RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 KIAA1468Q9P260 1216 aa6.54□□□□□ -1.36
CPNE3-204ENST00000517862 SEPT9Q9UHD8 586 aaPredicted RBP6.54□□□□□ -1.36
CPNE3-204ENST00000517862 TTBK1Q5TCY1 1321 aaPredicted RBP6.53□□□□□ -1.36
CPNE3-204ENST00000517862 WIZO95785 1651 aa6.53□□□□□ -1.36
CPNE3-204ENST00000517862 FAM98CQ17RN3 349 aaKnown RBP6.53□□□□□ -1.36
CPNE3-204ENST00000517862 ZNF784Q8NCA9 323 aaPredicted RBP6.53□□□□□ -1.36
CPNE3-204ENST00000517862 MFRPQ9BY79 579 aa6.53□□□□□ -1.36
CPNE3-204ENST00000517862 CUX1P39880 1505 aa6.52□□□□□ -1.37
CPNE3-204ENST00000517862 LRRC7Q96NW7 1537 aa6.52□□□□□ -1.37
CPNE3-204ENST00000517862 TNFRSF10AO00220 468 aa6.52□□□□□ -1.37
CPNE3-204ENST00000517862 RAPGEF3O95398 923 aa6.52□□□□□ -1.37
CPNE3-204ENST00000517862 RXRBP28702 533 aa6.52□□□□□ -1.37
CPNE3-204ENST00000517862 SPRYD7Q5W111 196 aa6.52□□□□□ -1.37
CPNE3-204ENST00000517862 DACH1Q9UI36 760 aa6.52□□□□□ -1.37
CPNE3-204ENST00000517862 FGD5Q6ZNL6 1462 aa6.52□□□□□ -1.37
CPNE3-204ENST00000517862 NCKAP5LQ9HCH0 1330 aa6.51□□□□□ -1.37
CPNE3-204ENST00000517862 SLC16A10Q8TF71 515 aa6.51□□□□□ -1.37
CPNE3-204ENST00000517862 ZNF516Q92618 1163 aa6.51□□□□□ -1.37
CPNE3-204ENST00000517862 ADAMTS12P58397 1594 aa6.51□□□□□ -1.37
CPNE3-204ENST00000517862 FANCAO15360 1455 aa6.5□□□□□ -1.37
CPNE3-204ENST00000517862 NUTM2BA6NNL0 878 aaPredicted RBP6.5□□□□□ -1.37
CPNE3-204ENST00000517862 NUTM2EB1AL46 878 aaPredicted RBP6.5□□□□□ -1.37
CPNE3-204ENST00000517862 NUTM2DQ5VT03 806 aaPredicted RBP6.5□□□□□ -1.37
CPNE3-204ENST00000517862 ZNF772Q68DY9 489 aaPredicted RBP6.5□□□□□ -1.37
CPNE3-204ENST00000517862 NUTM2AQ8IVF1 878 aaPredicted RBP6.5□□□□□ -1.37
CPNE3-204ENST00000517862 AXIN1O15169 862 aa6.49□□□□□ -1.37
CPNE3-204ENST00000517862 LORP23490 312 aaPredicted RBP6.49□□□□□ -1.37
CPNE3-204ENST00000517862 KCNMA1Q12791 1236 aa6.49□□□□□ -1.37
CPNE3-204ENST00000517862 ZNF697Q5TEC3 545 aa6.49□□□□□ -1.37
CPNE3-204ENST00000517862 CAMSAP1Q5T5Y3 1602 aa6.49□□□□□ -1.37
CPNE3-204ENST00000517862 CPS1P31327 1500 aa6.49□□□□□ -1.37
CPNE3-204ENST00000517862 PTPRGP23470 1445 aa6.49□□□□□ -1.37
CPNE3-204ENST00000517862 CDK12Q9NYV4 1490 aaPredicted RBP6.48□□□□□ -1.37
CPNE3-204ENST00000517862 ONECUT3O60422 494 aaPredicted RBP6.48□□□□□ -1.37
CPNE3-204ENST00000517862 PRKCSHP14314 528 aaPredicted RBP6.48□□□□□ -1.37
CPNE3-204ENST00000517862 PKD2Q13563 968 aa6.48□□□□□ -1.37
CPNE3-204ENST00000517862 OXER1Q8TDS5 423 aa6.48□□□□□ -1.37
CPNE3-204ENST00000517862 TMEM151AQ8N4L1 468 aa6.47□□□□□ -1.37
CPNE3-204ENST00000517862 NKX2-3Q8TAU0 364 aa6.47□□□□□ -1.37
CPNE3-204ENST00000517862 ABCA5Q8WWZ7 1642 aa6.47□□□□□ -1.37
CPNE3-204ENST00000517862 ARHGEF40Q8TER5 1519 aa6.46□□□□□ -1.37
CPNE3-204ENST00000517862 GDF9O60383 454 aa6.46□□□□□ -1.38
CPNE3-204ENST00000517862 DSG2Q14126 1118 aa6.46□□□□□ -1.38
CPNE3-204ENST00000517862 COL9A1P20849 921 aa6.45□□□□□ -1.38
CPNE3-204ENST00000517862 GMPRP36959 345 aa6.45□□□□□ -1.38
CPNE3-204ENST00000517862 GPHNQ9NQX3 736 aaPredicted RBP6.45□□□□□ -1.38
CPNE3-204ENST00000517862 RUSC2Q8N2Y8 1516 aa6.45□□□□□ -1.38
CPNE3-204ENST00000517862 SIGLEC1Q9BZZ2 1709 aa6.45□□□□□ -1.38
CPNE3-204ENST00000517862 NHSL1Q5SYE7 1610 aa6.44□□□□□ -1.38
CPNE3-204ENST00000517862 CTC1Q2NKJ3 1217 aa6.44□□□□□ -1.38
CPNE3-204ENST00000517862 BCL11BQ9C0K0 894 aaPredicted RBP6.44□□□□□ -1.38
CPNE3-204ENST00000517862 FHAD1B1AJZ9 1412 aa6.43□□□□□ -1.38
CPNE3-204ENST00000517862 WDR7Q9Y4E6 1490 aa6.43□□□□□ -1.38
CPNE3-204ENST00000517862 TNS4Q8IZW8 715 aa6.43□□□□□ -1.38
CPNE3-204ENST00000517862 ZCCHC11Q5TAX3 1644 aaKnown RBP6.43□□□□□ -1.38
CPNE3-204ENST00000517862 ATAD2Q6PL18 1390 aa6.43□□□□□ -1.38
CPNE3-204ENST00000517862 UHRF1BP1LA0JNW5 1464 aa6.42□□□□□ -1.38
CPNE3-204ENST00000517862 GDF11O95390 407 aa6.42□□□□□ -1.38
CPNE3-204ENST00000517862 COL13A1Q5TAT6 717 aaPredicted RBP6.42□□□□□ -1.38
CPNE3-204ENST00000517862 MEX3CQ5U5Q3 659 aaKnown RBP6.42□□□□□ -1.38
CPNE3-204ENST00000517862 SHANK2Q9UPX8 1470 aa6.41□□□□□ -1.38
CPNE3-204ENST00000517862 KDM5BQ9UGL1 1544 aa6.41□□□□□ -1.38
CPNE3-204ENST00000517862 FRMPD1Q5SYB0 1578 aa6.41□□□□□ -1.38
CPNE3-204ENST00000517862 AVPP01185 164 aa6.41□□□□□ -1.38
CPNE3-204ENST00000517862 LCE3BQ5TA77 95 aa6.41□□□□□ -1.38
CPNE3-204ENST00000517862 IRF7Q92985 503 aa6.41□□□□□ -1.38
CPNE3-204ENST00000517862 EMID1Q96A84 441 aaPredicted RBP6.41□□□□□ -1.38
CPNE3-204ENST00000517862 STK24Q9Y6E0 443 aa6.41□□□□□ -1.38
CPNE3-204ENST00000517862 RGS12O14924 1447 aa6.41□□□□□ -1.38
CPNE3-204ENST00000517862 ARHGEF12Q9NZN5 1544 aa6.4□□□□□ -1.38
CPNE3-204ENST00000517862 HRCP23327 699 aa6.4□□□□□ -1.38
CPNE3-204ENST00000517862 BCANQ96GW7 911 aa6.4□□□□□ -1.38
CPNE3-204ENST00000517862 TAOK2Q9UL54 1235 aa6.4□□□□□ -1.38
CPNE3-204ENST00000517862 PHLDB1Q86UU1 1377 aa6.4□□□□□ -1.39
CPNE3-204ENST00000517862 AKNAQ7Z591 1439 aa6.4□□□□□ -1.39
CPNE3-204ENST00000517862 BTBD11A6QL63 1104 aa6.39□□□□□ -1.39
CPNE3-204ENST00000517862 RNF223E7ERA6 249 aa6.39□□□□□ -1.39
CPNE3-204ENST00000517862 GIGYF1O75420 1035 aaPredicted RBP6.39□□□□□ -1.39
CPNE3-204ENST00000517862 SNRPBP14678 240 aaKnown RBP6.39□□□□□ -1.39
CPNE3-204ENST00000517862 RNF25Q96BH1 459 aaPredicted RBP6.39□□□□□ -1.39
CPNE3-204ENST00000517862 SENP2Q9HC62 589 aa6.39□□□□□ -1.39
CPNE3-204ENST00000517862 TRIM6-TRIM34B2RNG4 842 aa6.38□□□□□ -1.39
CPNE3-204ENST00000517862 CCDC125Q86Z20 511 aa6.38□□□□□ -1.39
CPNE3-204ENST00000517862 UACAQ9BZF9 1416 aa6.38□□□□□ -1.39
CPNE3-204ENST00000517862 RNF17Q9BXT8 1623 aaKnown RBP6.38□□□□□ -1.39
CPNE3-204ENST00000517862 EP400Q96L91 3159 aa6.37□□□□□ -1.39
CPNE3-204ENST00000517862 SUPT6HQ7KZ85 1726 aaKnown RBP6.37□□□□□ -1.39
CPNE3-204ENST00000517862 C3P01024 1663 aa6.37□□□□□ -1.39
CPNE3-204ENST00000517862 TRAPPC8Q9Y2L5 1435 aa6.37□□□□□ -1.39
CPNE3-204ENST00000517862 EVI5O60447 810 aa6.37□□□□□ -1.39
CPNE3-204ENST00000517862 GSK3AP49840 483 aa6.37□□□□□ -1.39
CPNE3-204ENST00000517862 SMCPP49901 116 aaPredicted RBP6.37□□□□□ -1.39
CPNE3-204ENST00000517862 TRIM47Q96LD4 638 aa6.37□□□□□ -1.39
CPNE3-204ENST00000517862 IGHA1P01876 353 aa6.36□□□□□ -1.39
CPNE3-204ENST00000517862 LMOD2Q6P5Q4 547 aa6.36□□□□□ -1.39
CPNE3-204ENST00000517862 VSIG10Q8N0Z9 540 aa6.36□□□□□ -1.39
CPNE3-204ENST00000517862 ABCA10Q8WWZ4 1543 aa6.35□□□□□ -1.39
CPNE3-204ENST00000517862 TNIKQ9UKE5 1360 aa6.35□□□□□ -1.39
CPNE3-204ENST00000517862 ECM2O94769 699 aaPredicted RBP6.35□□□□□ -1.39
CPNE3-204ENST00000517862 RASSF7Q02833 373 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms