RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 FMNL1O95466 1100 aaPredicted RBP6.75□□□□□ -1.33
CSMD3-210ENST00000534172 PRM3Q9NNZ6 103 aa6.75□□□□□ -1.33
CSMD3-210ENST00000534172 WBP1LQ9NX94 342 aa6.75□□□□□ -1.33
CSMD3-210ENST00000534172 APLP1P51693 650 aa6.75□□□□□ -1.33
CSMD3-210ENST00000534172 RFC5P40937 340 aa6.74□□□□□ -1.33
CSMD3-210ENST00000534172 RETREG3Q86VR2 466 aa6.74□□□□□ -1.33
CSMD3-210ENST00000534172 HELBQ8NG08 1087 aaPredicted RBP6.74□□□□□ -1.33
CSMD3-210ENST00000534172 C6orf229H3BNL8 230 aa6.73□□□□□ -1.33
CSMD3-210ENST00000534172 RNF166Q96A37 237 aaPredicted RBP6.73□□□□□ -1.33
CSMD3-210ENST00000534172 HRCP23327 699 aa6.73□□□□□ -1.33
CSMD3-210ENST00000534172 DESI1Q6ICB0 168 aa6.73□□□□□ -1.33
CSMD3-210ENST00000534172 IL21Q9HBE4 155 aa6.73□□□□□ -1.33
CSMD3-210ENST00000534172 C14orf37Q86TY3 774 aa6.72□□□□□ -1.33
CSMD3-210ENST00000534172 SPNS2Q8IVW8 549 aa6.72□□□□□ -1.33
CSMD3-210ENST00000534172 SLC27A5Q9Y2P5 690 aa6.72□□□□□ -1.33
CSMD3-210ENST00000534172 PTPN5P54829 565 aa6.72□□□□□ -1.33
CSMD3-210ENST00000534172 CSPP1Q1MSJ5 1256 aa6.72□□□□□ -1.33
CSMD3-210ENST00000534172 PCDHGC3Q9UN70 934 aa6.72□□□□□ -1.33
CSMD3-210ENST00000534172 PCDHB15Q9Y5E8 787 aa6.72□□□□□ -1.33
CSMD3-210ENST00000534172 BRICD5Q6PL45 260 aa6.71□□□□□ -1.33
CSMD3-210ENST00000534172 SCUBE3Q8IX30 993 aa6.71□□□□□ -1.33
CSMD3-210ENST00000534172 PNMA1Q8ND90 353 aa6.71□□□□□ -1.34
CSMD3-210ENST00000534172 USB1Q9BQ65 265 aaKnown RBP6.71□□□□□ -1.34
CSMD3-210ENST00000534172 PUS10Q3MIT2 529 aaKnown RBP6.7□□□□□ -1.34
CSMD3-210ENST00000534172 MSS51Q4VC12 460 aa6.7□□□□□ -1.34
CSMD3-210ENST00000534172 BLOC1S3Q6QNY0 202 aa6.7□□□□□ -1.34
CSMD3-210ENST00000534172 QPCTQ16769 361 aa6.69□□□□□ -1.34
CSMD3-210ENST00000534172 CABLES1Q8TDN4 633 aa6.69□□□□□ -1.34
CSMD3-210ENST00000534172 AP1G2O75843 785 aa6.69□□□□□ -1.34
CSMD3-210ENST00000534172 GUCA2AQ02747 115 aa6.69□□□□□ -1.34
CSMD3-210ENST00000534172 RTL5Q5HYW3 569 aaPredicted RBP6.69□□□□□ -1.34
CSMD3-210ENST00000534172 WWC1Q8IX03 1113 aa6.69□□□□□ -1.34
CSMD3-210ENST00000534172 PRR7Q8TB68 274 aa6.69□□□□□ -1.34
CSMD3-210ENST00000534172 ZPR1O75312 459 aa6.68□□□□□ -1.34
CSMD3-210ENST00000534172 RAD21O60216 631 aa6.68□□□□□ -1.34
CSMD3-210ENST00000534172 ADH1BP00325 375 aa6.68□□□□□ -1.34
CSMD3-210ENST00000534172 THAP11Q96EK4 314 aa6.68□□□□□ -1.34
CSMD3-210ENST00000534172 SPSB2Q99619 263 aa6.68□□□□□ -1.34
CSMD3-210ENST00000534172 MTRQ99707 1265 aa6.68□□□□□ -1.34
CSMD3-210ENST00000534172 JUNDP17535 347 aa6.67□□□□□ -1.34
CSMD3-210ENST00000534172 HLA-CQ95604 372 aa6.67□□□□□ -1.34
CSMD3-210ENST00000534172 UBTFP17480 764 aaKnown RBP6.66□□□□□ -1.34
CSMD3-210ENST00000534172 COPS2P61201 443 aa6.66□□□□□ -1.34
CSMD3-210ENST00000534172 MCM6Q14566 821 aa6.66□□□□□ -1.34
CSMD3-210ENST00000534172 KCNC4Q03721 635 aa6.66□□□□□ -1.34
CSMD3-210ENST00000534172 TJAP1Q5JTD0 557 aa6.66□□□□□ -1.34
CSMD3-210ENST00000534172 USP17L8P0C7I0 530 aa6.65□□□□□ -1.34
CSMD3-210ENST00000534172 GGCXP38435 758 aa6.65□□□□□ -1.34
CSMD3-210ENST00000534172 ITGBL1O95965 494 aaPredicted RBP6.65□□□□□ -1.35
CSMD3-210ENST00000534172 PTPRNQ16849 979 aa6.65□□□□□ -1.35
CSMD3-210ENST00000534172 LYPD8Q6UX82 237 aa6.65□□□□□ -1.35
CSMD3-210ENST00000534172 ZMYND15Q9H091 742 aa6.65□□□□□ -1.35
CSMD3-210ENST00000534172 A6NJR5 290 aa6.64□□□□□ -1.35
CSMD3-210ENST00000534172 CFAP99D6REC4 459 aa6.64□□□□□ -1.35
CSMD3-210ENST00000534172 TSC1Q92574 1164 aa6.64□□□□□ -1.35
CSMD3-210ENST00000534172 MMP16P51512 607 aa6.64□□□□□ -1.35
CSMD3-210ENST00000534172 RNF19BQ6ZMZ0 732 aa6.64□□□□□ -1.35
CSMD3-210ENST00000534172 HOMEZQ8IX15 550 aa6.64□□□□□ -1.35
CSMD3-210ENST00000534172 ARMC2Q8NEN0 867 aa6.63□□□□□ -1.35
CSMD3-210ENST00000534172 SLC6A16Q9GZN6 736 aa6.63□□□□□ -1.35
CSMD3-210ENST00000534172 DXOO77932 396 aaKnown RBP6.62□□□□□ -1.35
CSMD3-210ENST00000534172 MMRN1Q13201 1228 aa6.62□□□□□ -1.35
CSMD3-210ENST00000534172 SYMPKQ92797 1274 aaKnown RBP6.62□□□□□ -1.35
CSMD3-210ENST00000534172 NDUFB9Q9Y6M9 179 aa6.62□□□□□ -1.35
CSMD3-210ENST00000534172 ZC3H4Q9UPT8 1303 aaKnown RBP6.62□□□□□ -1.35
CSMD3-210ENST00000534172 CTDSPL2Q05D32 466 aa6.61□□□□□ -1.35
CSMD3-210ENST00000534172 IFFO2Q5TF58 517 aa6.61□□□□□ -1.35
CSMD3-210ENST00000534172 FAM160A2Q8N612 972 aaPredicted RBP6.6□□□□□ -1.35
CSMD3-210ENST00000534172 SNRKQ9NRH2 765 aa6.6□□□□□ -1.35
CSMD3-210ENST00000534172 CCNYL3P0C7X3 344 aa6.6□□□□□ -1.35
CSMD3-210ENST00000534172 FBXO31Q5XUX0 539 aaPredicted RBP6.6□□□□□ -1.35
CSMD3-210ENST00000534172 GPKOWQ92917 476 aaPredicted RBP eCLIP6.6□□□□□ -1.35
CSMD3-210ENST00000534172 ZNF592Q92610 1267 aa6.59□□□□□ -1.35
CSMD3-210ENST00000534172 MTMR14Q8NCE2 650 aa6.59□□□□□ -1.35
CSMD3-210ENST00000534172 WASHC4Q2M389 1173 aa6.58□□□□□ -1.36
CSMD3-210ENST00000534172 NUDT12Q9BQG2 462 aa6.58□□□□□ -1.36
CSMD3-210ENST00000534172 EVA1BQ9NVM1 165 aa6.58□□□□□ -1.36
CSMD3-210ENST00000534172 KCNH2Q12809 1159 aa6.58□□□□□ -1.36
CSMD3-210ENST00000534172 ZNF516Q92618 1163 aa6.57□□□□□ -1.36
CSMD3-210ENST00000534172 TLL1O43897 1013 aa6.57□□□□□ -1.36
CSMD3-210ENST00000534172 PROSER2Q86WR7 435 aaPredicted RBP6.57□□□□□ -1.36
CSMD3-210ENST00000534172 COG6Q9Y2V7 657 aa6.57□□□□□ -1.36
CSMD3-210ENST00000534172 F12P00748 615 aaPredicted RBP6.56□□□□□ -1.36
CSMD3-210ENST00000534172 LRRN4Q8WUT4 740 aa6.56□□□□□ -1.36
CSMD3-210ENST00000534172 GJD4Q96KN9 370 aaPredicted RBP6.56□□□□□ -1.36
CSMD3-210ENST00000534172 ZNF330Q9Y3S2 320 aaPredicted RBP6.56□□□□□ -1.36
CSMD3-210ENST00000534172 CTHP32929 405 aa6.56□□□□□ -1.36
CSMD3-210ENST00000534172 NBPF14Q5TI25 921 aa6.56□□□□□ -1.36
CSMD3-210ENST00000534172 GPSM3Q9Y4H4 160 aa6.56□□□□□ -1.36
CSMD3-210ENST00000534172 MCCD1P59942 119 aaPredicted RBP6.55□□□□□ -1.36
CSMD3-210ENST00000534172 ANKLE1Q8NAG6 615 aa6.55□□□□□ -1.36
CSMD3-210ENST00000534172 SOX11P35716 441 aa6.54□□□□□ -1.36
CSMD3-210ENST00000534172 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.54□□□□□ -1.36
CSMD3-210ENST00000534172 FKBPLQ9UIM3 349 aa6.54□□□□□ -1.36
CSMD3-210ENST00000534172 SUPT5HO00267 1087 aaKnown RBP6.54□□□□□ -1.36
CSMD3-210ENST00000534172 PER1O15534 1290 aaPredicted RBP6.54□□□□□ -1.36
CSMD3-210ENST00000534172 ZBTB24O43167 697 aaPredicted RBP6.54□□□□□ -1.36
CSMD3-210ENST00000534172 TRAK2O60296 914 aa6.54□□□□□ -1.36
CSMD3-210ENST00000534172 S1PR4O95977 384 aa6.54□□□□□ -1.36
CSMD3-210ENST00000534172 TRIM34Q9BYJ4 488 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms