RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 POGKQ9P215 609 aa18.16■□□□□ 0.5
LIMCH1-220ENST00000514190 DLC1Q96QB1 1528 aa18.15■□□□□ 0.5
LIMCH1-220ENST00000514190 SBNO2Q9Y2G9 1366 aa18.15■□□□□ 0.5
LIMCH1-220ENST00000514190 TMF1P82094 1093 aa18.14■□□□□ 0.49
LIMCH1-220ENST00000514190 WAPLQ7Z5K2 1190 aa18.14■□□□□ 0.49
LIMCH1-220ENST00000514190 FAM135BQ49AJ0 1406 aa18.14■□□□□ 0.49
LIMCH1-220ENST00000514190 WASHC2AQ641Q2 1341 aa18.13■□□□□ 0.49
LIMCH1-220ENST00000514190 CCDC7Q96M83 1385 aa18.12■□□□□ 0.49
LIMCH1-220ENST00000514190 ROBO2Q9HCK4 1378 aa18.12■□□□□ 0.49
LIMCH1-220ENST00000514190 HSPA1LP34931 641 aa18.11■□□□□ 0.49
LIMCH1-220ENST00000514190 SAFB2Q14151 953 aaKnown RBP eCLIP18.11■□□□□ 0.49
LIMCH1-220ENST00000514190 RBM33Q96EV2 1170 aaKnown RBP18.11■□□□□ 0.49
LIMCH1-220ENST00000514190 KIF7Q2M1P5 1343 aa18.11■□□□□ 0.49
LIMCH1-220ENST00000514190 ARHGEF28Q8N1W1 1705 aaKnown RBP18.1■□□□□ 0.49
LIMCH1-220ENST00000514190 PLEKHH1Q9ULM0 1364 aa18.1■□□□□ 0.49
LIMCH1-220ENST00000514190 CDCA8Q53HL2 280 aa18.1■□□□□ 0.49
LIMCH1-220ENST00000514190 DISP3Q9P2K9 1392 aa18.09■□□□□ 0.49
LIMCH1-220ENST00000514190 PTCH1Q13635 1447 aa18.08■□□□□ 0.49
LIMCH1-220ENST00000514190 MSH6P52701 1360 aa18.08■□□□□ 0.49
LIMCH1-220ENST00000514190 KNDC1Q76NI1 1749 aa18.08■□□□□ 0.48
LIMCH1-220ENST00000514190 NCOA3Q9Y6Q9 1424 aa18.07■□□□□ 0.48
LIMCH1-220ENST00000514190 XRN1Q8IZH2 1706 aaKnown RBP18.07■□□□□ 0.48
LIMCH1-220ENST00000514190 MINK1Q8N4C8 1332 aaPredicted RBP18.07■□□□□ 0.48
LIMCH1-220ENST00000514190 EVC2Q86UK5 1308 aa18.06■□□□□ 0.48
LIMCH1-220ENST00000514190 PUS7Q96PZ0 661 aaKnown RBP18.06■□□□□ 0.48
LIMCH1-220ENST00000514190 DDX10Q13206 875 aaKnown RBP18.05■□□□□ 0.48
LIMCH1-220ENST00000514190 POLR3GLQ9BT43 218 aa18.04■□□□□ 0.48
LIMCH1-220ENST00000514190 QRICH2Q9H0J4 1663 aa18.03■□□□□ 0.48
LIMCH1-220ENST00000514190 C14orf37Q86TY3 774 aa18.02■□□□□ 0.48
LIMCH1-220ENST00000514190 CDK19Q9BWU1 502 aa18.02■□□□□ 0.48
LIMCH1-220ENST00000514190 ROBO1Q9Y6N7 1651 aa18.02■□□□□ 0.47
LIMCH1-220ENST00000514190 WASLO00401 505 aaPredicted RBP18.01■□□□□ 0.47
LIMCH1-220ENST00000514190 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.01■□□□□ 0.47
LIMCH1-220ENST00000514190 TULP4Q9NRJ4 1543 aa17.99■□□□□ 0.47
LIMCH1-220ENST00000514190 SRPK2P78362 688 aaKnown RBP17.99■□□□□ 0.47
LIMCH1-220ENST00000514190 DIEXFQ68CQ4 756 aaKnown RBP17.99■□□□□ 0.47
LIMCH1-220ENST00000514190 C19orf44Q9H6X5 657 aa17.99■□□□□ 0.47
LIMCH1-220ENST00000514190 CABP2Q9NPB3 220 aa17.99■□□□□ 0.47
LIMCH1-220ENST00000514190 SLAIN2Q9P270 581 aa17.98■□□□□ 0.47
LIMCH1-220ENST00000514190 MED1Q15648 1581 aaPredicted RBP17.96■□□□□ 0.47
LIMCH1-220ENST00000514190 CADPS2Q86UW7 1296 aa17.96■□□□□ 0.47
LIMCH1-220ENST00000514190 DCCP43146 1447 aa17.96■□□□□ 0.47
LIMCH1-220ENST00000514190 ATF3P18847 181 aa17.95■□□□□ 0.46
LIMCH1-220ENST00000514190 ATAD2Q6PL18 1390 aa17.94■□□□□ 0.46
LIMCH1-220ENST00000514190 ADGRB2O60241 1585 aa17.93■□□□□ 0.46
LIMCH1-220ENST00000514190 ADGRL3Q9HAR2 1447 aa17.93■□□□□ 0.46
LIMCH1-220ENST00000514190 NUDT16Q96DE0 195 aaKnown RBP17.93■□□□□ 0.46
LIMCH1-220ENST00000514190 SLC12A5Q9H2X9 1139 aa17.93■□□□□ 0.46
LIMCH1-220ENST00000514190 NALCNQ8IZF0 1738 aa17.92■□□□□ 0.46
LIMCH1-220ENST00000514190 TMC1Q8TDI8 760 aa17.92■□□□□ 0.46
LIMCH1-220ENST00000514190 PANK3Q9H999 370 aa17.92■□□□□ 0.46
LIMCH1-220ENST00000514190 CCDC61Q9Y6R9 512 aa17.91■□□□□ 0.46
LIMCH1-220ENST00000514190 PHLPP1O60346 1717 aa17.91■□□□□ 0.46
LIMCH1-220ENST00000514190 NINLQ9Y2I6 1382 aa17.91■□□□□ 0.46
LIMCH1-220ENST00000514190 PRR36Q9H6K5 1346 aa17.9■□□□□ 0.46
LIMCH1-220ENST00000514190 CABP1Q9NZU7 370 aa17.89■□□□□ 0.45
LIMCH1-220ENST00000514190 MST1RQ04912 1400 aa17.88■□□□□ 0.45
LIMCH1-220ENST00000514190 PER1O15534 1290 aaPredicted RBP17.87■□□□□ 0.45
LIMCH1-220ENST00000514190 COL16A1Q07092 1604 aaPredicted RBP17.87■□□□□ 0.45
LIMCH1-220ENST00000514190 AHDC1Q5TGY3 1603 aaPredicted RBP17.87■□□□□ 0.45
LIMCH1-220ENST00000514190 NUTM2FA1L443 756 aa17.86■□□□□ 0.45
LIMCH1-220ENST00000514190 ILDR2Q71H61 639 aa17.86■□□□□ 0.45
LIMCH1-220ENST00000514190 TERF2IPQ9NYB0 399 aa17.86■□□□□ 0.45
LIMCH1-220ENST00000514190 ANKARQ7Z5J8 1434 aa17.86■□□□□ 0.45
LIMCH1-220ENST00000514190 CDC42BPGQ6DT37 1551 aa17.86■□□□□ 0.45
LIMCH1-220ENST00000514190 PLEKHG3A1L390 1219 aa17.85■□□□□ 0.45
LIMCH1-220ENST00000514190 ATP7BP35670 1465 aa17.85■□□□□ 0.45
LIMCH1-220ENST00000514190 BRINP3Q76B58 766 aa17.85■□□□□ 0.45
LIMCH1-220ENST00000514190 CARD14Q9BXL6 1004 aa17.85■□□□□ 0.45
LIMCH1-220ENST00000514190 ANKRD36BQ8N2N9 1353 aa17.84■□□□□ 0.45
LIMCH1-220ENST00000514190 PPIP5K1Q6PFW1 1433 aa17.83■□□□□ 0.45
LIMCH1-220ENST00000514190 MYOM1P52179 1685 aa17.83■□□□□ 0.44
LIMCH1-220ENST00000514190 JCADQ9P266 1359 aa17.82■□□□□ 0.44
LIMCH1-220ENST00000514190 HDGFL2Q7Z4V5 671 aaPredicted RBP17.82■□□□□ 0.44
LIMCH1-220ENST00000514190 PHF23Q9BUL5 403 aaPredicted RBP17.82■□□□□ 0.44
LIMCH1-220ENST00000514190 KNSTRNQ9Y448 316 aa17.82■□□□□ 0.44
LIMCH1-220ENST00000514190 ZNF692Q9BU19 519 aaPredicted RBP17.81■□□□□ 0.44
LIMCH1-220ENST00000514190 NHSL1Q5SYE7 1610 aa17.8■□□□□ 0.44
LIMCH1-220ENST00000514190 FMN2Q9NZ56 1722 aa17.8■□□□□ 0.44
LIMCH1-220ENST00000514190 C1orf167Q5SNV9 1468 aa17.8■□□□□ 0.44
LIMCH1-220ENST00000514190 CD163L1Q9NR16 1453 aa17.8■□□□□ 0.44
LIMCH1-220ENST00000514190 A0A1W2PP64 1363 aa17.79■□□□□ 0.44
LIMCH1-220ENST00000514190 ANP32CO43423 234 aa17.79■□□□□ 0.44
LIMCH1-220ENST00000514190 CPSF1Q10570 1443 aaKnown RBP17.79■□□□□ 0.44
LIMCH1-220ENST00000514190 USP32Q8NFA0 1604 aa17.79■□□□□ 0.44
LIMCH1-220ENST00000514190 ACEP12821 1306 aa17.78■□□□□ 0.44
LIMCH1-220ENST00000514190 AMER1Q5JTC6 1135 aaPredicted RBP17.78■□□□□ 0.44
LIMCH1-220ENST00000514190 PHF8Q9UPP1 1060 aa17.78■□□□□ 0.44
LIMCH1-220ENST00000514190 SHPRHQ149N8 1683 aa17.77■□□□□ 0.44
LIMCH1-220ENST00000514190 ESCO1Q5FWF5 840 aa17.77■□□□□ 0.44
LIMCH1-220ENST00000514190 MIER1Q8N108 512 aa17.77■□□□□ 0.44
LIMCH1-220ENST00000514190 PMFBP1Q8TBY8 1022 aa17.77■□□□□ 0.44
LIMCH1-220ENST00000514190 NSD3Q9BZ95 1437 aa17.76■□□□□ 0.43
LIMCH1-220ENST00000514190 NGDNQ8NEJ9 315 aaKnown RBP17.76■□□□□ 0.43
LIMCH1-220ENST00000514190 POLR3AO14802 1390 aaPredicted RBP17.76■□□□□ 0.43
LIMCH1-220ENST00000514190 KTN1Q86UP2 1357 aaKnown RBP17.76■□□□□ 0.43
LIMCH1-220ENST00000514190 NPC1L1Q9UHC9 1359 aa17.76■□□□□ 0.43
LIMCH1-220ENST00000514190 ORAI2Q96SN7 254 aa17.75■□□□□ 0.43
LIMCH1-220ENST00000514190 PRKRIP1Q9H875 184 aaPredicted RBP17.75■□□□□ 0.43
LIMCH1-220ENST00000514190 TOPAZ1Q8N9V7 1692 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms