RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 MTMR2Q13614 643 aa8.13□□□□□ -1.11
CD44-233ENST00000531141 CSPP1Q1MSJ5 1256 aa8.13□□□□□ -1.11
CD44-233ENST00000531141 PROCA1Q8NCQ7 364 aaPredicted RBP8.13□□□□□ -1.11
CD44-233ENST00000531141 ITGBL1O95965 494 aaPredicted RBP8.12□□□□□ -1.11
CD44-233ENST00000531141 TJAP1Q5JTD0 557 aa8.12□□□□□ -1.11
CD44-233ENST00000531141 PPP2R2DQ66LE6 453 aa8.12□□□□□ -1.11
CD44-233ENST00000531141 PCDHB15Q9Y5E8 787 aa8.12□□□□□ -1.11
CD44-233ENST00000531141 C6orf229H3BNL8 230 aa8.11□□□□□ -1.11
CD44-233ENST00000531141 FMNL1O95466 1100 aaPredicted RBP8.11□□□□□ -1.11
CD44-233ENST00000531141 QPCTQ16769 361 aa8.11□□□□□ -1.11
CD44-233ENST00000531141 RETREG3Q86VR2 466 aa8.11□□□□□ -1.11
CD44-233ENST00000531141 SCUBE3Q8IX30 993 aa8.11□□□□□ -1.11
CD44-233ENST00000531141 ZPR1O75312 459 aa8.1□□□□□ -1.11
CD44-233ENST00000531141 ADH1BP00325 375 aa8.1□□□□□ -1.11
CD44-233ENST00000531141 HRCP23327 699 aa8.1□□□□□ -1.11
CD44-233ENST00000531141 RNF19BQ6ZMZ0 732 aa8.1□□□□□ -1.11
CD44-233ENST00000531141 CABLES1Q8TDN4 633 aa8.1□□□□□ -1.11
CD44-233ENST00000531141 THAP11Q96EK4 314 aa8.1□□□□□ -1.11
CD44-233ENST00000531141 NUTM2BA6NNL0 878 aaPredicted RBP8.09□□□□□ -1.11
CD44-233ENST00000531141 NUTM2EB1AL46 878 aaPredicted RBP8.09□□□□□ -1.11
CD44-233ENST00000531141 TLL1O43897 1013 aa8.09□□□□□ -1.11
CD44-233ENST00000531141 RFC5P40937 340 aa8.09□□□□□ -1.11
CD44-233ENST00000531141 MSS51Q4VC12 460 aa8.09□□□□□ -1.11
CD44-233ENST00000531141 NUTM2DQ5VT03 806 aaPredicted RBP8.09□□□□□ -1.11
CD44-233ENST00000531141 BRICD5Q6PL45 260 aa8.09□□□□□ -1.11
CD44-233ENST00000531141 NUTM2AQ8IVF1 878 aaPredicted RBP8.09□□□□□ -1.11
CD44-233ENST00000531141 USB1Q9BQ65 265 aaKnown RBP8.08□□□□□ -1.12
CD44-233ENST00000531141 KCNC4Q03721 635 aa8.07□□□□□ -1.12
CD44-233ENST00000531141 HELBQ8NG08 1087 aaPredicted RBP8.07□□□□□ -1.12
CD44-233ENST00000531141 SPSB2Q99619 263 aa8.07□□□□□ -1.12
CD44-233ENST00000531141 RTL5Q5HYW3 569 aaPredicted RBP8.06□□□□□ -1.12
CD44-233ENST00000531141 PRR7Q8TB68 274 aa8.06□□□□□ -1.12
CD44-233ENST00000531141 SYMPKQ92797 1274 aaKnown RBP8.06□□□□□ -1.12
CD44-233ENST00000531141 CFAP99D6REC4 459 aa8.05□□□□□ -1.12
CD44-233ENST00000531141 RGS20O76081 388 aa8.05□□□□□ -1.12
CD44-233ENST00000531141 TMEM259Q4ZIN3 620 aa8.05□□□□□ -1.12
CD44-233ENST00000531141 FBXO31Q5XUX0 539 aaPredicted RBP8.05□□□□□ -1.12
CD44-233ENST00000531141 DESI1Q6ICB0 168 aa8.05□□□□□ -1.12
CD44-233ENST00000531141 ZNF516Q92618 1163 aa8.05□□□□□ -1.12
CD44-233ENST00000531141 GTF3C3Q9Y5Q9 886 aa8.05□□□□□ -1.12
CD44-233ENST00000531141 JUNDP17535 347 aa8.03□□□□□ -1.12
CD44-233ENST00000531141 BANK1Q8NDB2 785 aa8.03□□□□□ -1.12
CD44-233ENST00000531141 SOCS7O14512 581 aa8.02□□□□□ -1.13
CD44-233ENST00000531141 DXOO77932 396 aaKnown RBP8.02□□□□□ -1.13
CD44-233ENST00000531141 USP17L8P0C7I0 530 aa8.02□□□□□ -1.13
CD44-233ENST00000531141 IFFO2Q5TF58 517 aa8.02□□□□□ -1.13
CD44-233ENST00000531141 SLC6A16Q9GZN6 736 aa8.02□□□□□ -1.13
CD44-233ENST00000531141 AP1G2O75843 785 aa8.01□□□□□ -1.13
CD44-233ENST00000531141 MMP16P51512 607 aa8.01□□□□□ -1.13
CD44-233ENST00000531141 FLIIQ13045 1269 aa8.01□□□□□ -1.13
CD44-233ENST00000531141 FAM160A2Q8N612 972 aaPredicted RBP8.01□□□□□ -1.13
CD44-233ENST00000531141 TSC1Q92574 1164 aa8.01□□□□□ -1.13
CD44-233ENST00000531141 IRX2Q9BZI1 471 aaPredicted RBP8.01□□□□□ -1.13
CD44-233ENST00000531141 PRDM9Q9NQV7 894 aa8.01□□□□□ -1.13
CD44-233ENST00000531141 APBB1O00213 710 aa8□□□□□ -1.13
CD44-233ENST00000531141 MCM6Q14566 821 aa8□□□□□ -1.13
CD44-233ENST00000531141 PTPRNQ16849 979 aa8□□□□□ -1.13
CD44-233ENST00000531141 NKX2-3Q8TAU0 364 aa8□□□□□ -1.13
CD44-233ENST00000531141 S1PR4O95977 384 aa7.99□□□□□ -1.13
CD44-233ENST00000531141 GGCXP38435 758 aa7.99□□□□□ -1.13
CD44-233ENST00000531141 LYPD8Q6UX82 237 aa7.98□□□□□ -1.13
CD44-233ENST00000531141 CCNYL3P0C7X3 344 aa7.97□□□□□ -1.13
CD44-233ENST00000531141 CTDSPL2Q05D32 466 aa7.96□□□□□ -1.14
CD44-233ENST00000531141 MTMR14Q8NCE2 650 aa7.96□□□□□ -1.14
CD44-233ENST00000531141 NUDT12Q9BQG2 462 aa7.96□□□□□ -1.14
CD44-233ENST00000531141 A0A0G2JS52 829 aa7.95□□□□□ -1.14
CD44-233ENST00000531141 PER1O15534 1290 aaPredicted RBP7.95□□□□□ -1.14
CD44-233ENST00000531141 F12P00748 615 aaPredicted RBP7.94□□□□□ -1.14
CD44-233ENST00000531141 ERICH6Q7L0X2 663 aa7.94□□□□□ -1.14
CD44-233ENST00000531141 ANKLE1Q8NAG6 615 aa7.94□□□□□ -1.14
CD44-233ENST00000531141 SNRKQ9NRH2 765 aa7.94□□□□□ -1.14
CD44-233ENST00000531141 LRRN4Q8WUT4 740 aa7.93□□□□□ -1.14
CD44-233ENST00000531141 HMX1Q9NP08 348 aaPredicted RBP7.93□□□□□ -1.14
CD44-233ENST00000531141 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.93□□□□□ -1.14
CD44-233ENST00000531141 FCF1Q9Y324 198 aaKnown RBP7.93□□□□□ -1.14
CD44-233ENST00000531141 RNF223E7ERA6 249 aa7.92□□□□□ -1.14
CD44-233ENST00000531141 UBTFP17480 764 aaKnown RBP7.92□□□□□ -1.14
CD44-233ENST00000531141 PPP1R18Q6NYC8 613 aa7.92□□□□□ -1.14
CD44-233ENST00000531141 PNMA1Q8ND90 353 aa7.91□□□□□ -1.14
CD44-233ENST00000531141 GJD4Q96KN9 370 aaPredicted RBP7.91□□□□□ -1.14
CD44-233ENST00000531141 PRM3Q9NNZ6 103 aa7.91□□□□□ -1.14
CD44-233ENST00000531141 EVA1BQ9NVM1 165 aa7.91□□□□□ -1.14
CD44-233ENST00000531141 MAP10Q9P2G4 905 aa7.91□□□□□ -1.14
CD44-233ENST00000531141 NDUFB9Q9Y6M9 179 aa7.91□□□□□ -1.14
CD44-233ENST00000531141 CTHP32929 405 aa7.9□□□□□ -1.14
CD44-233ENST00000531141 KCNH2Q12809 1159 aa7.9□□□□□ -1.14
CD44-233ENST00000531141 TRIM34Q9BYJ4 488 aa7.9□□□□□ -1.14
CD44-233ENST00000531141 ZC3H4Q9UPT8 1303 aaKnown RBP7.89□□□□□ -1.15
CD44-233ENST00000531141 CCDC24Q8N4L8 307 aa7.89□□□□□ -1.15
CD44-233ENST00000531141 RAD21O60216 631 aa7.88□□□□□ -1.15
CD44-233ENST00000531141 NR6A1Q15406 480 aa7.88□□□□□ -1.15
CD44-233ENST00000531141 C14orf37Q86TY3 774 aa7.88□□□□□ -1.15
CD44-233ENST00000531141 ARMC2Q8NEN0 867 aa7.88□□□□□ -1.15
CD44-233ENST00000531141 PPEF1O14829 653 aaPredicted RBP7.87□□□□□ -1.15
CD44-233ENST00000531141 NBPF14Q5TI25 921 aa7.87□□□□□ -1.15
CD44-233ENST00000531141 UNC93B1Q9H1C4 597 aa7.87□□□□□ -1.15
CD44-233ENST00000531141 PLA2G2CQ5R387 149 aa7.86□□□□□ -1.15
CD44-233ENST00000531141 EPS8L1Q8TE68 723 aa7.86□□□□□ -1.15
CD44-233ENST00000531141 GPKOWQ92917 476 aaPredicted RBP eCLIP7.86□□□□□ -1.15
CD44-233ENST00000531141 FKBPLQ9UIM3 349 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms