RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SLIT1O75093 1534 aa27.93■■■□□ 2.06
VPS28-209ENST00000528142 POGKQ9P215 609 aa27.92■■■□□ 2.06
VPS28-209ENST00000528142 ABCC11Q96J66 1382 aa27.92■■■□□ 2.06
VPS28-209ENST00000528142 KDM4FA0A1W2PPD8 638 aa27.92■■■□□ 2.06
VPS28-209ENST00000528142 ZNF142P52746 1687 aaPredicted RBP27.91■■■□□ 2.06
VPS28-209ENST00000528142 SETD1BQ9UPS6 1966 aaKnown RBP27.9■■■□□ 2.06
VPS28-209ENST00000528142 CABP2Q9NPB3 220 aa27.9■■■□□ 2.06
VPS28-209ENST00000528142 METP08581 1390 aa27.9■■■□□ 2.06
VPS28-209ENST00000528142 MINK1Q8N4C8 1332 aaPredicted RBP27.88■■■□□ 2.05
VPS28-209ENST00000528142 INSRP06213 1382 aa27.88■■■□□ 2.05
VPS28-209ENST00000528142 NSD3Q9BZ95 1437 aa27.87■■■□□ 2.05
VPS28-209ENST00000528142 THEMISQ8N1K5 641 aaPredicted RBP27.86■■■□□ 2.05
VPS28-209ENST00000528142 SUPT16HQ9Y5B9 1047 aaKnown RBP27.85■■■□□ 2.05
VPS28-209ENST00000528142 ANKRD36BQ8N2N9 1353 aa27.85■■■□□ 2.05
VPS28-209ENST00000528142 NINLQ9Y2I6 1382 aa27.85■■■□□ 2.05
VPS28-209ENST00000528142 TXNDC2Q86VQ3 553 aa27.84■■■□□ 2.05
VPS28-209ENST00000528142 SRPK2P78362 688 aaKnown RBP27.83■■■□□ 2.05
VPS28-209ENST00000528142 ATAD2Q6PL18 1390 aa27.83■■■□□ 2.05
VPS28-209ENST00000528142 PLEKHG1Q9ULL1 1385 aa27.82■■■□□ 2.04
VPS28-209ENST00000528142 WAPLQ7Z5K2 1190 aa27.82■■■□□ 2.04
VPS28-209ENST00000528142 PLEKHH1Q9ULM0 1364 aa27.82■■■□□ 2.04
VPS28-209ENST00000528142 ADAMTS13Q76LX8 1427 aa27.82■■■□□ 2.04
VPS28-209ENST00000528142 SIRT1Q96EB6 747 aa27.81■■■□□ 2.04
VPS28-209ENST00000528142 TECPR2O15040 1411 aa27.81■■■□□ 2.04
VPS28-209ENST00000528142 USP32Q8NFA0 1604 aa27.81■■■□□ 2.04
VPS28-209ENST00000528142 CDK19Q9BWU1 502 aa27.79■■■□□ 2.04
VPS28-209ENST00000528142 BLMP54132 1417 aaPredicted RBP27.78■■■□□ 2.04
VPS28-209ENST00000528142 MED14O60244 1454 aa27.77■■■□□ 2.04
VPS28-209ENST00000528142 FAM135BQ49AJ0 1406 aa27.77■■■□□ 2.04
VPS28-209ENST00000528142 BCANQ96GW7 911 aa27.76■■■□□ 2.04
VPS28-209ENST00000528142 EID1Q9Y6B2 187 aa27.76■■■□□ 2.04
VPS28-209ENST00000528142 CGNL1Q0VF96 1302 aa27.76■■■□□ 2.03
VPS28-209ENST00000528142 KNDC1Q76NI1 1749 aa27.75■■■□□ 2.03
VPS28-209ENST00000528142 SMG6Q86US8 1419 aaKnown RBP27.74■■■□□ 2.03
VPS28-209ENST00000528142 A0A1W2PP64 1363 aa27.74■■■□□ 2.03
VPS28-209ENST00000528142 FKBP8Q14318 412 aa27.73■■■□□ 2.03
VPS28-209ENST00000528142 CPS1P31327 1500 aa27.73■■■□□ 2.03
VPS28-209ENST00000528142 CD163L1Q9NR16 1453 aa27.73■■■□□ 2.03
VPS28-209ENST00000528142 ADAMTS8Q9UP79 889 aa27.72■■■□□ 2.03
VPS28-209ENST00000528142 SENP3-EIF4A1A0A087X0R7 540 aa27.71■■■□□ 2.03
VPS28-209ENST00000528142 MORC1Q86VD1 984 aa27.71■■■□□ 2.03
VPS28-209ENST00000528142 SLC26A8Q96RN1 970 aa27.71■■■□□ 2.03
VPS28-209ENST00000528142 NSD2O96028 1365 aa27.71■■■□□ 2.03
VPS28-209ENST00000528142 NEFLP07196 543 aa27.71■■■□□ 2.03
VPS28-209ENST00000528142 TERF2IPQ9NYB0 399 aa27.69■■■□□ 2.02
VPS28-209ENST00000528142 NUDCQ9Y266 331 aa27.68■■■□□ 2.02
VPS28-209ENST00000528142 WASLO00401 505 aaPredicted RBP27.67■■■□□ 2.02
VPS28-209ENST00000528142 WDR43Q15061 677 aaKnown RBP eCLIP27.67■■■□□ 2.02
VPS28-209ENST00000528142 CABP1Q9NZU7 370 aa27.67■■■□□ 2.02
VPS28-209ENST00000528142 POLR3AO14802 1390 aaPredicted RBP27.66■■■□□ 2.02
VPS28-209ENST00000528142 ROBO2Q9HCK4 1378 aa27.66■■■□□ 2.02
VPS28-209ENST00000528142 PTPRUQ92729 1446 aa27.66■■■□□ 2.02
VPS28-209ENST00000528142 ANKLE2Q86XL3 938 aa27.65■■■□□ 2.02
VPS28-209ENST00000528142 TBX22Q9Y458 520 aa27.65■■■□□ 2.02
VPS28-209ENST00000528142 HDGFL2Q7Z4V5 671 aaPredicted RBP27.62■■■□□ 2.01
VPS28-209ENST00000528142 ATP7BP35670 1465 aa27.6■■■□□ 2.01
VPS28-209ENST00000528142 PDE3BQ13370 1112 aa27.6■■■□□ 2.01
VPS28-209ENST00000528142 NCKAP5LQ9HCH0 1330 aa27.6■■■□□ 2.01
VPS28-209ENST00000528142 DIP2AQ14689 1571 aa27.59■■■□□ 2.01
VPS28-209ENST00000528142 TNNT2P45379 298 aaPredicted RBP27.59■■■□□ 2.01
VPS28-209ENST00000528142 FYB1O15117 783 aa27.58■■■□□ 2.01
VPS28-209ENST00000528142 SALL2Q9Y467 1007 aaPredicted RBP27.57■■■□□ 2
VPS28-209ENST00000528142 LMTK3Q96Q04 1460 aa27.56■■■□□ 2
VPS28-209ENST00000528142 HSPA2P54652 639 aa27.55■■■□□ 2
VPS28-209ENST00000528142 NUDT16Q96DE0 195 aaKnown RBP27.55■■■□□ 2
VPS28-209ENST00000528142 CPSF1Q10570 1443 aaKnown RBP27.55■■■□□ 2
VPS28-209ENST00000528142 MTHFSP49914 203 aa27.55■■■□□ 2
VPS28-209ENST00000528142 AMOTL2Q9Y2J4 779 aa27.55■■■□□ 2
VPS28-209ENST00000528142 ADGRB2O60241 1585 aa27.54■■■□□ 2
VPS28-209ENST00000528142 NPHP4O75161 1426 aaPredicted RBP27.54■■■□□ 2
VPS28-209ENST00000528142 GGNBP2Q9H3C7 697 aa27.54■■■□□ 2
VPS28-209ENST00000528142 PPIP5K1Q6PFW1 1433 aa27.54■■■□□ 2
VPS28-209ENST00000528142 CCDC61Q9Y6R9 512 aa27.53■■■□□ 2
VPS28-209ENST00000528142 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.52■■■□□ 2
VPS28-209ENST00000528142 XRN1Q8IZH2 1706 aaKnown RBP27.52■■■□□ 2
VPS28-209ENST00000528142 PTCH1Q13635 1447 aa27.51■■□□□ 1.99
VPS28-209ENST00000528142 RNF123Q5XPI4 1314 aa27.5■■□□□ 1.99
VPS28-209ENST00000528142 PRR36Q9H6K5 1346 aa27.5■■□□□ 1.99
VPS28-209ENST00000528142 SHPRHQ149N8 1683 aa27.48■■□□□ 1.99
VPS28-209ENST00000528142 CDCA7LQ96GN5 454 aa27.48■■□□□ 1.99
VPS28-209ENST00000528142 CFAP53Q96M91 514 aa27.48■■□□□ 1.99
VPS28-209ENST00000528142 ANKRD26Q9UPS8 1709 aa27.48■■□□□ 1.99
VPS28-209ENST00000528142 CHD2O14647 1828 aaKnown RBP27.47■■□□□ 1.99
VPS28-209ENST00000528142 ZNF521Q96K83 1311 aa27.47■■□□□ 1.99
VPS28-209ENST00000528142 CDC42BPGQ6DT37 1551 aa27.46■■□□□ 1.99
VPS28-209ENST00000528142 IRX6P78412 446 aaPredicted RBP27.46■■□□□ 1.99
VPS28-209ENST00000528142 ERICH6BQ5W0A0 696 aa27.46■■□□□ 1.99
VPS28-209ENST00000528142 CCDC146Q8IYE0 955 aa27.46■■□□□ 1.99
VPS28-209ENST00000528142 PIK3R4Q99570 1358 aa27.46■■□□□ 1.99
VPS28-209ENST00000528142 EDC4Q6P2E9 1401 aaKnown RBP27.46■■□□□ 1.99
VPS28-209ENST00000528142 KCNA6P17658 529 aa27.44■■□□□ 1.98
VPS28-209ENST00000528142 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.43■■□□□ 1.98
VPS28-209ENST00000528142 KIF20BQ96Q89 1820 aa27.42■■□□□ 1.98
VPS28-209ENST00000528142 APAF1O14727 1248 aa27.41■■□□□ 1.98
VPS28-209ENST00000528142 STRCQ7RTU9 1775 aa27.41■■□□□ 1.98
VPS28-209ENST00000528142 ZNF692Q9BU19 519 aaPredicted RBP27.4■■□□□ 1.98
VPS28-209ENST00000528142 PLEKHG3A1L390 1219 aa27.39■■□□□ 1.98
VPS28-209ENST00000528142 NGEFQ8N5V2 710 aa27.39■■□□□ 1.98
VPS28-209ENST00000528142 COL3A1P02461 1466 aaPredicted RBP27.37■■□□□ 1.97
VPS28-209ENST00000528142 TOPAZ1Q8N9V7 1692 aa27.37■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms