RNA–Protein interactions for RNA: ENST00000515753.1

HERC4-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 589 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-215ENST00000515753 KDM4AO75164 1064 aa8.34□□□□□ -1.07
HERC4-215ENST00000515753 LMOD2Q6P5Q4 547 aa8.34□□□□□ -1.07
HERC4-215ENST00000515753 CYP4X1Q8N118 509 aa8.34□□□□□ -1.07
HERC4-215ENST00000515753 TOR4AQ9NXH8 423 aa8.34□□□□□ -1.07
HERC4-215ENST00000515753 Q3C1V9 767 aa8.33□□□□□ -1.08
HERC4-215ENST00000515753 TULP1O00294 542 aaPredicted RBP8.32□□□□□ -1.08
HERC4-215ENST00000515753 GUCA2AQ02747 115 aa8.32□□□□□ -1.08
HERC4-215ENST00000515753 CCDC102AQ96A19 550 aa8.32□□□□□ -1.08
HERC4-215ENST00000515753 TTC24A2A3L6 582 aaPredicted RBP8.31□□□□□ -1.08
HERC4-215ENST00000515753 USB1Q9BQ65 265 aaKnown RBP8.31□□□□□ -1.08
HERC4-215ENST00000515753 MINK1Q8N4C8 1332 aaPredicted RBP8.3□□□□□ -1.08
HERC4-215ENST00000515753 MMP16P51512 607 aa8.3□□□□□ -1.08
HERC4-215ENST00000515753 CCDC24Q8N4L8 307 aa8.3□□□□□ -1.08
HERC4-215ENST00000515753 TRIM32Q13049 653 aa8.29□□□□□ -1.08
HERC4-215ENST00000515753 SYMPKQ92797 1274 aaKnown RBP8.29□□□□□ -1.08
HERC4-215ENST00000515753 AXIN1O15169 862 aa8.28□□□□□ -1.08
HERC4-215ENST00000515753 HOXA2O43364 376 aa8.28□□□□□ -1.08
HERC4-215ENST00000515753 AVPP01185 164 aa8.28□□□□□ -1.08
HERC4-215ENST00000515753 WNT7AO00755 349 aa8.27□□□□□ -1.09
HERC4-215ENST00000515753 DXOO77932 396 aaKnown RBP8.27□□□□□ -1.09
HERC4-215ENST00000515753 CRIPAKQ8N1N5 446 aa8.27□□□□□ -1.09
HERC4-215ENST00000515753 MRGPRX2Q96LB1 330 aa8.27□□□□□ -1.09
HERC4-215ENST00000515753 GMPR2Q9P2T1 348 aaKnown RBP8.27□□□□□ -1.09
HERC4-215ENST00000515753 USP46P62068 366 aa8.26□□□□□ -1.09
HERC4-215ENST00000515753 LCE2AQ5TA79 106 aaPredicted RBP8.26□□□□□ -1.09
HERC4-215ENST00000515753 GPCPD1Q9NPB8 672 aa8.26□□□□□ -1.09
HERC4-215ENST00000515753 FAM217BQ9NTX9 383 aaPredicted RBP8.26□□□□□ -1.09
HERC4-215ENST00000515753 J3QL48 77 aa8.25□□□□□ -1.09
HERC4-215ENST00000515753 SMPD1P17405 629 aa8.25□□□□□ -1.09
HERC4-215ENST00000515753 SNIP1Q8TAD8 396 aaKnown RBP8.25□□□□□ -1.09
HERC4-215ENST00000515753 REPIN1Q9BWE0 567 aaKnown RBP8.25□□□□□ -1.09
HERC4-215ENST00000515753 CLCN1P35523 988 aa8.24□□□□□ -1.09
HERC4-215ENST00000515753 KRI1Q8N9T8 703 aaKnown RBP8.24□□□□□ -1.09
HERC4-215ENST00000515753 C11orf95C9JLR9 678 aaPredicted RBP8.23□□□□□ -1.09
HERC4-215ENST00000515753 SKOR1P84550 965 aa8.23□□□□□ -1.09
HERC4-215ENST00000515753 CTC1Q2NKJ3 1217 aa8.23□□□□□ -1.09
HERC4-215ENST00000515753 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.23□□□□□ -1.09
HERC4-215ENST00000515753 NUTM1Q86Y26 1132 aa8.23□□□□□ -1.09
HERC4-215ENST00000515753 SMCPP49901 116 aaPredicted RBP8.21□□□□□ -1.1
HERC4-215ENST00000515753 RC3H1Q5TC82 1133 aaKnown RBP8.21□□□□□ -1.1
HERC4-215ENST00000515753 TREML4Q6UXN2 200 aa8.21□□□□□ -1.1
HERC4-215ENST00000515753 JUNDP17535 347 aa8.2□□□□□ -1.1
HERC4-215ENST00000515753 HPS1Q92902 700 aa8.2□□□□□ -1.1
HERC4-215ENST00000515753 PCDHGC3Q9UN70 934 aa8.2□□□□□ -1.1
HERC4-215ENST00000515753 FDX1P10109 184 aa8.19□□□□□ -1.1
HERC4-215ENST00000515753 SSTR3P32745 418 aaPredicted RBP8.19□□□□□ -1.1
HERC4-215ENST00000515753 PTCRAQ6ISU1 281 aaPredicted RBP8.19□□□□□ -1.1
HERC4-215ENST00000515753 C6orf229H3BNL8 230 aa8.18□□□□□ -1.1
HERC4-215ENST00000515753 NDUFV2P19404 249 aa8.18□□□□□ -1.1
HERC4-215ENST00000515753 RETREG3Q86VR2 466 aa8.18□□□□□ -1.1
HERC4-215ENST00000515753 NUDT12Q9BQG2 462 aa8.18□□□□□ -1.1
HERC4-215ENST00000515753 ATP13A2Q9NQ11 1180 aa8.18□□□□□ -1.1
HERC4-215ENST00000515753 SPIRE2Q8WWL2 714 aa8.17□□□□□ -1.1
HERC4-215ENST00000515753 ALDH1A1P00352 501 aa8.16□□□□□ -1.1
HERC4-215ENST00000515753 SNRPBP14678 240 aaKnown RBP8.16□□□□□ -1.1
HERC4-215ENST00000515753 WNT7BP56706 349 aa8.16□□□□□ -1.1
HERC4-215ENST00000515753 TTLL12Q14166 644 aaPredicted RBP8.16□□□□□ -1.1
HERC4-215ENST00000515753 MOXD2PA6NHM9 499 aa8.15□□□□□ -1.1
HERC4-215ENST00000515753 WFS1O76024 890 aa8.14□□□□□ -1.11
HERC4-215ENST00000515753 MS4A1P11836 297 aa8.13□□□□□ -1.11
HERC4-215ENST00000515753 BARGINQ6ZT62 677 aa8.13□□□□□ -1.11
HERC4-215ENST00000515753 EHBP1Q8NDI1 1231 aa8.13□□□□□ -1.11
HERC4-215ENST00000515753 ZMYND10O75800 440 aa8.12□□□□□ -1.11
HERC4-215ENST00000515753 NFX1Q12986 1120 aaKnown RBP8.12□□□□□ -1.11
HERC4-215ENST00000515753 ZC3H15Q8WU90 426 aaKnown RBP8.12□□□□□ -1.11
HERC4-215ENST00000515753 SIAH2O43255 324 aa8.11□□□□□ -1.11
HERC4-215ENST00000515753 CCNYL3P0C7X3 344 aa8.11□□□□□ -1.11
HERC4-215ENST00000515753 SH3BP2P78314 561 aa8.11□□□□□ -1.11
HERC4-215ENST00000515753 LINC01559Q495D7 138 aa8.11□□□□□ -1.11
HERC4-215ENST00000515753 GIGYF2Q6Y7W6 1299 aaKnown RBP8.11□□□□□ -1.11
HERC4-215ENST00000515753 PRR7Q8TB68 274 aa8.11□□□□□ -1.11
HERC4-215ENST00000515753 TRIM47Q96LD4 638 aa8.11□□□□□ -1.11
HERC4-215ENST00000515753 BEGAINQ9BUH8 593 aa8.1□□□□□ -1.11
HERC4-215ENST00000515753 AMHR2Q16671 573 aa8.09□□□□□ -1.11
HERC4-215ENST00000515753 BAP1Q92560 729 aa8.09□□□□□ -1.11
HERC4-215ENST00000515753 UNC93B1Q9H1C4 597 aa8.09□□□□□ -1.11
HERC4-215ENST00000515753 SENP2Q9HC62 589 aa8.09□□□□□ -1.11
HERC4-215ENST00000515753 WASF2Q9Y6W5 498 aa8.09□□□□□ -1.11
HERC4-215ENST00000515753 BMP1P13497 986 aa8.08□□□□□ -1.12
HERC4-215ENST00000515753 MTMR2Q13614 643 aa8.08□□□□□ -1.12
HERC4-215ENST00000515753 PTPRNQ16849 979 aa8.08□□□□□ -1.12
HERC4-215ENST00000515753 LCE2CQ5TA81 110 aa8.08□□□□□ -1.12
HERC4-215ENST00000515753 EVA1BQ9NVM1 165 aa8.08□□□□□ -1.12
HERC4-215ENST00000515753 TLL2Q9Y6L7 1015 aa8.07□□□□□ -1.12
HERC4-215ENST00000515753 TERTO14746 1132 aaKnown RBP8.06□□□□□ -1.12
HERC4-215ENST00000515753 CAPN5O15484 640 aaPredicted RBP8.06□□□□□ -1.12
HERC4-215ENST00000515753 KCNH2Q12809 1159 aa8.06□□□□□ -1.12
HERC4-215ENST00000515753 TBC1D2Q9BYX2 928 aa8.06□□□□□ -1.12
HERC4-215ENST00000515753 PCDHB15Q9Y5E8 787 aa8.06□□□□□ -1.12
HERC4-215ENST00000515753 TRIM46Q7Z4K8 759 aa8.05□□□□□ -1.12
HERC4-215ENST00000515753 PARP9Q8IXQ6 854 aa8.05□□□□□ -1.12
HERC4-215ENST00000515753 KIFC2Q96AC6 838 aa8.05□□□□□ -1.12
HERC4-215ENST00000515753 CTHP32929 405 aa8.04□□□□□ -1.12
HERC4-215ENST00000515753 RSBN1LQ6PCB5 846 aaPredicted RBP8.03□□□□□ -1.12
HERC4-215ENST00000515753 ZNF511Q8NB15 262 aa8.03□□□□□ -1.12
HERC4-215ENST00000515753 BCANQ96GW7 911 aa8.03□□□□□ -1.12
HERC4-215ENST00000515753 SPDYE5A6NIY4 337 aa8.02□□□□□ -1.13
HERC4-215ENST00000515753 CFAP99D6REC4 459 aa8.02□□□□□ -1.13
HERC4-215ENST00000515753 TRIM66O15016 1216 aa8.02□□□□□ -1.13
HERC4-215ENST00000515753 CSPP1Q1MSJ5 1256 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms