RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 PUS7Q96PZ0 661 aaKnown RBP25.91■■□□□ 1.74
VPS28-207ENST00000526977 WAPLQ7Z5K2 1190 aa25.9■■□□□ 1.74
VPS28-207ENST00000526977 PTPRUQ92729 1446 aa25.9■■□□□ 1.74
VPS28-207ENST00000526977 PRKRIP1Q9H875 184 aaPredicted RBP25.9■■□□□ 1.74
VPS28-207ENST00000526977 CPS1P31327 1500 aa25.89■■□□□ 1.74
VPS28-207ENST00000526977 HSPA2P54652 639 aa25.88■■□□□ 1.73
VPS28-207ENST00000526977 MINK1Q8N4C8 1332 aaPredicted RBP25.86■■□□□ 1.73
VPS28-207ENST00000526977 ROBO2Q9HCK4 1378 aa25.86■■□□□ 1.73
VPS28-207ENST00000526977 PLEKHH1Q9ULM0 1364 aa25.85■■□□□ 1.73
VPS28-207ENST00000526977 PTCH1Q13635 1447 aa25.85■■□□□ 1.73
VPS28-207ENST00000526977 TULP4Q9NRJ4 1543 aa25.8■■□□□ 1.72
VPS28-207ENST00000526977 KCNA6P17658 529 aa25.8■■□□□ 1.72
VPS28-207ENST00000526977 XRN1Q8IZH2 1706 aaKnown RBP25.8■■□□□ 1.72
VPS28-207ENST00000526977 SRPK2P78362 688 aaKnown RBP25.78■■□□□ 1.72
VPS28-207ENST00000526977 CHD2O14647 1828 aaKnown RBP25.78■■□□□ 1.72
VPS28-207ENST00000526977 CDK19Q9BWU1 502 aa25.78■■□□□ 1.72
VPS28-207ENST00000526977 CCDC184Q52MB2 194 aa25.77■■□□□ 1.72
VPS28-207ENST00000526977 PANK3Q9H999 370 aa25.77■■□□□ 1.72
VPS28-207ENST00000526977 CABP2Q9NPB3 220 aa25.77■■□□□ 1.72
VPS28-207ENST00000526977 WASLO00401 505 aaPredicted RBP25.76■■□□□ 1.71
VPS28-207ENST00000526977 ATAD2Q6PL18 1390 aa25.75■■□□□ 1.71
VPS28-207ENST00000526977 NINLQ9Y2I6 1382 aa25.72■■□□□ 1.71
VPS28-207ENST00000526977 PER1O15534 1290 aaPredicted RBP25.72■■□□□ 1.71
VPS28-207ENST00000526977 TMC1Q8TDI8 760 aa25.71■■□□□ 1.71
VPS28-207ENST00000526977 SLC12A5Q9H2X9 1139 aa25.7■■□□□ 1.7
VPS28-207ENST00000526977 ADGRB2O60241 1585 aa25.69■■□□□ 1.7
VPS28-207ENST00000526977 MYOM1P52179 1685 aa25.69■■□□□ 1.7
VPS28-207ENST00000526977 STRCQ7RTU9 1775 aa25.69■■□□□ 1.7
VPS28-207ENST00000526977 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.69■■□□□ 1.7
VPS28-207ENST00000526977 NWD1Q149M9 1564 aa25.68■■□□□ 1.7
VPS28-207ENST00000526977 MRS2Q9HD23 443 aa25.67■■□□□ 1.7
VPS28-207ENST00000526977 DMRT2Q9Y5R5 561 aa25.67■■□□□ 1.7
VPS28-207ENST00000526977 KNSTRNQ9Y448 316 aa25.66■■□□□ 1.7
VPS28-207ENST00000526977 CNGB1Q14028 1251 aaPredicted RBP25.64■■□□□ 1.7
VPS28-207ENST00000526977 NKTRP30414 1462 aaKnown RBP25.63■■□□□ 1.69
VPS28-207ENST00000526977 NUDT16Q96DE0 195 aaKnown RBP25.63■■□□□ 1.69
VPS28-207ENST00000526977 CCDC61Q9Y6R9 512 aa25.63■■□□□ 1.69
VPS28-207ENST00000526977 ANKRD36BQ8N2N9 1353 aa25.62■■□□□ 1.69
VPS28-207ENST00000526977 PROSER2Q86WR7 435 aaPredicted RBP25.61■■□□□ 1.69
VPS28-207ENST00000526977 TERF2IPQ9NYB0 399 aa25.61■■□□□ 1.69
VPS28-207ENST00000526977 CABP1Q9NZU7 370 aa25.61■■□□□ 1.69
VPS28-207ENST00000526977 KTN1Q86UP2 1357 aaKnown RBP25.61■■□□□ 1.69
VPS28-207ENST00000526977 CARD14Q9BXL6 1004 aa25.6■■□□□ 1.69
VPS28-207ENST00000526977 HNRNPUQ00839 825 aaKnown RBP eCLIP25.59■■□□□ 1.69
VPS28-207ENST00000526977 RALBP1Q15311 655 aa25.58■■□□□ 1.68
VPS28-207ENST00000526977 HDGFL2Q7Z4V5 671 aaPredicted RBP25.58■■□□□ 1.68
VPS28-207ENST00000526977 FAM9BQ8IZU0 186 aa25.58■■□□□ 1.68
VPS28-207ENST00000526977 ADGRL3Q9HAR2 1447 aa25.57■■□□□ 1.68
VPS28-207ENST00000526977 NPC1L1Q9UHC9 1359 aa25.57■■□□□ 1.68
VPS28-207ENST00000526977 PPIP5K1Q6PFW1 1433 aa25.56■■□□□ 1.68
VPS28-207ENST00000526977 NCOA3Q9Y6Q9 1424 aa25.56■■□□□ 1.68
VPS28-207ENST00000526977 ATP7BP35670 1465 aa25.56■■□□□ 1.68
VPS28-207ENST00000526977 AMER1Q5JTC6 1135 aaPredicted RBP25.56■■□□□ 1.68
VPS28-207ENST00000526977 C14orf37Q86TY3 774 aa25.56■■□□□ 1.68
VPS28-207ENST00000526977 PRR36Q9H6K5 1346 aa25.56■■□□□ 1.68
VPS28-207ENST00000526977 RBM33Q96EV2 1170 aaKnown RBP25.55■■□□□ 1.68
VPS28-207ENST00000526977 A0A1W2PP64 1363 aa25.54■■□□□ 1.68
VPS28-207ENST00000526977 CDC42BPGQ6DT37 1551 aa25.53■■□□□ 1.68
VPS28-207ENST00000526977 ANKARQ7Z5J8 1434 aa25.53■■□□□ 1.68
VPS28-207ENST00000526977 NSD3Q9BZ95 1437 aa25.53■■□□□ 1.68
VPS28-207ENST00000526977 CC2D1BQ5T0F9 858 aaKnown RBP25.53■■□□□ 1.68
VPS28-207ENST00000526977 CD163L1Q9NR16 1453 aa25.52■■□□□ 1.68
VPS28-207ENST00000526977 PLEKHG3A1L390 1219 aa25.52■■□□□ 1.68
VPS28-207ENST00000526977 C19orf44Q9H6X5 657 aa25.51■■□□□ 1.67
VPS28-207ENST00000526977 NALCNQ8IZF0 1738 aa25.51■■□□□ 1.67
VPS28-207ENST00000526977 NUTM2FA1L443 756 aa25.51■■□□□ 1.67
VPS28-207ENST00000526977 ZNF692Q9BU19 519 aaPredicted RBP25.51■■□□□ 1.67
VPS28-207ENST00000526977 PARD3Q8TEW0 1356 aa25.5■■□□□ 1.67
VPS28-207ENST00000526977 CGNL1Q0VF96 1302 aa25.5■■□□□ 1.67
VPS28-207ENST00000526977 TMEM94Q12767 1356 aa25.5■■□□□ 1.67
VPS28-207ENST00000526977 STRCP1A6NGW2 1772 aa25.49■■□□□ 1.67
VPS28-207ENST00000526977 CPSF1Q10570 1443 aaKnown RBP25.49■■□□□ 1.67
VPS28-207ENST00000526977 MYBBP1AQ9BQG0 1328 aaKnown RBP25.48■■□□□ 1.67
VPS28-207ENST00000526977 ZNF335Q9H4Z2 1342 aaPredicted RBP25.47■■□□□ 1.67
VPS28-207ENST00000526977 FMN2Q9NZ56 1722 aa25.47■■□□□ 1.67
VPS28-207ENST00000526977 USP32Q8NFA0 1604 aa25.45■■□□□ 1.66
VPS28-207ENST00000526977 PNISRQ8TF01 805 aaKnown RBP25.45■■□□□ 1.66
VPS28-207ENST00000526977 TOPAZ1Q8N9V7 1692 aa25.45■■□□□ 1.66
VPS28-207ENST00000526977 NSD2O96028 1365 aa25.44■■□□□ 1.66
VPS28-207ENST00000526977 BRD4O60885 1362 aaPredicted RBP25.43■■□□□ 1.66
VPS28-207ENST00000526977 ACEP12821 1306 aa25.43■■□□□ 1.66
VPS28-207ENST00000526977 ITSN1Q15811 1721 aa25.43■■□□□ 1.66
VPS28-207ENST00000526977 DCCP43146 1447 aa25.42■■□□□ 1.66
VPS28-207ENST00000526977 ATF3P18847 181 aa25.41■■□□□ 1.66
VPS28-207ENST00000526977 EDC4Q6P2E9 1401 aaKnown RBP25.41■■□□□ 1.66
VPS28-207ENST00000526977 AEBP2Q6ZN18 517 aaPredicted RBP25.41■■□□□ 1.66
VPS28-207ENST00000526977 POLR3AO14802 1390 aaPredicted RBP25.4■■□□□ 1.66
VPS28-207ENST00000526977 LRRC7Q96NW7 1537 aa25.4■■□□□ 1.66
VPS28-207ENST00000526977 NGDNQ8NEJ9 315 aaKnown RBP25.39■■□□□ 1.66
VPS28-207ENST00000526977 PMFBP1Q8TBY8 1022 aa25.39■■□□□ 1.66
VPS28-207ENST00000526977 MSH6P52701 1360 aa25.39■■□□□ 1.66
VPS28-207ENST00000526977 CADPS2Q86UW7 1296 aa25.39■■□□□ 1.65
VPS28-207ENST00000526977 NLRP13Q86W25 1043 aa25.39■■□□□ 1.65
VPS28-207ENST00000526977 FYB1O15117 783 aa25.38■■□□□ 1.65
VPS28-207ENST00000526977 MORC1Q86VD1 984 aa25.37■■□□□ 1.65
VPS28-207ENST00000526977 PHF8Q9UPP1 1060 aa25.37■■□□□ 1.65
VPS28-207ENST00000526977 RGPD8O14715 1765 aaPredicted RBP25.37■■□□□ 1.65
VPS28-207ENST00000526977 SUPT16HQ9Y5B9 1047 aaKnown RBP25.37■■□□□ 1.65
VPS28-207ENST00000526977 ZBED9Q6R2W3 1325 aa25.36■■□□□ 1.65
VPS28-207ENST00000526977 AKAP12Q02952 1782 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms