RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 LMOD2Q6P5Q4 547 aa7.67□□□□□ -1.18
CD44-225ENST00000527326 FRAT1Q92837 279 aaPredicted RBP7.67□□□□□ -1.18
CD44-225ENST00000527326 TNIKQ9UKE5 1360 aa7.67□□□□□ -1.18
CD44-225ENST00000527326 HMGXB3Q12766 1538 aa7.67□□□□□ -1.18
CD44-225ENST00000527326 CANXP27824 592 aaKnown RBP7.66□□□□□ -1.18
CD44-225ENST00000527326 CLCN1P35523 988 aa7.66□□□□□ -1.18
CD44-225ENST00000527326 L1TD1Q5T7N2 865 aaKnown RBP7.66□□□□□ -1.18
CD44-225ENST00000527326 RBM46Q8TBY0 533 aaKnown RBP7.66□□□□□ -1.18
CD44-225ENST00000527326 ZNF516Q92618 1163 aa7.66□□□□□ -1.18
CD44-225ENST00000527326 TRIM52Q96A61 297 aa7.66□□□□□ -1.18
CD44-225ENST00000527326 LAS1LQ9Y4W2 734 aaKnown RBP7.66□□□□□ -1.18
CD44-225ENST00000527326 FCHSD2O94868 740 aa7.65□□□□□ -1.18
CD44-225ENST00000527326 CNGB1Q14028 1251 aaPredicted RBP7.65□□□□□ -1.18
CD44-225ENST00000527326 FAM161AQ3B820 660 aa7.65□□□□□ -1.18
CD44-225ENST00000527326 ADGRG1Q9Y653 693 aa7.65□□□□□ -1.18
CD44-225ENST00000527326 DNAJB2P25686 324 aa7.64□□□□□ -1.19
CD44-225ENST00000527326 COPS2P61201 443 aa7.64□□□□□ -1.19
CD44-225ENST00000527326 MAP7D2Q96T17 732 aa7.64□□□□□ -1.19
CD44-225ENST00000527326 PPP1R15AO75807 674 aaPredicted RBP7.63□□□□□ -1.19
CD44-225ENST00000527326 RRAGDQ9NQL2 400 aaPredicted RBP7.63□□□□□ -1.19
CD44-225ENST00000527326 RCCD1A6NED2 376 aa7.62□□□□□ -1.19
CD44-225ENST00000527326 IRX6P78412 446 aaPredicted RBP7.62□□□□□ -1.19
CD44-225ENST00000527326 NFKBIBQ15653 356 aa7.62□□□□□ -1.19
CD44-225ENST00000527326 B4GALNT3Q6L9W6 998 aa7.62□□□□□ -1.19
CD44-225ENST00000527326 PPP1R18Q6NYC8 613 aa7.62□□□□□ -1.19
CD44-225ENST00000527326 SMAP1Q8IYB5 467 aaPredicted RBP7.62□□□□□ -1.19
CD44-225ENST00000527326 NKX2-3Q8TAU0 364 aa7.62□□□□□ -1.19
CD44-225ENST00000527326 TESPA1A2RU30 521 aaPredicted RBP7.61□□□□□ -1.19
CD44-225ENST00000527326 TCERG1O14776 1098 aaKnown RBP7.61□□□□□ -1.19
CD44-225ENST00000527326 GTF2E1P29083 439 aaPredicted RBP7.61□□□□□ -1.19
CD44-225ENST00000527326 RBM26Q5T8P6 1007 aaKnown RBP7.61□□□□□ -1.19
CD44-225ENST00000527326 SMYD5Q6GMV2 418 aa7.61□□□□□ -1.19
CD44-225ENST00000527326 HOMEZQ8IX15 550 aa7.61□□□□□ -1.19
CD44-225ENST00000527326 PRR14Q9BWN1 585 aa7.61□□□□□ -1.19
CD44-225ENST00000527326 TMEM134Q9H6X4 195 aa7.61□□□□□ -1.19
CD44-225ENST00000527326 LAMC3Q9Y6N6 1575 aa7.6□□□□□ -1.19
CD44-225ENST00000527326 PRKD2Q9BZL6 878 aa7.6□□□□□ -1.19
CD44-225ENST00000527326 PCDHB3Q9Y5E6 796 aa7.6□□□□□ -1.19
CD44-225ENST00000527326 SMARCA4P51532 1647 aa7.6□□□□□ -1.19
CD44-225ENST00000527326 PEG3Q9GZU2 1588 aa7.59□□□□□ -1.19
CD44-225ENST00000527326 ARID4BQ4LE39 1312 aaPredicted RBP7.59□□□□□ -1.19
CD44-225ENST00000527326 OATP04181 439 aa7.59□□□□□ -1.19
CD44-225ENST00000527326 MS4A1P11836 297 aa7.59□□□□□ -1.19
CD44-225ENST00000527326 RGS3P49796 1198 aa7.59□□□□□ -1.19
CD44-225ENST00000527326 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.59□□□□□ -1.19
CD44-225ENST00000527326 ATAD2BQ9ULI0 1458 aa7.59□□□□□ -1.19
CD44-225ENST00000527326 ZPR1O75312 459 aa7.58□□□□□ -1.2
CD44-225ENST00000527326 BRPF1P55201 1214 aaPredicted RBP7.58□□□□□ -1.2
CD44-225ENST00000527326 HNRNPUQ00839 825 aaKnown RBP eCLIP7.58□□□□□ -1.2
CD44-225ENST00000527326 DDX10Q13206 875 aaKnown RBP7.58□□□□□ -1.2
CD44-225ENST00000527326 UTP14CQ5TAP6 766 aaKnown RBP7.58□□□□□ -1.2
CD44-225ENST00000527326 DCAF11Q8TEB1 546 aa7.58□□□□□ -1.2
CD44-225ENST00000527326 THOC2Q8NI27 1593 aaKnown RBP7.58□□□□□ -1.2
CD44-225ENST00000527326 BAZ1AQ9NRL2 1556 aaPredicted RBP7.58□□□□□ -1.2
CD44-225ENST00000527326 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.57□□□□□ -1.2
CD44-225ENST00000527326 GGCXP38435 758 aa7.57□□□□□ -1.2
CD44-225ENST00000527326 HIC1Q14526 733 aa7.57□□□□□ -1.2
CD44-225ENST00000527326 KMT5BQ4FZB7 885 aa7.57□□□□□ -1.2
CD44-225ENST00000527326 BLOC1S3Q6QNY0 202 aa7.57□□□□□ -1.2
CD44-225ENST00000527326 MTERF4Q7Z6M4 381 aaKnown RBP7.57□□□□□ -1.2
CD44-225ENST00000527326 TEX2Q8IWB9 1127 aa7.57□□□□□ -1.2
CD44-225ENST00000527326 FTSJ3Q8IY81 847 aaKnown RBP7.57□□□□□ -1.2
CD44-225ENST00000527326 ZC3H15Q8WU90 426 aaKnown RBP7.57□□□□□ -1.2
CD44-225ENST00000527326 BAZ1BQ9UIG0 1483 aaKnown RBP7.56□□□□□ -1.2
CD44-225ENST00000527326 Q6ZNB5 142 aa7.56□□□□□ -1.2
CD44-225ENST00000527326 PXYLP1Q8TE99 480 aa7.56□□□□□ -1.2
CD44-225ENST00000527326 CHMP4BQ9H444 224 aaKnown RBP7.56□□□□□ -1.2
CD44-225ENST00000527326 GFRA3O60609 400 aa7.55□□□□□ -1.2
CD44-225ENST00000527326 CFHP08603 1231 aa7.55□□□□□ -1.2
CD44-225ENST00000527326 TERF1P54274 439 aa7.55□□□□□ -1.2
CD44-225ENST00000527326 GNPATO15228 680 aa7.54□□□□□ -1.2
CD44-225ENST00000527326 ACTN4O43707 911 aaKnown RBP7.54□□□□□ -1.2
CD44-225ENST00000527326 SLC10A3P09131 477 aa7.54□□□□□ -1.2
CD44-225ENST00000527326 TNNT2P45379 298 aaPredicted RBP7.54□□□□□ -1.2
CD44-225ENST00000527326 C14orf37Q86TY3 774 aa7.54□□□□□ -1.2
CD44-225ENST00000527326 METTL3Q86U44 580 aaKnown RBP7.54□□□□□ -1.2
CD44-225ENST00000527326 BCCIPQ9P287 314 aaKnown RBP eCLIP7.54□□□□□ -1.2
CD44-225ENST00000527326 V9GY48 417 aaPredicted RBP7.54□□□□□ -1.2
CD44-225ENST00000527326 ZBED9Q6R2W3 1325 aa7.53□□□□□ -1.2
CD44-225ENST00000527326 PDS5BQ9NTI5 1447 aa7.53□□□□□ -1.2
CD44-225ENST00000527326 FECHP22830 423 aa7.53□□□□□ -1.2
CD44-225ENST00000527326 LAPTM4AQ15012 233 aa7.53□□□□□ -1.2
CD44-225ENST00000527326 TAF3Q5VWG9 929 aa7.53□□□□□ -1.2
CD44-225ENST00000527326 NPM2Q86SE8 214 aaKnown RBP7.53□□□□□ -1.2
CD44-225ENST00000527326 TMUB1Q9BVT8 246 aa7.53□□□□□ -1.2
CD44-225ENST00000527326 KIF21AQ7Z4S6 1674 aa7.53□□□□□ -1.2
CD44-225ENST00000527326 RNF123Q5XPI4 1314 aa7.52□□□□□ -1.2
CD44-225ENST00000527326 RSF1Q96T23 1441 aaPredicted RBP7.52□□□□□ -1.2
CD44-225ENST00000527326 CEP164Q9UPV0 1460 aa7.52□□□□□ -1.21
CD44-225ENST00000527326 CHMP4AQ9BY43 222 aa7.52□□□□□ -1.21
CD44-225ENST00000527326 BACH2Q9BYV9 841 aa7.52□□□□□ -1.21
CD44-225ENST00000527326 SLC24A3Q9HC58 644 aa7.52□□□□□ -1.21
CD44-225ENST00000527326 SMG6Q86US8 1419 aaKnown RBP7.52□□□□□ -1.21
CD44-225ENST00000527326 TLL1O43897 1013 aa7.51□□□□□ -1.21
CD44-225ENST00000527326 ANP32BQ92688 251 aaKnown RBP7.51□□□□□ -1.21
CD44-225ENST00000527326 GOLGA3Q08378 1498 aa7.5□□□□□ -1.21
CD44-225ENST00000527326 NESP48681 1621 aa7.5□□□□□ -1.21
CD44-225ENST00000527326 GPR37O15354 613 aa7.5□□□□□ -1.21
CD44-225ENST00000527326 NR1I2O75469 434 aa7.5□□□□□ -1.21
CD44-225ENST00000527326 KIF20AO95235 890 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms