RNA–Protein interactions for RNA: ENST00000524033.5

SPIDR-223, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 1,023 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-223	ENST00000524033	VWDE	Q8N2E2	1590 aa		10.92	□□□□□ -0.66
SPIDR-223	ENST00000524033	HDGF	P51858	240 aa	Known RBP	10.92	□□□□□ -0.66
SPIDR-223	ENST00000524033	ZRANB1	Q9UGI0	708 aa		10.92	□□□□□ -0.66
SPIDR-223	ENST00000524033	LMTK2	Q8IWU2	1503 aa		10.92	□□□□□ -0.66
SPIDR-223	ENST00000524033	TONSL	Q96HA7	1378 aa		10.91	□□□□□ -0.66
SPIDR-223	ENST00000524033	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	10.91	□□□□□ -0.66
SPIDR-223	ENST00000524033	CD44	P16070	742 aa	Known RBP	10.91	□□□□□ -0.66
SPIDR-223	ENST00000524033	ZFP91	Q96JP5	570 aa	Predicted RBP	10.91	□□□□□ -0.66
SPIDR-223	ENST00000524033	ARHGAP23	Q9P227	1491 aa		10.91	□□□□□ -0.66
SPIDR-223	ENST00000524033	SLIT1	O75093	1534 aa		10.9	□□□□□ -0.66
SPIDR-223	ENST00000524033	SOCS7	O14512	581 aa		10.9	□□□□□ -0.66
SPIDR-223	ENST00000524033	ANP32E	Q9BTT0	268 aa		10.9	□□□□□ -0.66
SPIDR-223	ENST00000524033	BCL11B	Q9C0K0	894 aa	Predicted RBP	10.9	□□□□□ -0.66
SPIDR-223	ENST00000524033	CCDC61	Q9Y6R9	512 aa		10.9	□□□□□ -0.66
SPIDR-223	ENST00000524033	NOS1	P29475	1434 aa		10.9	□□□□□ -0.66
SPIDR-223	ENST00000524033	LRRC7	Q96NW7	1537 aa		10.89	□□□□□ -0.67
SPIDR-223	ENST00000524033	KCNA6	P17658	529 aa		10.89	□□□□□ -0.67
SPIDR-223	ENST00000524033	PROSER2	Q86WR7	435 aa	Predicted RBP	10.89	□□□□□ -0.67
SPIDR-223	ENST00000524033	ROCK1	Q13464	1354 aa		10.89	□□□□□ -0.67
SPIDR-223	ENST00000524033	CROCC2	H7BZ55	1655 aa		10.89	□□□□□ -0.67
SPIDR-223	ENST00000524033	ANP32C	O43423	234 aa		10.88	□□□□□ -0.67
SPIDR-223	ENST00000524033	PCDHB13	Q9Y5F0	798 aa		10.88	□□□□□ -0.67
SPIDR-223	ENST00000524033	IQGAP1	P46940	1657 aa		10.88	□□□□□ -0.67
SPIDR-223	ENST00000524033	NUP155	O75694	1391 aa		10.88	□□□□□ -0.67
SPIDR-223	ENST00000524033	CEP152	O94986	1710 aa		10.87	□□□□□ -0.67
SPIDR-223	ENST00000524033	RBM33	Q96EV2	1170 aa	Known RBP	10.87	□□□□□ -0.67
SPIDR-223	ENST00000524033	PCDHB8	Q9UN66	801 aa		10.87	□□□□□ -0.67
SPIDR-223	ENST00000524033	EFCAB6	Q5THR3	1501 aa		10.87	□□□□□ -0.67
SPIDR-223	ENST00000524033	RPRD2	Q5VT52	1461 aa	Known RBP	10.87	□□□□□ -0.67
SPIDR-223	ENST00000524033	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	10.86	□□□□□ -0.67
SPIDR-223	ENST00000524033	UBR1	Q8IWV7	1749 aa		10.86	□□□□□ -0.67
SPIDR-223	ENST00000524033	PDAP1	Q13442	181 aa	Known RBP	10.85	□□□□□ -0.67
SPIDR-223	ENST00000524033	TMEM94	Q12767	1356 aa		10.85	□□□□□ -0.67
SPIDR-223	ENST00000524033	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.84	□□□□□ -0.67
SPIDR-223	ENST00000524033	TBX22	Q9Y458	520 aa		10.84	□□□□□ -0.67
SPIDR-223	ENST00000524033	PIK3C2B	O00750	1634 aa		10.84	□□□□□ -0.67
SPIDR-223	ENST00000524033	SYNM	O15061	1565 aa		10.83	□□□□□ -0.68
SPIDR-223	ENST00000524033	ZNF579	Q8NAF0	562 aa	Known RBP	10.83	□□□□□ -0.68
SPIDR-223	ENST00000524033	SGIP1	Q9BQI5	828 aa		10.83	□□□□□ -0.68
SPIDR-223	ENST00000524033	RIMS2	Q9UQ26	1411 aa		10.83	□□□□□ -0.68
SPIDR-223	ENST00000524033	PLEKHG1	Q9ULL1	1385 aa		10.82	□□□□□ -0.68
SPIDR-223	ENST00000524033	MAP3K13	O43283	966 aa		10.82	□□□□□ -0.68
SPIDR-223	ENST00000524033	SLAIN2	Q9P270	581 aa		10.82	□□□□□ -0.68
SPIDR-223	ENST00000524033	NEFL	P07196	543 aa		10.81	□□□□□ -0.68
SPIDR-223	ENST00000524033	PSEN1	P49768	467 aa		10.81	□□□□□ -0.68
SPIDR-223	ENST00000524033	TET3	O43151	1660 aa		10.81	□□□□□ -0.68
SPIDR-223	ENST00000524033	ZFYVE9	O95405	1425 aa		10.81	□□□□□ -0.68
SPIDR-223	ENST00000524033	ALK	Q9UM73	1620 aa		10.8	□□□□□ -0.68
SPIDR-223	ENST00000524033	CFAP65	Q6ZU64	1925 aa	Known RBP	10.8	□□□□□ -0.68
SPIDR-223	ENST00000524033	ADGRB3	O60242	1522 aa		10.8	□□□□□ -0.68
SPIDR-223	ENST00000524033	VSIG10	Q8N0Z9	540 aa		10.8	□□□□□ -0.68
SPIDR-223	ENST00000524033	PHF12	Q96QT6	1004 aa		10.8	□□□□□ -0.68
SPIDR-223	ENST00000524033	HIRIP3	Q9BW71	556 aa	Predicted RBP	10.8	□□□□□ -0.68
SPIDR-223	ENST00000524033	RYDEN	Q9NUL5	291 aa	Known RBP	10.8	□□□□□ -0.68
SPIDR-223	ENST00000524033	FAM135B	Q49AJ0	1406 aa		10.8	□□□□□ -0.68
SPIDR-223	ENST00000524033	ZNF326	Q5BKZ1	582 aa	Known RBP	10.79	□□□□□ -0.68
SPIDR-223	ENST00000524033	C14orf37	Q86TY3	774 aa		10.79	□□□□□ -0.68
SPIDR-223	ENST00000524033	KIF12	Q96FN5	646 aa		10.79	□□□□□ -0.68
SPIDR-223	ENST00000524033	WASHC2A	Q641Q2	1341 aa		10.79	□□□□□ -0.68
SPIDR-223	ENST00000524033	MSH6	P52701	1360 aa		10.78	□□□□□ -0.68
SPIDR-223	ENST00000524033	SPATA31E1	Q6ZUB1	1445 aa		10.78	□□□□□ -0.68
SPIDR-223	ENST00000524033	HSPA5	P11021	654 aa	Known RBP	10.78	□□□□□ -0.68
SPIDR-223	ENST00000524033	IFNL1	Q8IU54	200 aa		10.78	□□□□□ -0.68
SPIDR-223	ENST00000524033	TRIM52	Q96A61	297 aa		10.78	□□□□□ -0.68
SPIDR-223	ENST00000524033	RBM19	Q9Y4C8	960 aa	Known RBP	10.78	□□□□□ -0.68
SPIDR-223	ENST00000524033	KDM5A	P29375	1690 aa	Known RBP	10.78	□□□□□ -0.68
SPIDR-223	ENST00000524033	STRCP1	A6NGW2	1772 aa		10.77	□□□□□ -0.68
SPIDR-223	ENST00000524033	ERICH6B	Q5W0A0	696 aa		10.77	□□□□□ -0.69
SPIDR-223	ENST00000524033	C19orf44	Q9H6X5	657 aa		10.77	□□□□□ -0.69
SPIDR-223	ENST00000524033	CCDC7	Q96M83	1385 aa		10.77	□□□□□ -0.69
SPIDR-223	ENST00000524033	ANKRD30B	Q9BXX2	1392 aa		10.77	□□□□□ -0.69
SPIDR-223	ENST00000524033	ATF3	P18847	181 aa		10.76	□□□□□ -0.69
SPIDR-223	ENST00000524033	NKX1-1	Q15270	411 aa	Predicted RBP	10.76	□□□□□ -0.69
SPIDR-223	ENST00000524033	AMOTL2	Q9Y2J4	779 aa		10.76	□□□□□ -0.69
SPIDR-223	ENST00000524033	UNC13B	O14795	1591 aa		10.75	□□□□□ -0.69
SPIDR-223	ENST00000524033	NKTR	P30414	1462 aa	Known RBP	10.74	□□□□□ -0.69
SPIDR-223	ENST00000524033	MED1	Q15648	1581 aa	Predicted RBP	10.74	□□□□□ -0.69
SPIDR-223	ENST00000524033	TMEM131L	A2VDJ0	1609 aa		10.74	□□□□□ -0.69
SPIDR-223	ENST00000524033	HAX1	O00165	279 aa		10.74	□□□□□ -0.69
SPIDR-223	ENST00000524033	CADPS2	Q86UW7	1296 aa		10.74	□□□□□ -0.69
SPIDR-223	ENST00000524033	FANCI	Q9NVI1	1328 aa		10.74	□□□□□ -0.69
SPIDR-223	ENST00000524033	PIK3R4	Q99570	1358 aa		10.74	□□□□□ -0.69
SPIDR-223	ENST00000524033	ADAMTS13	Q76LX8	1427 aa		10.74	□□□□□ -0.69
SPIDR-223	ENST00000524033	NCOA3	Q9Y6Q9	1424 aa		10.74	□□□□□ -0.69
SPIDR-223	ENST00000524033	C19orf67	A6NJJ6	358 aa		10.72	□□□□□ -0.69
SPIDR-223	ENST00000524033	GTPBP6	O43824	516 aa	Predicted RBP	10.72	□□□□□ -0.69
SPIDR-223	ENST00000524033	GOLGA2	Q08379	1002 aa		10.72	□□□□□ -0.69
SPIDR-223	ENST00000524033	RGS17	Q9UGC6	210 aa	Predicted RBP	10.72	□□□□□ -0.69
SPIDR-223	ENST00000524033	IQGAP3	Q86VI3	1631 aa		10.72	□□□□□ -0.69
SPIDR-223	ENST00000524033		E9PCH4	1651 aa		10.71	□□□□□ -0.69
SPIDR-223	ENST00000524033	EIF4G2	P78344	907 aa	Known RBP eCLIP	10.71	□□□□□ -0.69	3e-7	■■□□□ 12.5
SPIDR-223	ENST00000524033	MPHOSPH9	Q99550	1183 aa		10.7	□□□□□ -0.7
SPIDR-223	ENST00000524033	CABP2	Q9NPB3	220 aa		10.7	□□□□□ -0.7
SPIDR-223	ENST00000524033	MET	P08581	1390 aa		10.69	□□□□□ -0.7
SPIDR-223	ENST00000524033	ZBED9	Q6R2W3	1325 aa		10.69	□□□□□ -0.7
SPIDR-223	ENST00000524033	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.69	□□□□□ -0.7
SPIDR-223	ENST00000524033	NWD1	Q149M9	1564 aa		10.69	□□□□□ -0.7
SPIDR-223	ENST00000524033	PTPRU	Q92729	1446 aa		10.68	□□□□□ -0.7
SPIDR-223	ENST00000524033	RPGRIP1L	Q68CZ1	1315 aa		10.68	□□□□□ -0.7
SPIDR-223	ENST00000524033	L3MBTL2	Q969R5	705 aa		10.68	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms