□□□ 0.45
LIG1-203ENST00000536218 INSRP06213 1382 aa17.83■□□□□ 0.44
LIG1-203ENST00000536218 ZMYM3Q14202 1370 aa17.83■□□□□ 0.44
LIG1-203ENST00000536218 CLTCQ00610 1675 aaKnown RBP17.83■□□□□ 0.44
LIG1-203ENST00000536218 CABP1Q9NZU7 370 aa17.82■□□□□ 0.44
LIG1-203ENST00000536218 DMRT2Q9Y5R5 561 aa17.82■□□□□ 0.44
LIG1-203ENST00000536218 C8orf34Q49A92 452 aa17.81■□□□□ 0.44
LIG1-203ENST00000536218 C20orf194Q5TEA3 1177 aa17.81■□□□□ 0.44
LIG1-203ENST00000536218 ANKRD36BQ8N2N9 1353 aa17.81■□□□□ 0.44
LIG1-203ENST00000536218 CEBPAP49715 358 aaPredicted RBP17.81■□□□□ 0.44
LIG1-203ENST00000536218 RIMS2Q9UQ26 1411 aa17.8■□□□□ 0.44
LIG1-203ENST00000536218 TXNDC2Q86VQ3 553 aa17.8■□□□□ 0.44
LIG1-203ENST00000536218 CFAP53Q96M91 514 aa17.8■□□□□ 0.44
LIG1-203ENST00000536218 A0A1W2PP64 1363 aa17.8■□□□□ 0.44
LIG1-203ENST00000536218 SLFN5Q08AF3 891 aa17.8■□□□□ 0.44
LIG1-203ENST00000536218 ARHGEF28Q8N1W1 1705 aaKnown RBP17.79■□□□□ 0.44
LIG1-203ENST00000536218 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.79■□□□□ 0.44
LIG1-203ENST00000536218 TERF2IPQ9NYB0 399 aa17.79■□□□□ 0.44
LIG1-203ENST00000536218 ZNF521Q96K83 1311 aa17.79■□□□□ 0.44
LIG1-203ENST00000536218 U2AF1L5P0DN76 240 aaPredicted RBP17.79■□□□□ 0.44
LIG1-203ENST00000536218 U2AF1Q01081 240 aaKnown RBP eCLIP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms