RNA–Protein interactions for RNA: ENST00000528999.5

PUF60-213, Transcript of poly(U) binding splicing factor 60, human

TSL 3

Gene PUF60, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUF60-213	ENST00000528999	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	14.08	□□□□□ -0.16
PUF60-213	ENST00000528999	CFAP53	Q96M91	514 aa		14.08	□□□□□ -0.16
PUF60-213	ENST00000528999	SPATA31D1	Q6ZQQ2	1576 aa		14.08	□□□□□ -0.16
PUF60-213	ENST00000528999	ARHGEF28	Q8N1W1	1705 aa	Known RBP	14.07	□□□□□ -0.16
PUF60-213	ENST00000528999	DUSP27	Q5VZP5	1158 aa		14.07	□□□□□ -0.16
PUF60-213	ENST00000528999	SIRT1	Q96EB6	747 aa		14.07	□□□□□ -0.16
PUF60-213	ENST00000528999	SALL2	Q9Y467	1007 aa	Predicted RBP	14.07	□□□□□ -0.16
PUF60-213	ENST00000528999	YTHDC2	Q9H6S0	1430 aa	Known RBP	14.07	□□□□□ -0.16
PUF60-213	ENST00000528999		E9PSI1	815 aa		14.06	□□□□□ -0.16
PUF60-213	ENST00000528999	TERF2IP	Q9NYB0	399 aa		14.06	□□□□□ -0.16
PUF60-213	ENST00000528999	STAG3	Q9UJ98	1225 aa		14.06	□□□□□ -0.16
PUF60-213	ENST00000528999	DLC1	Q96QB1	1528 aa		14.05	□□□□□ -0.16
PUF60-213	ENST00000528999	FBXO31	Q5XUX0	539 aa	Predicted RBP	14.05	□□□□□ -0.16
PUF60-213	ENST00000528999	PLEKHH1	Q9ULM0	1364 aa		14.05	□□□□□ -0.16
PUF60-213	ENST00000528999	MED14	O60244	1454 aa		14.05	□□□□□ -0.16
PUF60-213	ENST00000528999	TULP4	Q9NRJ4	1543 aa		14.05	□□□□□ -0.16
PUF60-213	ENST00000528999	A2ML1	A8K2U0	1454 aa		14.04	□□□□□ -0.16
PUF60-213	ENST00000528999	PTPRM	P28827	1452 aa		14.04	□□□□□ -0.16
PUF60-213	ENST00000528999	ALK	Q9UM73	1620 aa		14.04	□□□□□ -0.16
PUF60-213	ENST00000528999	CCDC27	Q2M243	656 aa		14.03	□□□□□ -0.16
PUF60-213	ENST00000528999	RUNDC1	Q96C34	613 aa		14.03	□□□□□ -0.16
PUF60-213	ENST00000528999	POGK	Q9P215	609 aa		14.03	□□□□□ -0.16
PUF60-213	ENST00000528999	ABCC11	Q96J66	1382 aa		14.03	□□□□□ -0.16
PUF60-213	ENST00000528999	ARHGEF40	Q8TER5	1519 aa		14.02	□□□□□ -0.16
PUF60-213	ENST00000528999	APAF1	O14727	1248 aa		14.02	□□□□□ -0.17
PUF60-213	ENST00000528999	WDR63	Q8IWG1	891 aa		14.02	□□□□□ -0.17
PUF60-213	ENST00000528999	EXOC6	Q8TAG9	804 aa		14.02	□□□□□ -0.17
PUF60-213	ENST00000528999	ESF1	Q9H501	851 aa	Known RBP	14.02	□□□□□ -0.17
PUF60-213	ENST00000528999	CLTC	Q00610	1675 aa	Known RBP	14.01	□□□□□ -0.17
PUF60-213	ENST00000528999	TCERG1	O14776	1098 aa	Known RBP	14.01	□□□□□ -0.17
PUF60-213	ENST00000528999	NUTM2D	Q5VT03	806 aa	Predicted RBP	14.01	□□□□□ -0.17
PUF60-213	ENST00000528999	PRAM1	Q96QH2	718 aa		14.01	□□□□□ -0.17
PUF60-213	ENST00000528999	RIMS2	Q9UQ26	1411 aa		14	□□□□□ -0.17
PUF60-213	ENST00000528999	MS4A1	P11836	297 aa		14	□□□□□ -0.17
PUF60-213	ENST00000528999	SRPK2	P78362	688 aa	Known RBP	14	□□□□□ -0.17
PUF60-213	ENST00000528999	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	14	□□□□□ -0.17
PUF60-213	ENST00000528999	PHF23	Q9BUL5	403 aa	Predicted RBP	14	□□□□□ -0.17
PUF60-213	ENST00000528999	CABP2	Q9NPB3	220 aa		14	□□□□□ -0.17
PUF60-213	ENST00000528999	NKTR	P30414	1462 aa	Known RBP	13.99	□□□□□ -0.17
PUF60-213	ENST00000528999	ZMYM3	Q14202	1370 aa		13.99	□□□□□ -0.17
PUF60-213	ENST00000528999	MTHFS	P49914	203 aa		13.99	□□□□□ -0.17
PUF60-213	ENST00000528999	PNN	Q9H307	717 aa	Known RBP	13.99	□□□□□ -0.17
PUF60-213	ENST00000528999	STK26	Q9P289	416 aa		13.99	□□□□□ -0.17
PUF60-213	ENST00000528999	SENP3-EIF4A1	A0A087X0R7	540 aa		13.98	□□□□□ -0.17
PUF60-213	ENST00000528999	TSPOAP1	O95153	1857 aa		13.97	□□□□□ -0.17
PUF60-213	ENST00000528999	MYO5B	Q9ULV0	1848 aa		13.97	□□□□□ -0.17
PUF60-213	ENST00000528999	AAMP	Q13685	434 aa		13.97	□□□□□ -0.17
PUF60-213	ENST00000528999	WWC1	Q8IX03	1113 aa		13.97	□□□□□ -0.17
PUF60-213	ENST00000528999	CCDC146	Q8IYE0	955 aa		13.97	□□□□□ -0.17
PUF60-213	ENST00000528999	CDK19	Q9BWU1	502 aa		13.97	□□□□□ -0.17
PUF60-213	ENST00000528999	FAM135B	Q49AJ0	1406 aa		13.96	□□□□□ -0.18
PUF60-213	ENST00000528999		A0A1W2PP64	1363 aa		13.96	□□□□□ -0.18
PUF60-213	ENST00000528999	PDE3A	Q14432	1141 aa		13.95	□□□□□ -0.18
PUF60-213	ENST00000528999	KIF13A	Q9H1H9	1805 aa		13.94	□□□□□ -0.18
PUF60-213	ENST00000528999	ATP7B	P35670	1465 aa		13.94	□□□□□ -0.18
PUF60-213	ENST00000528999	FYB1	O15117	783 aa		13.94	□□□□□ -0.18
PUF60-213	ENST00000528999	CT47B1	P0C2W7	299 aa	Predicted RBP	13.94	□□□□□ -0.18
PUF60-213	ENST00000528999	CRBN	Q96SW2	442 aa		13.94	□□□□□ -0.18
PUF60-213	ENST00000528999	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.93	□□□□□ -0.18
PUF60-213	ENST00000528999	TECPR2	O15040	1411 aa		13.93	□□□□□ -0.18
PUF60-213	ENST00000528999	TCP11L2	Q8N4U5	519 aa		13.93	□□□□□ -0.18
PUF60-213	ENST00000528999	ANP32E	Q9BTT0	268 aa		13.93	□□□□□ -0.18
PUF60-213	ENST00000528999	SHPRH	Q149N8	1683 aa		13.93	□□□□□ -0.18
PUF60-213	ENST00000528999	TNR	Q92752	1358 aa		13.93	□□□□□ -0.18
PUF60-213	ENST00000528999	CD163L1	Q9NR16	1453 aa		13.93	□□□□□ -0.18
PUF60-213	ENST00000528999	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.92	□□□□□ -0.18
PUF60-213	ENST00000528999	PNPLA6	Q8IY17	1366 aa		13.92	□□□□□ -0.18
PUF60-213	ENST00000528999	IQSEC2	Q5JU85	1478 aa		13.92	□□□□□ -0.18
PUF60-213	ENST00000528999	PLIN1	O60240	522 aa		13.91	□□□□□ -0.18
PUF60-213	ENST00000528999	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
PUF60-213	ENST00000528999	MYH16	Q9H6N6	1097 aa		13.91	□□□□□ -0.18
PUF60-213	ENST00000528999	WASL	O00401	505 aa	Predicted RBP	13.9	□□□□□ -0.18
PUF60-213	ENST00000528999	TNNT2	P45379	298 aa	Predicted RBP	13.9	□□□□□ -0.18
PUF60-213	ENST00000528999	CABP1	Q9NZU7	370 aa		13.9	□□□□□ -0.18
PUF60-213	ENST00000528999	NLRP1	Q9C000	1473 aa		13.9	□□□□□ -0.18
PUF60-213	ENST00000528999	SETD1A	O15047	1707 aa	Known RBP	13.9	□□□□□ -0.18
PUF60-213	ENST00000528999	IL16	Q14005	1332 aa		13.9	□□□□□ -0.19
PUF60-213	ENST00000528999	TMEM2	Q9UHN6	1383 aa		13.89	□□□□□ -0.19
PUF60-213	ENST00000528999	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.89	□□□□□ -0.19
PUF60-213	ENST00000528999	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
PUF60-213	ENST00000528999	MLEC	Q14165	292 aa		13.89	□□□□□ -0.19
PUF60-213	ENST00000528999	ZNF692	Q9BU19	519 aa	Predicted RBP	13.89	□□□□□ -0.19
PUF60-213	ENST00000528999	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.89	□□□□□ -0.19
PUF60-213	ENST00000528999	ANKRD26	Q9UPS8	1709 aa		13.89	□□□□□ -0.19
PUF60-213	ENST00000528999	KDM2B	Q8NHM5	1336 aa		13.88	□□□□□ -0.19
PUF60-213	ENST00000528999	DIAPH1	O60610	1272 aa	Known RBP	13.87	□□□□□ -0.19
PUF60-213	ENST00000528999	FCHSD2	O94868	740 aa		13.87	□□□□□ -0.19
PUF60-213	ENST00000528999	PLEKHF1	Q96S99	279 aa		13.87	□□□□□ -0.19
PUF60-213	ENST00000528999	GGNBP2	Q9H3C7	697 aa		13.87	□□□□□ -0.19
PUF60-213	ENST00000528999	CCDC61	Q9Y6R9	512 aa		13.87	□□□□□ -0.19
PUF60-213	ENST00000528999	CPSF1	Q10570	1443 aa	Known RBP	13.87	□□□□□ -0.19
PUF60-213	ENST00000528999	KNDC1	Q76NI1	1749 aa		13.87	□□□□□ -0.19
PUF60-213	ENST00000528999	EDC4	Q6P2E9	1401 aa	Known RBP	13.86	□□□□□ -0.19
PUF60-213	ENST00000528999	ADGRB2	O60241	1585 aa		13.86	□□□□□ -0.19
PUF60-213	ENST00000528999	COL3A1	P02461	1466 aa	Predicted RBP	13.86	□□□□□ -0.19
PUF60-213	ENST00000528999	PLEKHG1	Q9ULL1	1385 aa		13.85	□□□□□ -0.19
PUF60-213	ENST00000528999	C20orf194	Q5TEA3	1177 aa		13.85	□□□□□ -0.19
PUF60-213	ENST00000528999	WAPL	Q7Z5K2	1190 aa		13.85	□□□□□ -0.19
PUF60-213	ENST00000528999	NRXN3	Q9Y4C0	1643 aa		13.85	□□□□□ -0.19
PUF60-213	ENST00000528999	MET	P08581	1390 aa		13.84	□□□□□ -0.19

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