RNA–Protein interactions for RNA: ENST00000526869.1

SMCO4-203, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

TSL 1 (best)

Gene SMCO4, Length 374 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-203ENST00000526869 PTCH1Q13635 1447 aa28.03■■■□□ 2.08
SMCO4-203ENST00000526869 ATAD2Q6PL18 1390 aa28.03■■■□□ 2.08
SMCO4-203ENST00000526869 NPC1L1Q9UHC9 1359 aa28.03■■■□□ 2.08
SMCO4-203ENST00000526869 XRN1Q8IZH2 1706 aaKnown RBP28.03■■■□□ 2.08
SMCO4-203ENST00000526869 PTPRUQ92729 1446 aa28.01■■■□□ 2.08
SMCO4-203ENST00000526869 PARD3Q8TEW0 1356 aa28.01■■■□□ 2.07
SMCO4-203ENST00000526869 PLEKHH1Q9ULM0 1364 aa28.01■■■□□ 2.07
SMCO4-203ENST00000526869 MINK1Q8N4C8 1332 aaPredicted RBP28.01■■■□□ 2.07
SMCO4-203ENST00000526869 SAFB2Q14151 953 aaKnown RBP eCLIP28.01■■■□□ 2.07
SMCO4-203ENST00000526869 SLC26A8Q96RN1 970 aa28.01■■■□□ 2.07
SMCO4-203ENST00000526869 ADGRB2O60241 1585 aa28.01■■■□□ 2.07
SMCO4-203ENST00000526869 ROBO2Q9HCK4 1378 aa27.99■■■□□ 2.07
SMCO4-203ENST00000526869 WAPLQ7Z5K2 1190 aa27.98■■■□□ 2.07
SMCO4-203ENST00000526869 KNSTRNQ9Y448 316 aa27.98■■■□□ 2.07
SMCO4-203ENST00000526869 USP32Q8NFA0 1604 aa27.97■■■□□ 2.07
SMCO4-203ENST00000526869 NPHP4O75161 1426 aaPredicted RBP27.95■■■□□ 2.07
SMCO4-203ENST00000526869 MYBBP1AQ9BQG0 1328 aaKnown RBP27.94■■■□□ 2.06
SMCO4-203ENST00000526869 SRPK2P78362 688 aaKnown RBP27.94■■■□□ 2.06
SMCO4-203ENST00000526869 CABP2Q9NPB3 220 aa27.94■■■□□ 2.06
SMCO4-203ENST00000526869 ANKRD36BQ8N2N9 1353 aa27.94■■■□□ 2.06
SMCO4-203ENST00000526869 AMER1Q5JTC6 1135 aaPredicted RBP27.93■■■□□ 2.06
SMCO4-203ENST00000526869 CDK19Q9BWU1 502 aa27.93■■■□□ 2.06
SMCO4-203ENST00000526869 AMOTL2Q9Y2J4 779 aa27.92■■■□□ 2.06
SMCO4-203ENST00000526869 CHD2O14647 1828 aaKnown RBP27.91■■■□□ 2.06
SMCO4-203ENST00000526869 YTHDC1Q96MU7 727 aaKnown RBP27.91■■■□□ 2.06
SMCO4-203ENST00000526869 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.9■■■□□ 2.06
SMCO4-203ENST00000526869 KDM4FA0A1W2PPD8 638 aa27.9■■■□□ 2.06
SMCO4-203ENST00000526869 WASLO00401 505 aaPredicted RBP27.9■■■□□ 2.06
SMCO4-203ENST00000526869 CENPBP07199 599 aaPredicted RBP27.9■■■□□ 2.06
SMCO4-203ENST00000526869 TMC1Q8TDI8 760 aa27.9■■■□□ 2.06
SMCO4-203ENST00000526869 SLC12A5Q9H2X9 1139 aa27.9■■■□□ 2.06
SMCO4-203ENST00000526869 BRD4O60885 1362 aaPredicted RBP27.89■■■□□ 2.06
SMCO4-203ENST00000526869 CARD14Q9BXL6 1004 aa27.88■■■□□ 2.05
SMCO4-203ENST00000526869 MRS2Q9HD23 443 aa27.87■■■□□ 2.05
SMCO4-203ENST00000526869 ATP7BP35670 1465 aa27.87■■■□□ 2.05
SMCO4-203ENST00000526869 NSD3Q9BZ95 1437 aa27.86■■■□□ 2.05
SMCO4-203ENST00000526869 NLRP13Q86W25 1043 aa27.85■■■□□ 2.05
SMCO4-203ENST00000526869 CC2D1BQ5T0F9 858 aaKnown RBP27.84■■■□□ 2.05
SMCO4-203ENST00000526869 NWD1Q149M9 1564 aa27.83■■■□□ 2.05
SMCO4-203ENST00000526869 CCDC184Q52MB2 194 aa27.83■■■□□ 2.05
SMCO4-203ENST00000526869 TERF2IPQ9NYB0 399 aa27.83■■■□□ 2.05
SMCO4-203ENST00000526869 CD163L1Q9NR16 1453 aa27.83■■■□□ 2.04
SMCO4-203ENST00000526869 NSD2O96028 1365 aa27.82■■■□□ 2.04
SMCO4-203ENST00000526869 A0A1W2PP64 1363 aa27.81■■■□□ 2.04
SMCO4-203ENST00000526869 CNGB1Q14028 1251 aaPredicted RBP27.8■■■□□ 2.04
SMCO4-203ENST00000526869 NCKAP5LQ9HCH0 1330 aa27.79■■■□□ 2.04
SMCO4-203ENST00000526869 TOPAZ1Q8N9V7 1692 aa27.78■■■□□ 2.04
SMCO4-203ENST00000526869 CGNL1Q0VF96 1302 aa27.78■■■□□ 2.04
SMCO4-203ENST00000526869 KCNA6P17658 529 aa27.78■■■□□ 2.04
SMCO4-203ENST00000526869 HDGFL2Q7Z4V5 671 aaPredicted RBP27.77■■■□□ 2.04
SMCO4-203ENST00000526869 CDC42BPGQ6DT37 1551 aa27.77■■■□□ 2.04
SMCO4-203ENST00000526869 NUDT16Q96DE0 195 aaKnown RBP27.76■■■□□ 2.03
SMCO4-203ENST00000526869 LMTK3Q96Q04 1460 aa27.76■■■□□ 2.03
SMCO4-203ENST00000526869 PPIP5K1Q6PFW1 1433 aa27.75■■■□□ 2.03
SMCO4-203ENST00000526869 CABP1Q9NZU7 370 aa27.74■■■□□ 2.03
SMCO4-203ENST00000526869 CCDC61Q9Y6R9 512 aa27.74■■■□□ 2.03
SMCO4-203ENST00000526869 CPSF1Q10570 1443 aaKnown RBP27.74■■■□□ 2.03
SMCO4-203ENST00000526869 ITSN1Q15811 1721 aa27.72■■■□□ 2.03
SMCO4-203ENST00000526869 NKTRP30414 1462 aaKnown RBP27.71■■■□□ 2.03
SMCO4-203ENST00000526869 PPP2R1AP30153 589 aa27.71■■■□□ 2.03
SMCO4-203ENST00000526869 ANKARQ7Z5J8 1434 aa27.71■■■□□ 2.03
SMCO4-203ENST00000526869 ANKRD26Q9UPS8 1709 aa27.71■■■□□ 2.03
SMCO4-203ENST00000526869 AKAP12Q02952 1782 aa27.71■■■□□ 2.03
SMCO4-203ENST00000526869 PRR36Q9H6K5 1346 aa27.7■■■□□ 2.03
SMCO4-203ENST00000526869 PNISRQ8TF01 805 aaKnown RBP27.7■■■□□ 2.02
SMCO4-203ENST00000526869 MON2Q7Z3U7 1717 aa27.7■■■□□ 2.02
SMCO4-203ENST00000526869 FMN2Q9NZ56 1722 aa27.7■■■□□ 2.02
SMCO4-203ENST00000526869 ILDR1Q86SU0 546 aaPredicted RBP27.69■■■□□ 2.02
SMCO4-203ENST00000526869 NALCNQ8IZF0 1738 aa27.69■■■□□ 2.02
SMCO4-203ENST00000526869 EDC4Q6P2E9 1401 aaKnown RBP27.67■■■□□ 2.02
SMCO4-203ENST00000526869 KIF20BQ96Q89 1820 aa27.67■■■□□ 2.02
SMCO4-203ENST00000526869 ADGRL3Q9HAR2 1447 aa27.67■■■□□ 2.02
SMCO4-203ENST00000526869 INSRP06213 1382 aa27.66■■■□□ 2.02
SMCO4-203ENST00000526869 PLEKHG3A1L390 1219 aa27.65■■■□□ 2.02
SMCO4-203ENST00000526869 FAM9BQ8IZU0 186 aa27.65■■■□□ 2.02
SMCO4-203ENST00000526869 MORC1Q86VD1 984 aa27.64■■■□□ 2.02
SMCO4-203ENST00000526869 ZNF692Q9BU19 519 aaPredicted RBP27.63■■■□□ 2.01
SMCO4-203ENST00000526869 STRCQ7RTU9 1775 aa27.6■■■□□ 2.01
SMCO4-203ENST00000526869 HSPA2P54652 639 aa27.6■■■□□ 2.01
SMCO4-203ENST00000526869 NRKQ7Z2Y5 1582 aa27.6■■■□□ 2.01
SMCO4-203ENST00000526869 FYB1O15117 783 aa27.57■■■□□ 2
SMCO4-203ENST00000526869 HNRNPUQ00839 825 aaKnown RBP eCLIP27.57■■■□□ 2
SMCO4-203ENST00000526869 NCOA3Q9Y6Q9 1424 aa27.57■■■□□ 2
SMCO4-203ENST00000526869 POLR3AO14802 1390 aaPredicted RBP27.56■■■□□ 2
SMCO4-203ENST00000526869 USP6P35125 1406 aa27.53■■■□□ 2
SMCO4-203ENST00000526869 ACEP12821 1306 aa27.53■■■□□ 2
SMCO4-203ENST00000526869 RGPD8O14715 1765 aaPredicted RBP27.53■■■□□ 2
SMCO4-203ENST00000526869 STRCP1A6NGW2 1772 aa27.51■■□□□ 1.99
SMCO4-203ENST00000526869 SCAF1Q9H7N4 1312 aaKnown RBP27.51■■□□□ 1.99
SMCO4-203ENST00000526869 PROSER2Q86WR7 435 aaPredicted RBP27.5■■□□□ 1.99
SMCO4-203ENST00000526869 GGNBP2Q9H3C7 697 aa27.5■■□□□ 1.99
SMCO4-203ENST00000526869 BLMP54132 1417 aaPredicted RBP27.5■■□□□ 1.99
SMCO4-203ENST00000526869 SSH2Q76I76 1423 aa27.5■■□□□ 1.99
SMCO4-203ENST00000526869 ZBED9Q6R2W3 1325 aa27.49■■□□□ 1.99
SMCO4-203ENST00000526869 DCCP43146 1447 aa27.48■■□□□ 1.99
SMCO4-203ENST00000526869 NUTM2FA1L443 756 aa27.47■■□□□ 1.99
SMCO4-203ENST00000526869 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.46■■□□□ 1.99
SMCO4-203ENST00000526869 TTC21BQ7Z4L5 1316 aa27.45■■□□□ 1.99
SMCO4-203ENST00000526869 TTC21AQ8NDW8 1320 aa27.45■■□□□ 1.99
SMCO4-203ENST00000526869 WDR43Q15061 677 aaKnown RBP eCLIP27.45■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms