RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 PTCH1Q13635 1447 aa18.28■□□□□ 0.52
CPNE3-205ENST00000522240 FAM135BQ49AJ0 1406 aa18.28■□□□□ 0.52
CPNE3-205ENST00000522240 NWD1Q149M9 1564 aa18.27■□□□□ 0.52
CPNE3-205ENST00000522240 TESK2Q96S53 571 aa18.27■□□□□ 0.52
CPNE3-205ENST00000522240 TRAK1Q9UPV9 953 aa18.27■□□□□ 0.52
CPNE3-205ENST00000522240 CHD2O14647 1828 aaKnown RBP18.26■□□□□ 0.51
CPNE3-205ENST00000522240 PTPRUQ92729 1446 aa18.26■□□□□ 0.51
CPNE3-205ENST00000522240 SOCS7O14512 581 aa18.26■□□□□ 0.51
CPNE3-205ENST00000522240 SLC26A8Q96RN1 970 aa18.26■□□□□ 0.51
CPNE3-205ENST00000522240 CCDC7Q96M83 1385 aa18.26■□□□□ 0.51
CPNE3-205ENST00000522240 NCKAP5LQ9HCH0 1330 aa18.24■□□□□ 0.51
CPNE3-205ENST00000522240 ILDR2Q71H61 639 aa18.24■□□□□ 0.51
CPNE3-205ENST00000522240 SIRT1Q96EB6 747 aa18.24■□□□□ 0.51
CPNE3-205ENST00000522240 ATXN8OSP0DMR3 200 aa18.23■□□□□ 0.51
CPNE3-205ENST00000522240 WASHC2AQ641Q2 1341 aa18.23■□□□□ 0.51
CPNE3-205ENST00000522240 ADGRB2O60241 1585 aa18.22■□□□□ 0.51
CPNE3-205ENST00000522240 TMF1P82094 1093 aa18.22■□□□□ 0.51
CPNE3-205ENST00000522240 STK26Q9P289 416 aa18.22■□□□□ 0.51
CPNE3-205ENST00000522240 KIF7Q2M1P5 1343 aa18.22■□□□□ 0.51
CPNE3-205ENST00000522240 TULP4Q9NRJ4 1543 aa18.21■□□□□ 0.51
CPNE3-205ENST00000522240 ZNF335Q9H4Z2 1342 aaPredicted RBP18.21■□□□□ 0.51
CPNE3-205ENST00000522240 NKTRP30414 1462 aaKnown RBP18.2■□□□□ 0.5
CPNE3-205ENST00000522240 C11orf95C9JLR9 678 aaPredicted RBP18.19■□□□□ 0.5
CPNE3-205ENST00000522240 PRAM1Q96QH2 718 aa18.19■□□□□ 0.5
CPNE3-205ENST00000522240 ROBO2Q9HCK4 1378 aa18.18■□□□□ 0.5
CPNE3-205ENST00000522240 CDCA8Q53HL2 280 aa18.18■□□□□ 0.5
CPNE3-205ENST00000522240 DCAF8L1A6NGE4 600 aa18.17■□□□□ 0.5
CPNE3-205ENST00000522240 UBAP1LF5GYI3 381 aa18.17■□□□□ 0.5
CPNE3-205ENST00000522240 POGKQ9P215 609 aa18.17■□□□□ 0.5
CPNE3-205ENST00000522240 AMOTL2Q9Y2J4 779 aa18.17■□□□□ 0.5
CPNE3-205ENST00000522240 PLEKHH1Q9ULM0 1364 aa18.17■□□□□ 0.5
CPNE3-205ENST00000522240 MYOM1P52179 1685 aa18.16■□□□□ 0.5
CPNE3-205ENST00000522240 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.15■□□□□ 0.5
CPNE3-205ENST00000522240 PUS7Q96PZ0 661 aaKnown RBP18.14■□□□□ 0.49
CPNE3-205ENST00000522240 EVC2Q86UK5 1308 aa18.14■□□□□ 0.49
CPNE3-205ENST00000522240 KCNA6P17658 529 aa18.13■□□□□ 0.49
CPNE3-205ENST00000522240 WAPLQ7Z5K2 1190 aa18.12■□□□□ 0.49
CPNE3-205ENST00000522240 CDC42BPGQ6DT37 1551 aa18.11■□□□□ 0.49
CPNE3-205ENST00000522240 NALCNQ8IZF0 1738 aa18.11■□□□□ 0.49
CPNE3-205ENST00000522240 STRCP1A6NGW2 1772 aa18.1■□□□□ 0.49
CPNE3-205ENST00000522240 MINK1Q8N4C8 1332 aaPredicted RBP18.1■□□□□ 0.49
CPNE3-205ENST00000522240 SAFB2Q14151 953 aaKnown RBP eCLIP18.1■□□□□ 0.49
CPNE3-205ENST00000522240 ATAD2Q6PL18 1390 aa18.09■□□□□ 0.49
CPNE3-205ENST00000522240 NINLQ9Y2I6 1382 aa18.09■□□□□ 0.49
CPNE3-205ENST00000522240 DIEXFQ68CQ4 756 aaKnown RBP18.09■□□□□ 0.49
CPNE3-205ENST00000522240 DDX10Q13206 875 aaKnown RBP18.08■□□□□ 0.48
CPNE3-205ENST00000522240 ADGRL3Q9HAR2 1447 aa18.07■□□□□ 0.48
CPNE3-205ENST00000522240 NCOA3Q9Y6Q9 1424 aa18.06■□□□□ 0.48
CPNE3-205ENST00000522240 TOM1O60784 492 aa18.06■□□□□ 0.48
CPNE3-205ENST00000522240 POLR3GLQ9BT43 218 aa18.06■□□□□ 0.48
CPNE3-205ENST00000522240 TOPAZ1Q8N9V7 1692 aa18.06■□□□□ 0.48
CPNE3-205ENST00000522240 FMN2Q9NZ56 1722 aa18.05■□□□□ 0.48
CPNE3-205ENST00000522240 ATP7BP35670 1465 aa18.05■□□□□ 0.48
CPNE3-205ENST00000522240 ITSN1Q15811 1721 aa18.04■□□□□ 0.48
CPNE3-205ENST00000522240 WASLO00401 505 aaPredicted RBP18.04■□□□□ 0.48
CPNE3-205ENST00000522240 SRPK2P78362 688 aaKnown RBP18.02■□□□□ 0.48
CPNE3-205ENST00000522240 ANKARQ7Z5J8 1434 aa18.02■□□□□ 0.48
CPNE3-205ENST00000522240 CDK19Q9BWU1 502 aa18.02■□□□□ 0.48
CPNE3-205ENST00000522240 DCCP43146 1447 aa18.01■□□□□ 0.47
CPNE3-205ENST00000522240 USP32Q8NFA0 1604 aa18.01■□□□□ 0.47
CPNE3-205ENST00000522240 CABP2Q9NPB3 220 aa18■□□□□ 0.47
CPNE3-205ENST00000522240 XIRP1Q702N8 1843 aaKnown RBP17.99■□□□□ 0.47
CPNE3-205ENST00000522240 HSPA1LP34931 641 aa17.98■□□□□ 0.47
CPNE3-205ENST00000522240 ANKRD36BQ8N2N9 1353 aa17.98■□□□□ 0.47
CPNE3-205ENST00000522240 LRRC7Q96NW7 1537 aa17.98■□□□□ 0.47
CPNE3-205ENST00000522240 TMEM94Q12767 1356 aa17.97■□□□□ 0.47
CPNE3-205ENST00000522240 PROSER2Q86WR7 435 aaPredicted RBP17.97■□□□□ 0.47
CPNE3-205ENST00000522240 PIP4K2BP78356 416 aa17.96■□□□□ 0.47
CPNE3-205ENST00000522240 PPIP5K1Q6PFW1 1433 aa17.96■□□□□ 0.47
CPNE3-205ENST00000522240 CD163L1Q9NR16 1453 aa17.95■□□□□ 0.46
CPNE3-205ENST00000522240 AKAP12Q02952 1782 aa17.95■□□□□ 0.46
CPNE3-205ENST00000522240 PRR36Q9H6K5 1346 aa17.95■□□□□ 0.46
CPNE3-205ENST00000522240 NUDT16Q96DE0 195 aaKnown RBP17.94■□□□□ 0.46
CPNE3-205ENST00000522240 PANK3Q9H999 370 aa17.94■□□□□ 0.46
CPNE3-205ENST00000522240 MON2Q7Z3U7 1717 aa17.94■□□□□ 0.46
CPNE3-205ENST00000522240 TMC1Q8TDI8 760 aa17.93■□□□□ 0.46
CPNE3-205ENST00000522240 CCDC61Q9Y6R9 512 aa17.93■□□□□ 0.46
CPNE3-205ENST00000522240 A0A1W2PP64 1363 aa17.92■□□□□ 0.46
CPNE3-205ENST00000522240 PER1O15534 1290 aaPredicted RBP17.92■□□□□ 0.46
CPNE3-205ENST00000522240 SLC12A5Q9H2X9 1139 aa17.92■□□□□ 0.46
CPNE3-205ENST00000522240 MSH6P52701 1360 aa17.91■□□□□ 0.46
CPNE3-205ENST00000522240 NPC1L1Q9UHC9 1359 aa17.91■□□□□ 0.46
CPNE3-205ENST00000522240 CPSF1Q10570 1443 aaKnown RBP17.91■□□□□ 0.46
CPNE3-205ENST00000522240 C14orf37Q86TY3 774 aa17.91■□□□□ 0.46
CPNE3-205ENST00000522240 C19orf44Q9H6X5 657 aa17.91■□□□□ 0.46
CPNE3-205ENST00000522240 TERF2IPQ9NYB0 399 aa17.91■□□□□ 0.46
CPNE3-205ENST00000522240 RGPD8O14715 1765 aaPredicted RBP17.91■□□□□ 0.46
CPNE3-205ENST00000522240 MED1Q15648 1581 aaPredicted RBP17.91■□□□□ 0.46
CPNE3-205ENST00000522240 NRKQ7Z2Y5 1582 aa17.91■□□□□ 0.46
CPNE3-205ENST00000522240 NSD3Q9BZ95 1437 aa17.9■□□□□ 0.46
CPNE3-205ENST00000522240 KIF1AQ12756 1690 aa17.9■□□□□ 0.46
CPNE3-205ENST00000522240 KTN1Q86UP2 1357 aaKnown RBP17.9■□□□□ 0.46
CPNE3-205ENST00000522240 ANP32CO43423 234 aa17.89■□□□□ 0.45
CPNE3-205ENST00000522240 PLEKHG3A1L390 1219 aa17.88■□□□□ 0.45
CPNE3-205ENST00000522240 HDGFL2Q7Z4V5 671 aaPredicted RBP17.88■□□□□ 0.45
CPNE3-205ENST00000522240 RBM33Q96EV2 1170 aaKnown RBP17.88■□□□□ 0.45
CPNE3-205ENST00000522240 CABP1Q9NZU7 370 aa17.88■□□□□ 0.45
CPNE3-205ENST00000522240 KNSTRNQ9Y448 316 aa17.88■□□□□ 0.45
CPNE3-205ENST00000522240 POLR3AO14802 1390 aaPredicted RBP17.88■□□□□ 0.45
CPNE3-205ENST00000522240 MST1RQ04912 1400 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms