RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 FMNL2Q96PY5 1086 aa3.25□□□□□ -1.89
RNU6-539P-201ENST00000516665 PNMA3Q9UL41 463 aa3.25□□□□□ -1.89
RNU6-539P-201ENST00000516665 PAX4O43316 350 aa3.24□□□□□ -1.89
RNU6-539P-201ENST00000516665 HDGFP51858 240 aaKnown RBP3.24□□□□□ -1.89
RNU6-539P-201ENST00000516665 SWT1Q5T5J6 900 aaKnown RBP3.24□□□□□ -1.89
RNU6-539P-201ENST00000516665 TATDN2Q93075 761 aa3.24□□□□□ -1.89
RNU6-539P-201ENST00000516665 RBM33Q96EV2 1170 aaKnown RBP3.24□□□□□ -1.89
RNU6-539P-201ENST00000516665 STK24Q9Y6E0 443 aa3.24□□□□□ -1.89
RNU6-539P-201ENST00000516665 SLF2Q8IX21 1173 aa3.23□□□□□ -1.89
RNU6-539P-201ENST00000516665 MAP3K10Q02779 954 aa3.22□□□□□ -1.89
RNU6-539P-201ENST00000516665 BEND7Q8N7W2 519 aaPredicted RBP3.22□□□□□ -1.89
RNU6-539P-201ENST00000516665 PURBQ96QR8 312 aaKnown RBP3.22□□□□□ -1.89
RNU6-539P-201ENST00000516665 PRR14Q9BWN1 585 aa3.22□□□□□ -1.89
RNU6-539P-201ENST00000516665 JAG1P78504 1218 aa3.21□□□□□ -1.9
RNU6-539P-201ENST00000516665 NBPF26B4DH59 902 aa3.2□□□□□ -1.9
RNU6-539P-201ENST00000516665 ALDH1A1P00352 501 aa3.2□□□□□ -1.9
RNU6-539P-201ENST00000516665 CELA2BP08218 269 aaPredicted RBP3.2□□□□□ -1.9
RNU6-539P-201ENST00000516665 PPP1R15BQ5SWA1 713 aa3.2□□□□□ -1.9
RNU6-539P-201ENST00000516665 PODNQ7Z5L7 613 aa3.2□□□□□ -1.9
RNU6-539P-201ENST00000516665 TRIM41Q8WV44 630 aa3.2□□□□□ -1.9
RNU6-539P-201ENST00000516665 CDCA7LQ96GN5 454 aa3.2□□□□□ -1.9
RNU6-539P-201ENST00000516665 ADAMTS2O95450 1211 aa3.19□□□□□ -1.9
RNU6-539P-201ENST00000516665 SPOCK2Q92563 424 aa3.19□□□□□ -1.9
RNU6-539P-201ENST00000516665 MAN1A2O60476 641 aa3.18□□□□□ -1.9
RNU6-539P-201ENST00000516665 VASPP50552 380 aaPredicted RBP3.18□□□□□ -1.9
RNU6-539P-201ENST00000516665 MAP3K9P80192 1104 aa3.18□□□□□ -1.9
RNU6-539P-201ENST00000516665 DOC2BQ14184 412 aa3.18□□□□□ -1.9
RNU6-539P-201ENST00000516665 TSR1Q2NL82 804 aaKnown RBP3.18□□□□□ -1.9
RNU6-539P-201ENST00000516665 MRPL14Q6P1L8 145 aaKnown RBP3.18□□□□□ -1.9
RNU6-539P-201ENST00000516665 NUDT18Q6ZVK8 323 aa3.18□□□□□ -1.9
RNU6-539P-201ENST00000516665 KRTAP9-7A8MTY7 169 aa3.16□□□□□ -1.9
RNU6-539P-201ENST00000516665 ZBTB24O43167 697 aaPredicted RBP3.16□□□□□ -1.9
RNU6-539P-201ENST00000516665 TRIM32Q13049 653 aa3.16□□□□□ -1.9
RNU6-539P-201ENST00000516665 EPAS1Q99814 870 aa3.16□□□□□ -1.9
RNU6-539P-201ENST00000516665 REPIN1Q9BWE0 567 aaKnown RBP3.16□□□□□ -1.9
RNU6-539P-201ENST00000516665 ACTN4O43707 911 aaKnown RBP3.15□□□□□ -1.91
RNU6-539P-201ENST00000516665 COL8A1P27658 744 aa3.15□□□□□ -1.91
RNU6-539P-201ENST00000516665 PRSS12P56730 875 aa3.15□□□□□ -1.91
RNU6-539P-201ENST00000516665 SCARF1Q14162 830 aa3.15□□□□□ -1.91
RNU6-539P-201ENST00000516665 SPSB2Q99619 263 aa3.15□□□□□ -1.91
RNU6-539P-201ENST00000516665 ENAMQ9NRM1 1142 aa3.15□□□□□ -1.91
RNU6-539P-201ENST00000516665 COL17A1Q9UMD9 1497 aaPredicted RBP3.15□□□□□ -1.91
RNU6-539P-201ENST00000516665 C1QTNF9BB2RNN3 333 aa3.14□□□□□ -1.91
RNU6-539P-201ENST00000516665 NR1I2O75469 434 aa3.14□□□□□ -1.91
RNU6-539P-201ENST00000516665 LRP8Q14114 963 aa3.14□□□□□ -1.91
RNU6-539P-201ENST00000516665 CSRNP3Q8WYN3 585 aa3.14□□□□□ -1.91
RNU6-539P-201ENST00000516665 NANOS1Q8WY41 292 aaKnown RBP3.13□□□□□ -1.91
RNU6-539P-201ENST00000516665 HYAL3O43820 417 aaPredicted RBP3.12□□□□□ -1.91
RNU6-539P-201ENST00000516665 RC3H1Q5TC82 1133 aaKnown RBP3.12□□□□□ -1.91
RNU6-539P-201ENST00000516665 CD163Q86VB7 1156 aa3.12□□□□□ -1.91
RNU6-539P-201ENST00000516665 NEDD1Q8NHV4 660 aa3.12□□□□□ -1.91
RNU6-539P-201ENST00000516665 PRDM9Q9NQV7 894 aa3.12□□□□□ -1.91
RNU6-539P-201ENST00000516665 SH3RF1Q7Z6J0 888 aa3.11□□□□□ -1.91
RNU6-539P-201ENST00000516665 SCUBE3Q8IX30 993 aa3.11□□□□□ -1.91
RNU6-539P-201ENST00000516665 CRISPLD2Q9H0B8 497 aa3.11□□□□□ -1.91
RNU6-539P-201ENST00000516665 STK25O00506 426 aa3.1□□□□□ -1.91
RNU6-539P-201ENST00000516665 CHRNA4P43681 627 aa3.1□□□□□ -1.91
RNU6-539P-201ENST00000516665 SKOR1P84550 965 aa3.1□□□□□ -1.91
RNU6-539P-201ENST00000516665 RSPO4Q2I0M5 234 aaPredicted RBP3.1□□□□□ -1.91
RNU6-539P-201ENST00000516665 EMILIN3Q9NT22 766 aa3.1□□□□□ -1.91
RNU6-539P-201ENST00000516665 WASF2Q9Y6W5 498 aa3.1□□□□□ -1.91
RNU6-539P-201ENST00000516665 MAP3K7O43318 606 aa3.09□□□□□ -1.91
RNU6-539P-201ENST00000516665 SLC4A3P48751 1232 aa3.09□□□□□ -1.91
RNU6-539P-201ENST00000516665 SNRPNP63162 240 aaKnown RBP3.09□□□□□ -1.91
RNU6-539P-201ENST00000516665 SRSF11Q05519 484 aaKnown RBP3.09□□□□□ -1.91
RNU6-539P-201ENST00000516665 DNMT3LQ9UJW3 386 aa3.09□□□□□ -1.91
RNU6-539P-201ENST00000516665 FBXO3Q9UK99 471 aa3.09□□□□□ -1.91
RNU6-539P-201ENST00000516665 CFHP08603 1231 aa3.08□□□□□ -1.92
RNU6-539P-201ENST00000516665 EN1Q05925 392 aaPredicted RBP3.08□□□□□ -1.92
RNU6-539P-201ENST00000516665 KMT5BQ4FZB7 885 aa3.08□□□□□ -1.92
RNU6-539P-201ENST00000516665 C6orf118Q5T5N4 469 aa3.08□□□□□ -1.92
RNU6-539P-201ENST00000516665 VWA5B2Q8N398 1253 aa3.08□□□□□ -1.92
RNU6-539P-201ENST00000516665 KRTAP9-3Q9BYQ3 159 aa3.08□□□□□ -1.92
RNU6-539P-201ENST00000516665 RNF114Q9Y508 228 aa3.08□□□□□ -1.92
RNU6-539P-201ENST00000516665 CDC14CA4D256 554 aa3.07□□□□□ -1.92
RNU6-539P-201ENST00000516665 PUS10Q3MIT2 529 aaKnown RBP3.07□□□□□ -1.92
RNU6-539P-201ENST00000516665 FAM160A2Q8N612 972 aaPredicted RBP3.07□□□□□ -1.92
RNU6-539P-201ENST00000516665 PTSQ03393 145 aa3.06□□□□□ -1.92
RNU6-539P-201ENST00000516665 ALYREFQ86V81 257 aaKnown RBP3.06□□□□□ -1.92
RNU6-539P-201ENST00000516665 DDX12PQ92771 950 aa3.06□□□□□ -1.92
RNU6-539P-201ENST00000516665 SIAH2O43255 324 aa3.05□□□□□ -1.92
RNU6-539P-201ENST00000516665 GRIN2CQ14957 1233 aa3.05□□□□□ -1.92
RNU6-539P-201ENST00000516665 PRSS36Q5K4E3 855 aa3.05□□□□□ -1.92
RNU6-539P-201ENST00000516665 NKAPLQ5M9Q1 402 aa3.05□□□□□ -1.92
RNU6-539P-201ENST00000516665 IFNLR1Q8IU57 520 aaPredicted RBP3.05□□□□□ -1.92
RNU6-539P-201ENST00000516665 DYRK3O43781 588 aa3.04□□□□□ -1.92
RNU6-539P-201ENST00000516665 GAS6Q14393 721 aa3.04□□□□□ -1.92
RNU6-539P-201ENST00000516665 CCDC155Q8N6L0 562 aa3.04□□□□□ -1.92
RNU6-539P-201ENST00000516665 NCKAP5LQ9HCH0 1330 aa3.03□□□□□ -1.92
RNU6-539P-201ENST00000516665 BCRP11274 1271 aa3.03□□□□□ -1.92
RNU6-539P-201ENST00000516665 TIMP2P16035 220 aa3.03□□□□□ -1.92
RNU6-539P-201ENST00000516665 SV2AQ7L0J3 742 aa3.03□□□□□ -1.92
RNU6-539P-201ENST00000516665 SUV39H2Q9H5I1 410 aa3.03□□□□□ -1.92
RNU6-539P-201ENST00000516665 NBR1Q14596 966 aa3.02□□□□□ -1.93
RNU6-539P-201ENST00000516665 THAP11Q96EK4 314 aa3.02□□□□□ -1.93
RNU6-539P-201ENST00000516665 SOS2Q07890 1332 aaPredicted RBP3.01□□□□□ -1.93
RNU6-539P-201ENST00000516665 ITGA6P23229 1130 aa3.01□□□□□ -1.93
RNU6-539P-201ENST00000516665 WNT7BP56706 349 aa3.01□□□□□ -1.93
RNU6-539P-201ENST00000516665 WDR4P57081 412 aaKnown RBP3□□□□□ -1.93
RNU6-539P-201ENST00000516665 ACDQ96AP0 544 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms